Wall clock time and date at job start Mon Mar 30 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86803 * 119.99884 * 2 1 4 4 H 1.48502 * 109.46551 * 239.99740 * 3 2 1 5 5 H 1.48496 * 109.46909 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47230 * 119.99672 * 3 2 1 7 7 C 1.37875 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99681 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00284 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47236 * 59.99704 * 9 7 2 11 11 C 1.50698 * 109.47130 * 179.97438 * 9 7 2 12 12 C 1.38271 * 119.94467 * 30.30521 * 11 9 7 13 13 C 1.38138 * 120.05803 * 180.30180 * 12 11 9 14 14 C 1.38736 * 119.94337 * 359.41293 * 13 12 11 15 15 O 1.35893 * 120.05957 * 180.30421 * 14 13 12 16 16 C 1.38740 * 119.88595 * 0.28279 * 14 13 12 17 17 C 1.38146 * 119.94197 * 359.97438 * 16 14 13 18 18 C 1.52998 * 109.47020 * 299.99861 * 9 7 2 19 19 F 1.39900 * 109.47222 * 300.00067 * 18 9 7 20 20 F 1.39899 * 109.47365 * 59.99731 * 18 9 7 21 21 F 1.39898 * 109.47176 * 180.02562 * 18 9 7 22 22 H 0.96999 * 119.99373 * 0.02562 * 1 2 3 23 23 H 0.96699 * 114.00163 * 59.99536 * 10 9 7 24 24 H 1.08004 * 119.97370 * 0.02562 * 12 11 9 25 25 H 1.08002 * 120.03311 * 179.69762 * 13 12 11 26 26 H 0.96702 * 114.00269 * 89.99703 * 15 14 13 27 27 H 1.07993 * 120.02463 * 180.02562 * 16 14 13 28 28 H 1.08006 * 119.96944 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4299 -2.5751 -1.1665 11 6 2.2303 -3.6446 0.0005 12 6 3.4650 -3.4970 0.6051 13 6 4.3669 -4.5434 0.6011 14 6 4.0282 -5.7472 0.0003 15 8 4.9112 -6.7801 0.0004 16 6 2.7862 -5.8948 -0.6001 17 6 1.8900 -4.8436 -0.5980 18 6 0.3710 -2.5799 1.2495 19 9 1.1749 -2.5055 2.3920 20 9 -0.5381 -1.5165 1.2490 21 9 -0.3281 -3.7917 1.2498 22 1 -0.4849 0.8401 -0.0004 23 1 0.9223 -2.5299 -1.9975 24 1 3.7264 -2.5614 1.0771 25 1 5.3331 -4.4260 1.0692 26 1 4.8309 -7.3663 0.7653 27 1 2.5201 -6.8310 -1.0680 28 1 0.9232 -4.9579 -1.0656 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260237493.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:35 Heat of formation + Delta-G solvation = -194.458847 kcal Electronic energy + Delta-G solvation = -20791.466504 eV Core-core repulsion = 16972.856395 eV Total energy + Delta-G solvation = -3818.610109 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.49032 -46.17203 -45.68576 -39.38898 -37.16638 -35.22924 -32.55027 -30.65599 -30.15582 -27.12189 -24.79076 -22.45345 -22.19731 -20.36573 -18.12748 -17.73629 -17.01861 -16.71794 -16.00260 -15.67083 -15.07327 -14.90367 -14.76805 -13.90367 -13.45102 -13.11470 -12.90809 -12.78322 -12.55366 -12.35467 -12.16079 -12.07327 -11.91523 -11.66337 -11.38692 -11.08019 -10.96690 -10.75863 -10.30325 -10.08398 -9.44240 -8.92099 -8.59233 -8.48817 -7.99977 -6.15777 -4.50374 1.63843 1.83892 3.19637 3.25267 3.26610 3.99089 4.20289 4.31453 4.53301 4.95408 5.14012 5.33764 5.37266 5.43331 5.80727 5.96500 6.03337 6.13509 6.32277 6.44151 6.65760 6.80777 6.83615 7.17195 7.25436 7.58724 7.66643 7.89464 8.45688 8.85956 9.24231 10.71058 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.008751 C = 0.007509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.911993 B = 3198.976904 C = 3727.786916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.076 3.924 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.580 4.580 8 H 0.078 0.922 9 C 0.262 3.738 10 O -0.546 6.546 11 C -0.105 4.105 12 C -0.070 4.070 13 C -0.157 4.157 14 C 0.089 3.911 15 O -0.504 6.504 16 C -0.156 4.156 17 C -0.087 4.087 18 C 0.456 3.544 19 F -0.198 7.198 20 F -0.130 7.130 21 F -0.219 7.219 22 H 0.265 0.735 23 H 0.370 0.630 24 H 0.139 0.861 25 H 0.122 0.878 26 H 0.383 0.617 27 H 0.121 0.879 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.275 -7.186 1.003 8.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.135 4.135 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.616 4.616 8 H 0.096 0.904 9 C 0.220 3.780 10 O -0.350 6.350 11 C -0.106 4.106 12 C -0.088 4.088 13 C -0.175 4.175 14 C 0.045 3.955 15 O -0.313 6.313 16 C -0.174 4.174 17 C -0.105 4.105 18 C 0.401 3.599 19 F -0.179 7.179 20 F -0.111 7.111 21 F -0.201 7.201 22 H 0.075 0.925 23 H 0.217 0.783 24 H 0.157 0.843 25 H 0.140 0.860 26 H 0.238 0.762 27 H 0.139 0.861 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.757 -6.853 0.949 7.873 hybrid contribution 0.628 0.623 0.289 0.931 sum 4.385 -6.230 1.238 7.718 Atomic orbital electron populations 1.70477 1.05742 1.26812 1.41619 1.25154 0.94990 0.99898 0.93479 0.86459 0.79577 0.81919 0.79000 1.19785 1.20928 1.19812 1.21326 0.93723 0.88682 1.57903 0.90446 1.18213 0.84375 0.92147 0.83224 1.86389 1.37491 1.96263 1.14905 1.20837 0.96298 0.95455 0.97984 1.21209 0.92284 0.98439 0.96842 1.21386 1.00353 0.93807 1.01986 1.18469 0.89057 0.88190 0.99780 1.84803 1.57481 1.40044 1.49019 1.21282 0.93283 0.99872 1.02977 1.21015 0.99226 0.91900 0.98370 1.21410 0.79890 0.72953 0.85601 1.93020 1.74598 1.96221 1.54096 1.93431 1.68128 1.53385 1.96141 1.93036 1.81507 1.48627 1.96970 0.92457 0.78348 0.84282 0.85999 0.76245 0.86088 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.08 9.06 55.43 0.50 -21.58 15 2 C 0.08 1.95 5.14 -17.82 -0.09 1.86 15 3 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 15 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 15 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 7 C -0.58 -14.54 7.31 -34.44 -0.25 -14.79 15 8 H 0.08 1.87 6.05 -52.48 -0.32 1.56 15 9 C 0.26 6.22 0.47 -92.93 -0.04 6.18 15 10 O -0.55 -12.90 11.24 -35.23 -0.40 -13.29 15 11 C -0.11 -2.18 4.41 -104.60 -0.46 -2.64 15 12 C -0.07 -1.34 8.58 -39.61 -0.34 -1.68 15 13 C -0.16 -2.62 9.99 -39.43 -0.39 -3.01 15 14 C 0.09 1.43 6.71 -39.21 -0.26 1.16 15 15 O -0.50 -6.86 13.50 -19.40 -0.26 -7.12 15 16 C -0.16 -2.54 9.99 -39.43 -0.39 -2.93 15 17 C -0.09 -1.61 9.06 -39.61 -0.36 -1.97 15 18 C 0.46 11.46 2.36 37.16 0.09 11.54 15 19 F -0.20 -4.81 16.48 2.25 0.04 -4.77 15 20 F -0.13 -3.57 12.85 2.25 0.03 -3.54 15 21 F -0.22 -5.26 16.73 2.25 0.04 -5.22 15 22 H 0.26 6.88 8.31 -40.82 -0.34 6.54 15 23 H 0.37 7.56 9.03 45.56 0.41 7.97 15 24 H 0.14 2.73 6.44 -52.48 -0.34 2.39 15 25 H 0.12 1.75 8.06 -52.49 -0.42 1.33 15 26 H 0.38 3.27 9.06 45.56 0.41 3.68 15 27 H 0.12 1.68 8.06 -52.49 -0.42 1.26 15 28 H 0.13 2.35 7.48 -52.48 -0.39 1.96 15 LS Contribution 257.21 15.07 3.88 3.88 Total: -1.00 -29.38 257.21 -3.91 -33.29 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -0.20 Total: 9.74 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -2.51 Total: -6.28 kcal Atomic # 7 Polarization: -22.08 SS G_CDS: 0.50 Total: -21.58 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.66 Total: -20.42 kcal Atomic # 9 Polarization: -13.63 SS G_CDS: 0.10 Total: -13.53 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.38 -3.91 -33.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260237493.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.168 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds