Wall clock time and date at job start Mon Mar 30 2020 06:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39929 * 126.03171 * 2 1 4 4 C 1.30785 * 109.58565 * 179.97438 * 3 2 1 5 5 C 1.40164 * 108.96966 * 0.02562 * 4 3 2 6 6 C 1.47719 * 126.47744 * 179.97438 * 5 4 3 7 7 C 1.39760 * 120.16144 * 65.02497 * 6 5 4 8 8 C 1.37872 * 119.84992 * 180.02562 * 7 6 5 9 9 C 1.38460 * 120.18941 * 0.02562 * 8 7 6 10 10 C 1.38357 * 120.33215 * 0.02562 * 9 8 7 11 11 C 1.38055 * 120.14774 * 359.66759 * 10 9 8 12 12 Cl 1.73594 * 120.09935 * 180.30416 * 11 10 9 13 13 C 1.37509 * 126.03609 * 180.27124 * 2 1 3 14 14 C 1.39599 * 126.76698 * 0.02851 * 13 2 1 15 15 H 1.08005 * 120.00258 * 35.82597 * 14 13 2 16 16 C 1.40314 * 120.00235 * 215.82066 * 14 13 2 17 17 N 1.30700 * 119.99848 * 20.54191 * 16 14 13 18 18 Si 1.86797 * 120.00507 * 200.53916 * 16 14 13 19 19 H 1.48507 * 109.46935 * 59.99816 * 18 16 14 20 20 H 1.48498 * 109.47487 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47399 * 300.00566 * 18 16 14 22 22 H 1.09003 * 109.47090 * 95.15365 * 1 2 3 23 23 H 1.09000 * 109.47169 * 215.14974 * 1 2 3 24 24 H 1.09000 * 109.47120 * 335.15241 * 1 2 3 25 25 H 1.07999 * 125.51563 * 179.97438 * 4 3 2 26 26 H 1.08001 * 120.07694 * 359.97438 * 7 6 5 27 27 H 1.07997 * 119.90116 * 180.02562 * 8 7 6 28 28 H 1.07992 * 119.83100 * 179.97438 * 9 8 7 29 29 H 1.08004 * 119.92847 * 179.97438 * 10 9 8 30 30 H 0.96996 * 120.00411 * 176.35806 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2881 1.1316 0.0000 4 6 3.5425 0.7613 0.0006 5 6 3.6042 -0.6389 0.0003 6 6 4.8295 -1.4640 0.0003 7 6 5.6969 -1.4331 1.0957 8 6 6.8390 -2.2054 1.0886 9 6 7.1286 -3.0102 -0.0002 10 6 6.2758 -3.0458 -1.0892 11 6 5.1252 -2.2830 -1.0940 12 17 4.0521 -2.3347 -2.4576 13 6 2.2740 -1.1120 -0.0053 14 6 1.8612 -2.4455 -0.0121 15 1 0.9773 -2.7345 -0.5614 16 6 2.5947 -3.4106 0.6945 17 7 3.3960 -3.0448 1.6601 18 14 2.4262 -5.2184 0.2553 19 1 2.8312 -5.4241 -1.1586 20 1 3.3001 -6.0271 1.1427 21 1 1.0136 -5.6411 0.4318 22 1 -0.3633 -0.0923 -1.0235 23 1 -0.3633 -0.8403 0.5916 24 1 -0.3633 0.9325 0.4318 25 1 4.3931 1.4268 0.0003 26 1 5.4734 -0.8052 1.9455 27 1 7.5096 -2.1825 1.9348 28 1 8.0250 -3.6124 0.0002 29 1 6.5083 -3.6756 -1.9353 30 1 3.8627 -3.7150 2.1833 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260217316.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:04 Heat of formation + Delta-G solvation = 80.505918 kcal Electronic energy + Delta-G solvation = -17590.138782 eV Core-core repulsion = 14798.310695 eV Total energy + Delta-G solvation = -2791.828086 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.18037 -37.82709 -35.26263 -33.65748 -32.09844 -30.37450 -29.82400 -28.50472 -25.25277 -24.94408 -21.79001 -21.45716 -19.46438 -19.07901 -16.99659 -15.91775 -15.39501 -14.71676 -14.38367 -14.04319 -13.74839 -13.16249 -12.91775 -12.74002 -12.34554 -12.19147 -11.73417 -11.50331 -11.29778 -11.17432 -10.75959 -10.60030 -10.51952 -10.40949 -10.10906 -9.68194 -9.40105 -8.88055 -8.00047 -7.80364 -7.66947 -6.81595 -6.53643 -4.51536 2.13353 2.24774 2.97862 3.09833 3.14211 3.29797 3.58475 3.91721 4.13823 4.23020 4.65900 5.10747 5.59838 5.72479 5.78088 5.91322 6.11666 6.20736 6.27064 6.33122 6.40847 6.69539 6.87826 7.09506 7.14734 7.17751 7.29521 7.45070 7.60567 7.77106 7.87570 8.34946 8.36479 8.74269 9.06075 9.46992 10.20200 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.016628 B = 0.012217 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.532963 B = 2291.363897 C = 2894.858146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.431 5.431 3 N -0.383 5.383 4 C 0.073 3.927 5 C -0.321 4.321 6 C 0.113 3.887 7 C -0.082 4.082 8 C -0.128 4.128 9 C -0.147 4.147 10 C -0.127 4.127 11 C -0.035 4.035 12 Cl -0.078 7.078 13 C 0.319 3.681 14 C -0.469 4.469 15 H 0.079 0.921 16 C 0.104 3.896 17 N -0.767 5.767 18 Si 0.891 3.109 19 H -0.256 1.256 20 H -0.277 1.277 21 H -0.267 1.267 22 H 0.043 0.957 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.148 0.852 26 H 0.117 0.883 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.330 -1.856 -1.510 4.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.219 5.219 3 N -0.203 5.203 4 C -0.111 4.111 5 C -0.333 4.333 6 C 0.110 3.890 7 C -0.101 4.101 8 C -0.146 4.146 9 C -0.165 4.165 10 C -0.146 4.146 11 C -0.062 4.062 12 Cl -0.049 7.049 13 C 0.199 3.801 14 C -0.505 4.505 15 H 0.097 0.903 16 C -0.120 4.120 17 N -0.392 5.392 18 Si 0.716 3.284 19 H -0.180 1.180 20 H -0.202 1.202 21 H -0.192 1.192 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.165 0.835 26 H 0.135 0.865 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.479 -0.852 -1.481 3.010 hybrid contribution 0.371 -1.770 -0.173 1.816 sum 2.849 -2.622 -1.654 4.211 Atomic orbital electron populations 1.21199 0.77456 1.02071 1.00580 1.48638 1.04325 1.03959 1.64966 1.76596 1.01295 1.09518 1.32928 1.22973 0.94201 0.94158 0.99722 1.18205 0.90960 0.90980 1.33190 1.17749 0.91217 0.90767 0.89222 1.21095 0.93147 0.98931 0.96886 1.20936 0.97806 0.98011 0.97870 1.20739 0.99792 1.01548 0.94430 1.20747 0.94434 1.00274 0.99146 1.21190 0.92510 1.01673 0.90865 1.98299 1.65672 1.97624 1.43287 1.18355 0.87316 0.86673 0.87750 1.18185 1.12187 0.89437 1.30695 0.90331 1.25524 0.92731 1.00613 0.93093 1.69731 1.20186 1.36602 1.12637 0.86588 0.79081 0.82212 0.80567 1.17999 1.20240 1.19223 0.93817 0.90965 0.91653 0.83466 0.86490 0.87243 0.87108 0.86843 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.52 11.23 59.85 0.67 3.19 16 2 N -0.43 -10.52 4.08 -65.15 -0.27 -10.79 16 3 N -0.38 -9.49 12.48 30.68 0.38 -9.11 16 4 C 0.07 1.74 11.92 -17.27 -0.21 1.53 16 5 C -0.32 -7.87 4.49 -104.18 -0.47 -8.34 16 6 C 0.11 2.55 3.42 -104.85 -0.36 2.19 16 7 C -0.08 -1.69 8.62 -39.15 -0.34 -2.02 16 8 C -0.13 -2.28 10.03 -39.63 -0.40 -2.68 16 9 C -0.15 -2.54 10.04 -39.46 -0.40 -2.93 16 10 C -0.13 -2.41 9.82 -39.60 -0.39 -2.80 16 11 C -0.04 -0.77 6.04 -39.05 -0.24 -1.00 16 12 Cl -0.08 -1.68 26.88 -51.86 -1.39 -3.07 16 13 C 0.32 8.10 5.89 -83.69 -0.49 7.61 16 14 C -0.47 -11.70 7.97 -38.29 -0.31 -12.01 16 15 H 0.08 1.92 7.93 -52.48 -0.42 1.50 16 16 C 0.10 2.49 4.46 -17.25 -0.08 2.41 16 17 N -0.77 -18.74 10.13 55.57 0.56 -18.18 16 18 Si 0.89 18.80 29.61 -169.99 -5.03 13.77 16 19 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.07 1.34 7.98 -51.93 -0.41 0.92 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.15 3.04 8.06 -52.49 -0.42 2.61 16 26 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 27 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 28 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.11 1.91 8.06 -52.48 -0.42 1.49 16 30 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 LS Contribution 279.21 15.07 4.21 4.21 Total: -1.00 -27.94 279.21 -7.46 -35.39 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -2.92 Total: 2.62 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -2.99 Total: -14.84 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.68 Total: -38.07 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -1.39 Total: -3.07 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.94 -7.46 -35.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217316.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.897 kcal (2) G-P(sol) polarization free energy of solvation -27.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds