Wall clock time and date at job start Mon Mar 30 2020 06:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00014 * 2 1 4 4 H 1.48502 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46944 * 299.99648 * 3 2 1 6 6 H 1.48500 * 109.47474 * 59.99992 * 3 2 1 7 7 C 1.37881 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99661 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00341 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47346 * 179.97438 * 9 7 2 11 11 N 1.34843 * 126.19644 * 265.02220 * 10 9 7 12 12 H 0.96996 * 125.89671 * 0.02562 * 11 10 9 13 13 N 1.40010 * 108.20829 * 179.97438 * 11 10 9 14 14 C 1.30683 * 108.52432 * 359.74114 * 13 11 10 15 15 C 1.36429 * 126.19550 * 85.00004 * 10 9 7 16 16 C 1.48483 * 126.22008 * 359.97438 * 15 10 9 17 17 C 1.39305 * 120.12143 * 245.00310 * 16 15 10 18 18 C 1.38016 * 119.89400 * 179.72583 * 17 16 15 19 19 C 1.38335 * 120.14051 * 0.02562 * 18 17 16 20 20 C 1.38277 * 120.25377 * 0.02562 * 19 18 17 21 21 C 1.38167 * 120.09864 * 359.95470 * 20 19 18 22 22 Cl 1.73598 * 120.07144 * 180.02562 * 21 20 19 23 23 H 0.96997 * 119.99587 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47129 * 59.99509 * 9 7 2 25 25 H 1.09008 * 109.47179 * 299.99682 * 9 7 2 26 26 H 1.08001 * 125.94812 * 180.22914 * 14 13 11 27 27 H 1.08003 * 120.04983 * 359.74653 * 17 16 15 28 28 H 1.08002 * 119.92829 * 179.97438 * 18 17 16 29 29 H 1.08004 * 119.87793 * 179.97438 * 19 18 17 30 30 H 1.07992 * 119.95317 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 2.6760 -4.3113 -1.0835 12 1 2.4216 -4.1364 -2.0031 13 7 3.5703 -5.2987 -0.6528 14 6 3.6690 -5.2305 0.6485 15 6 2.8268 -4.1947 1.0973 16 6 2.6295 -3.7732 2.5073 17 6 3.6892 -3.2284 3.2290 18 6 3.4991 -2.8330 4.5376 19 6 2.2591 -2.9771 5.1335 20 6 1.2033 -3.5180 4.4231 21 6 1.3821 -3.9169 3.1124 22 17 0.0560 -4.5954 2.2209 23 1 -0.4849 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5568 0.8904 26 1 4.2863 -5.8607 1.2714 27 1 4.6580 -3.1154 2.7651 28 1 4.3205 -2.4110 5.0977 29 1 2.1151 -2.6666 6.1579 30 1 0.2372 -3.6279 4.8930 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260214754.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:23 Heat of formation + Delta-G solvation = 76.442557 kcal Electronic energy + Delta-G solvation = -16999.136428 eV Core-core repulsion = 14207.132141 eV Total energy + Delta-G solvation = -2792.004287 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57437 -38.50491 -35.83387 -33.50876 -32.05795 -31.22580 -30.30149 -28.82581 -26.78417 -23.39734 -22.34845 -21.99510 -20.97259 -19.07104 -16.86792 -16.41779 -16.14688 -14.97415 -14.86334 -14.53605 -13.73425 -13.58113 -13.43788 -13.25810 -12.92246 -12.39272 -11.93258 -11.59916 -11.21522 -11.08252 -11.00823 -10.86062 -10.59538 -10.37320 -10.09247 -9.84215 -9.57072 -8.85031 -8.57098 -8.50115 -8.24269 -7.51259 -6.13382 -4.17689 1.59964 1.68929 2.66585 2.73294 3.24405 3.31638 3.34481 3.40134 3.55070 4.09257 4.37878 5.16534 5.22235 5.23569 5.31352 5.52486 5.71864 5.82414 5.83615 6.13352 6.23399 6.37488 6.53762 6.61933 6.75423 6.89182 7.16503 7.28515 7.34761 7.47213 7.81236 7.94667 8.18327 8.34054 8.85393 9.46523 10.96414 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.014820 B = 0.009281 C = 0.007716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.863766 B = 3016.036063 C = 3628.053455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.064 3.936 10 C 0.181 3.819 11 N -0.478 5.478 12 H 0.436 0.564 13 N -0.325 5.325 14 C 0.068 3.932 15 C -0.248 4.248 16 C 0.042 3.958 17 C -0.098 4.098 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.113 4.113 21 C -0.021 4.021 22 Cl -0.068 7.068 23 H 0.263 0.737 24 H 0.028 0.972 25 H 0.062 0.938 26 H 0.174 0.826 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -7.026 7.393 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.025 3.975 10 C 0.050 3.950 11 N -0.185 5.185 12 H 0.279 0.721 13 N -0.146 5.146 14 C -0.119 4.119 15 C -0.260 4.260 16 C 0.040 3.960 17 C -0.116 4.116 18 C -0.137 4.137 19 C -0.141 4.141 20 C -0.131 4.131 21 C -0.048 4.048 22 Cl -0.039 7.039 23 H 0.073 0.927 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.191 0.809 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.769 -7.615 6.252 10.549 hybrid contribution -0.099 1.513 0.161 1.525 sum 3.670 -6.102 6.413 9.582 Atomic orbital electron populations 1.69955 1.05958 1.26911 1.49844 1.24938 0.94859 0.99174 0.94889 0.86481 0.80168 0.83417 0.77716 1.19639 1.20935 1.20759 1.20929 0.93016 0.89389 1.51906 0.92383 1.18283 0.91671 0.87552 0.99990 1.22217 0.94376 0.92739 0.85637 1.46166 1.36263 1.27110 1.08915 0.72111 1.77019 1.13117 1.11491 1.12936 1.23667 0.98525 0.97648 0.92038 1.18217 1.10239 1.05561 0.91935 1.17818 0.91075 0.95721 0.91368 1.21146 0.98718 0.97910 0.93872 1.21060 0.97313 1.00137 0.95167 1.20955 0.92821 1.00524 0.99816 1.20889 0.99658 0.99884 0.92710 1.21019 0.89203 1.01972 0.92604 1.98344 1.46403 1.83339 1.75803 0.92732 0.95352 0.92000 0.80906 0.85583 0.86038 0.85898 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -13.83 9.09 -34.44 -0.31 -14.15 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.06 1.57 5.12 -29.04 -0.15 1.42 16 10 C 0.18 3.87 5.92 -81.92 -0.48 3.39 16 11 N -0.48 -9.27 7.33 33.66 0.25 -9.02 16 12 H 0.44 7.36 8.96 -182.67 -1.64 5.73 16 13 N -0.32 -6.15 12.67 30.80 0.39 -5.76 16 14 C 0.07 1.21 12.00 -17.06 -0.20 1.01 16 15 C -0.25 -4.90 4.76 -105.34 -0.50 -5.40 16 16 C 0.04 0.79 5.42 -104.85 -0.57 0.22 16 17 C -0.10 -1.61 9.78 -39.27 -0.38 -1.99 16 18 C -0.12 -1.68 10.03 -39.63 -0.40 -2.08 16 19 C -0.12 -1.71 10.04 -39.53 -0.40 -2.11 16 20 C -0.11 -1.76 9.82 -39.59 -0.39 -2.15 16 21 C -0.02 -0.38 5.86 -39.18 -0.23 -0.61 16 22 Cl -0.07 -1.25 25.75 -51.86 -1.34 -2.58 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 1.60 5.71 -51.92 -0.30 1.30 16 26 H 0.17 2.45 8.06 -52.49 -0.42 2.02 16 27 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 28 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 282.34 15.07 4.25 4.25 Total: -1.00 -29.98 282.34 -8.85 -38.84 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.01 Total: 3.57 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -4.11 Total: -20.81 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 1.37 Total: -39.34 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.34 Total: -2.58 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.98 -8.85 -38.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260214754.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.281 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds