Wall clock time and date at job start Mon Mar 30 2020 06:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39929 * 126.03171 * 2 1 4 4 C 1.30785 * 109.58565 * 179.97438 * 3 2 1 5 5 C 1.40164 * 108.96966 * 0.02562 * 4 3 2 6 6 C 1.47719 * 126.47744 * 179.97438 * 5 4 3 7 7 C 1.39760 * 120.16144 * 65.02497 * 6 5 4 8 8 C 1.37872 * 119.84992 * 180.02562 * 7 6 5 9 9 C 1.38460 * 120.18941 * 0.02562 * 8 7 6 10 10 C 1.38357 * 120.33215 * 0.02562 * 9 8 7 11 11 C 1.38055 * 120.14774 * 359.66759 * 10 9 8 12 12 Cl 1.73594 * 120.09935 * 180.30416 * 11 10 9 13 13 C 1.37509 * 126.03609 * 180.27124 * 2 1 3 14 14 C 1.39599 * 126.76698 * 0.02851 * 13 2 1 15 15 H 1.08005 * 120.00258 * 35.82597 * 14 13 2 16 16 C 1.40314 * 120.00235 * 215.82066 * 14 13 2 17 17 N 1.30700 * 119.99848 * 20.54191 * 16 14 13 18 18 Si 1.86797 * 120.00507 * 200.53916 * 16 14 13 19 19 H 1.48507 * 109.46935 * 59.99816 * 18 16 14 20 20 H 1.48498 * 109.47487 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47399 * 300.00566 * 18 16 14 22 22 H 1.09003 * 109.47090 * 95.15365 * 1 2 3 23 23 H 1.09000 * 109.47169 * 215.14974 * 1 2 3 24 24 H 1.09000 * 109.47120 * 335.15241 * 1 2 3 25 25 H 1.07999 * 125.51563 * 179.97438 * 4 3 2 26 26 H 1.08001 * 120.07694 * 359.97438 * 7 6 5 27 27 H 1.07997 * 119.90116 * 180.02562 * 8 7 6 28 28 H 1.07992 * 119.83100 * 179.97438 * 9 8 7 29 29 H 1.08004 * 119.92847 * 179.97438 * 10 9 8 30 30 H 0.96996 * 120.00411 * 176.35806 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2881 1.1316 0.0000 4 6 3.5425 0.7613 0.0006 5 6 3.6042 -0.6389 0.0003 6 6 4.8295 -1.4640 0.0003 7 6 5.6969 -1.4331 1.0957 8 6 6.8390 -2.2054 1.0886 9 6 7.1286 -3.0102 -0.0002 10 6 6.2758 -3.0458 -1.0892 11 6 5.1252 -2.2830 -1.0940 12 17 4.0521 -2.3347 -2.4576 13 6 2.2740 -1.1120 -0.0053 14 6 1.8612 -2.4455 -0.0121 15 1 0.9773 -2.7345 -0.5614 16 6 2.5947 -3.4106 0.6945 17 7 3.3960 -3.0448 1.6601 18 14 2.4262 -5.2184 0.2553 19 1 2.8312 -5.4241 -1.1586 20 1 3.3001 -6.0271 1.1427 21 1 1.0136 -5.6411 0.4318 22 1 -0.3633 -0.0923 -1.0235 23 1 -0.3633 -0.8403 0.5916 24 1 -0.3633 0.9325 0.4318 25 1 4.3931 1.4268 0.0003 26 1 5.4734 -0.8052 1.9455 27 1 7.5096 -2.1825 1.9348 28 1 8.0250 -3.6124 0.0002 29 1 6.5083 -3.6756 -1.9353 30 1 3.8627 -3.7150 2.1833 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260217316.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:04 Heat of formation + Delta-G solvation = 66.368146 kcal Electronic energy + Delta-G solvation = -17590.751842 eV Core-core repulsion = 14798.310695 eV Total energy + Delta-G solvation = -2792.441146 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.94303 -39.36988 -36.86634 -35.46479 -33.78544 -32.04137 -31.32472 -30.21748 -26.91247 -26.74822 -23.36618 -22.98305 -21.24592 -20.82157 -18.72084 -17.52441 -17.13610 -16.32806 -15.95708 -15.66724 -15.39300 -14.84014 -14.46707 -14.33245 -13.97113 -13.84543 -13.44946 -13.05800 -12.98673 -12.83228 -12.39108 -12.17186 -12.09368 -11.99352 -11.83732 -11.30752 -11.16657 -10.70201 -9.66263 -9.48721 -9.27314 -8.61196 -8.29256 -6.37063 0.61973 0.74855 1.29447 1.41971 1.47086 1.71237 1.77968 2.20582 2.42858 2.45812 3.09817 3.30705 4.16128 4.23799 4.35230 4.51027 4.59979 4.62547 4.76206 4.78587 4.87997 5.18324 5.25007 5.37581 5.42601 5.61334 5.71276 5.82542 5.94077 6.07617 6.30484 6.49981 6.59512 6.90398 7.25405 7.62658 8.42027 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.016628 B = 0.012217 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.532963 B = 2291.363897 C = 2894.858146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.444 5.444 3 N -0.402 5.402 4 C 0.058 3.942 5 C -0.326 4.326 6 C 0.086 3.914 7 C -0.094 4.094 8 C -0.121 4.121 9 C -0.135 4.135 10 C -0.132 4.132 11 C -0.055 4.055 12 Cl -0.090 7.090 13 C 0.294 3.706 14 C -0.485 4.485 15 H 0.073 0.927 16 C 0.081 3.919 17 N -0.783 5.783 18 Si 0.936 3.064 19 H -0.261 1.261 20 H -0.269 1.269 21 H -0.260 1.260 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.170 0.830 26 H 0.107 0.893 27 H 0.143 0.857 28 H 0.152 0.848 29 H 0.134 0.866 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -3.214 -1.261 5.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.232 5.232 3 N -0.223 5.223 4 C -0.124 4.124 5 C -0.339 4.339 6 C 0.084 3.916 7 C -0.113 4.113 8 C -0.139 4.139 9 C -0.153 4.153 10 C -0.151 4.151 11 C -0.081 4.081 12 Cl -0.061 7.061 13 C 0.173 3.827 14 C -0.521 4.521 15 H 0.091 0.909 16 C -0.141 4.141 17 N -0.408 5.408 18 Si 0.758 3.242 19 H -0.186 1.186 20 H -0.193 1.193 21 H -0.185 1.185 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.187 0.813 26 H 0.125 0.875 27 H 0.161 0.839 28 H 0.170 0.830 29 H 0.152 0.848 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.884 -2.197 -1.227 4.628 hybrid contribution -0.015 -1.315 -0.229 1.335 sum 3.868 -3.512 -1.456 5.424 Atomic orbital electron populations 1.21441 0.75385 1.03210 1.01758 1.49032 1.05814 1.03663 1.64721 1.76513 1.01891 1.10183 1.33745 1.23395 0.94652 0.94743 0.99639 1.18582 0.91689 0.91448 1.32156 1.17815 0.91339 0.91906 0.90586 1.21110 0.94193 0.99837 0.96170 1.21290 0.96962 0.96551 0.99078 1.21205 1.00337 1.00685 0.93047 1.21088 0.93644 0.99851 1.00507 1.21361 0.93501 1.02695 0.90573 1.98284 1.66351 1.97716 1.43792 1.18689 0.88175 0.87189 0.88621 1.18260 1.12615 0.89804 1.31378 0.90885 1.25987 0.92331 1.03114 0.92696 1.69782 1.20464 1.37537 1.12976 0.85909 0.79535 0.78779 0.79987 1.18557 1.19314 1.18453 0.92423 0.90489 0.89955 0.81327 0.87481 0.83926 0.83048 0.84817 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.79 11.23 127.77 1.44 6.22 16 2 N -0.44 -21.87 4.08 -360.04 -1.47 -23.34 16 3 N -0.40 -20.12 12.48 -56.86 -0.71 -20.83 16 4 C 0.06 2.81 11.92 85.32 1.02 3.82 16 5 C -0.33 -16.14 4.49 -19.58 -0.09 -16.23 16 6 C 0.09 3.84 3.42 -20.01 -0.07 3.77 16 7 C -0.09 -3.77 8.62 22.55 0.19 -3.58 16 8 C -0.12 -3.92 10.03 22.24 0.22 -3.69 16 9 C -0.13 -4.11 10.04 22.35 0.22 -3.89 16 10 C -0.13 -4.66 9.82 22.25 0.22 -4.44 16 11 C -0.05 -2.30 6.04 22.62 0.14 -2.16 16 12 Cl -0.09 -3.87 26.88 -2.72 -0.07 -3.95 16 13 C 0.29 15.07 5.89 39.30 0.23 15.30 16 14 C -0.48 -24.30 7.97 23.10 0.18 -24.12 16 15 H 0.07 3.62 7.93 -2.91 -0.02 3.59 16 16 C 0.08 3.83 4.46 85.37 0.38 4.21 16 17 N -0.78 -37.79 10.13 21.90 0.22 -37.57 16 18 Si 0.94 37.56 29.61 68.60 2.03 39.59 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 21 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 22 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.08 2.85 7.98 -2.39 -0.02 2.83 16 24 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 25 H 0.17 7.01 8.06 -2.91 -0.02 6.99 16 26 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 27 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 28 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 29 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 30 H 0.29 12.90 8.30 -92.71 -0.77 12.13 16 Total: -1.00 -59.22 279.21 5.24 -53.97 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 1.15 Total: 16.92 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 4.09 Total: -24.79 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -1.96 Total: -81.74 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 17 Polarization: -3.87 SS G_CDS: -0.07 Total: -3.95 kcal Total: -59.22 5.24 -53.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217316.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.341 kcal (2) G-P(sol) polarization free energy of solvation -59.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds