Wall clock time and date at job start Mon Mar 30 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00014 * 2 1 4 4 H 1.48502 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46944 * 299.99648 * 3 2 1 6 6 H 1.48500 * 109.47474 * 59.99992 * 3 2 1 7 7 C 1.37881 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99661 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00341 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47346 * 179.97438 * 9 7 2 11 11 N 1.34843 * 126.19644 * 265.02220 * 10 9 7 12 12 H 0.96996 * 125.89671 * 0.02562 * 11 10 9 13 13 N 1.40010 * 108.20829 * 179.97438 * 11 10 9 14 14 C 1.30683 * 108.52432 * 359.74114 * 13 11 10 15 15 C 1.36429 * 126.19550 * 85.00004 * 10 9 7 16 16 C 1.48483 * 126.22008 * 359.97438 * 15 10 9 17 17 C 1.39305 * 120.12143 * 245.00310 * 16 15 10 18 18 C 1.38016 * 119.89400 * 179.72583 * 17 16 15 19 19 C 1.38335 * 120.14051 * 0.02562 * 18 17 16 20 20 C 1.38277 * 120.25377 * 0.02562 * 19 18 17 21 21 C 1.38167 * 120.09864 * 359.95470 * 20 19 18 22 22 Cl 1.73598 * 120.07144 * 180.02562 * 21 20 19 23 23 H 0.96997 * 119.99587 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47129 * 59.99509 * 9 7 2 25 25 H 1.09008 * 109.47179 * 299.99682 * 9 7 2 26 26 H 1.08001 * 125.94812 * 180.22914 * 14 13 11 27 27 H 1.08003 * 120.04983 * 359.74653 * 17 16 15 28 28 H 1.08002 * 119.92829 * 179.97438 * 18 17 16 29 29 H 1.08004 * 119.87793 * 179.97438 * 19 18 17 30 30 H 1.07992 * 119.95317 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 2.6760 -4.3113 -1.0835 12 1 2.4216 -4.1364 -2.0031 13 7 3.5703 -5.2987 -0.6528 14 6 3.6690 -5.2305 0.6485 15 6 2.8268 -4.1947 1.0973 16 6 2.6295 -3.7732 2.5073 17 6 3.6892 -3.2284 3.2290 18 6 3.4991 -2.8330 4.5376 19 6 2.2591 -2.9771 5.1335 20 6 1.2033 -3.5180 4.4231 21 6 1.3821 -3.9169 3.1124 22 17 0.0560 -4.5954 2.2209 23 1 -0.4849 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5568 0.8904 26 1 4.2863 -5.8607 1.2714 27 1 4.6580 -3.1154 2.7651 28 1 4.3205 -2.4110 5.0977 29 1 2.1151 -2.6666 6.1579 30 1 0.2372 -3.6279 4.8930 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260214754.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:22 Heat of formation + Delta-G solvation = 59.655747 kcal Electronic energy + Delta-G solvation = -16999.864359 eV Core-core repulsion = 14207.132141 eV Total energy + Delta-G solvation = -2792.732218 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.07465 -39.73375 -37.18158 -35.49043 -33.42168 -32.96337 -31.50527 -30.38937 -28.47023 -25.29021 -23.62159 -23.32037 -22.43168 -20.52325 -18.61610 -18.19288 -17.51134 -16.47551 -16.28394 -16.09676 -15.24675 -15.04945 -14.72987 -14.60138 -14.30198 -14.22402 -13.59915 -13.38243 -12.77984 -12.66345 -12.48196 -12.26559 -12.15254 -11.95402 -11.73157 -11.56322 -11.38645 -10.59472 -10.37937 -9.86864 -9.53819 -8.98509 -8.20844 -6.32636 0.35957 0.47270 1.10482 1.38702 1.40977 1.41077 1.52476 1.90631 2.06571 2.41407 2.87221 3.11930 3.86869 4.05145 4.16387 4.24822 4.36217 4.56197 4.60605 4.67456 4.92239 4.96051 5.15165 5.33394 5.42260 5.55663 5.59544 5.66227 5.71866 5.81446 6.06917 6.08499 6.47665 6.76073 6.83743 7.35236 8.88553 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.014820 B = 0.009281 C = 0.007716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.863766 B = 3016.036063 C = 3628.053455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.050 0.950 9 C 0.077 3.923 10 C 0.152 3.848 11 N -0.479 5.479 12 H 0.442 0.558 13 N -0.327 5.327 14 C 0.072 3.928 15 C -0.241 4.241 16 C 0.010 3.990 17 C -0.109 4.109 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.045 4.045 22 Cl -0.085 7.085 23 H 0.266 0.734 24 H 0.005 0.995 25 H 0.047 0.953 26 H 0.211 0.789 27 H 0.135 0.865 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 -6.558 9.186 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.068 0.932 9 C 0.039 3.961 10 C 0.022 3.978 11 N -0.186 5.186 12 H 0.286 0.714 13 N -0.148 5.148 14 C -0.115 4.115 15 C -0.252 4.252 16 C 0.008 3.992 17 C -0.127 4.127 18 C -0.131 4.131 19 C -0.133 4.133 20 C -0.141 4.141 21 C -0.071 4.071 22 Cl -0.056 7.056 23 H 0.075 0.925 24 H 0.023 0.977 25 H 0.065 0.935 26 H 0.227 0.773 27 H 0.153 0.847 28 H 0.175 0.825 29 H 0.179 0.821 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.437 -7.154 8.036 12.055 hybrid contribution -0.594 1.323 -0.316 1.484 sum 4.844 -5.830 7.720 10.820 Atomic orbital electron populations 1.70062 1.07367 1.27850 1.50787 1.25722 0.95615 1.02477 0.94504 0.85506 0.78998 0.79335 0.77921 1.19151 1.20379 1.20147 1.21152 0.92732 0.90723 1.51545 0.93162 1.17909 0.91797 0.88361 0.98054 1.21808 0.95532 0.93314 0.87159 1.46179 1.36355 1.27092 1.08985 0.71379 1.77006 1.12874 1.11195 1.13734 1.24231 0.98198 0.97279 0.91807 1.18487 1.09314 1.05146 0.92293 1.18006 0.92194 0.97820 0.91195 1.21373 0.98483 0.97921 0.94948 1.21496 0.98539 0.98680 0.94348 1.21439 0.91962 0.98590 1.01262 1.21224 1.01210 0.99673 0.91953 1.21271 0.88788 1.03391 0.93679 1.98328 1.47196 1.83687 1.76402 0.92533 0.97662 0.93536 0.77266 0.84740 0.82453 0.82123 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.24 13.29 21.45 0.28 -52.96 16 2 C 0.02 0.89 5.46 84.66 0.46 1.35 16 3 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.52 -28.59 9.09 25.60 0.23 -28.36 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 9 C 0.08 3.95 5.12 29.10 0.15 4.10 16 10 C 0.15 6.63 5.92 41.67 0.25 6.87 16 11 N -0.48 -18.74 7.33 -47.43 -0.35 -19.09 16 12 H 0.44 15.31 8.96 -213.38 -1.91 13.40 16 13 N -0.33 -12.11 12.67 -56.46 -0.72 -12.82 16 14 C 0.07 2.45 12.00 85.50 1.03 3.48 16 15 C -0.24 -9.44 4.76 -20.33 -0.10 -9.53 16 16 C 0.01 0.36 5.42 -20.01 -0.11 0.25 16 17 C -0.11 -3.35 9.78 22.47 0.22 -3.13 16 18 C -0.11 -2.80 10.03 22.24 0.22 -2.58 16 19 C -0.11 -2.79 10.04 22.30 0.22 -2.56 16 20 C -0.12 -3.61 9.82 22.26 0.22 -3.39 16 21 C -0.04 -1.60 5.86 22.53 0.13 -1.47 16 22 Cl -0.08 -3.19 25.75 -2.72 -0.07 -3.26 16 23 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 24 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 25 H 0.05 2.50 5.71 -2.38 -0.01 2.49 16 26 H 0.21 5.37 8.06 -2.91 -0.02 5.35 16 27 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 28 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 29 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 30 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -64.62 282.34 3.37 -61.25 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -0.74 Total: 16.77 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 2.93 Total: -34.98 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -0.78 Total: -84.87 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.07 Total: -3.26 kcal Total: -64.62 3.37 -61.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260214754.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.901 kcal (2) G-P(sol) polarization free energy of solvation -64.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds