Wall clock time and date at job start Mon Mar 30 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86803 * 119.99884 * 2 1 4 4 H 1.48502 * 109.46551 * 239.99740 * 3 2 1 5 5 H 1.48496 * 109.46909 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47230 * 119.99672 * 3 2 1 7 7 C 1.37875 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99681 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00284 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47236 * 59.99704 * 9 7 2 11 11 C 1.50698 * 109.47130 * 179.97438 * 9 7 2 12 12 C 1.38271 * 119.94467 * 30.30521 * 11 9 7 13 13 C 1.38138 * 120.05803 * 180.30180 * 12 11 9 14 14 C 1.38736 * 119.94337 * 359.41293 * 13 12 11 15 15 O 1.35893 * 120.05957 * 180.30421 * 14 13 12 16 16 C 1.38740 * 119.88595 * 0.28279 * 14 13 12 17 17 C 1.38146 * 119.94197 * 359.97438 * 16 14 13 18 18 C 1.52998 * 109.47020 * 299.99861 * 9 7 2 19 19 F 1.39900 * 109.47222 * 300.00067 * 18 9 7 20 20 F 1.39899 * 109.47365 * 59.99731 * 18 9 7 21 21 F 1.39898 * 109.47176 * 180.02562 * 18 9 7 22 22 H 0.96999 * 119.99373 * 0.02562 * 1 2 3 23 23 H 0.96699 * 114.00163 * 59.99536 * 10 9 7 24 24 H 1.08004 * 119.97370 * 0.02562 * 12 11 9 25 25 H 1.08002 * 120.03311 * 179.69762 * 13 12 11 26 26 H 0.96702 * 114.00269 * 89.99703 * 15 14 13 27 27 H 1.07993 * 120.02463 * 180.02562 * 16 14 13 28 28 H 1.08006 * 119.96944 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4299 -2.5751 -1.1665 11 6 2.2303 -3.6446 0.0005 12 6 3.4650 -3.4970 0.6051 13 6 4.3669 -4.5434 0.6011 14 6 4.0282 -5.7472 0.0003 15 8 4.9112 -6.7801 0.0004 16 6 2.7862 -5.8948 -0.6001 17 6 1.8900 -4.8436 -0.5980 18 6 0.3710 -2.5799 1.2495 19 9 1.1749 -2.5055 2.3920 20 9 -0.5381 -1.5165 1.2490 21 9 -0.3281 -3.7917 1.2498 22 1 -0.4849 0.8401 -0.0004 23 1 0.9223 -2.5299 -1.9975 24 1 3.7264 -2.5614 1.0771 25 1 5.3331 -4.4260 1.0692 26 1 4.8309 -7.3663 0.7653 27 1 2.5201 -6.8310 -1.0680 28 1 0.9232 -4.9579 -1.0656 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260237493.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:34 Heat of formation + Delta-G solvation = -215.764496 kcal Electronic energy + Delta-G solvation = -20792.390386 eV Core-core repulsion = 16972.856395 eV Total energy + Delta-G solvation = -3819.533992 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.45897 -48.11759 -47.72371 -40.73730 -38.61187 -36.73960 -34.46733 -32.13564 -31.64141 -28.76069 -26.71410 -24.05902 -23.58149 -21.99933 -19.68071 -19.26457 -18.89879 -18.66169 -17.81368 -17.34521 -16.72237 -16.33675 -16.24194 -15.44017 -15.07562 -14.99200 -14.64955 -14.51932 -14.32273 -14.28517 -13.96368 -13.86693 -13.76270 -13.11358 -12.86186 -12.73276 -12.69158 -12.54828 -12.09272 -11.41786 -11.18349 -10.78258 -10.42399 -9.85175 -9.41338 -8.09143 -6.47970 0.28346 0.48411 1.45083 1.46188 1.53818 2.31008 2.37587 2.74190 3.02783 3.28292 3.35908 3.70799 3.88450 4.06450 4.13891 4.38886 4.56367 4.63100 4.85674 4.98631 5.16268 5.41881 5.48598 5.59683 5.66634 5.88082 5.97717 6.54445 6.91317 7.11894 7.30844 8.77597 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.008751 C = 0.007509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.911993 B = 3198.976904 C = 3727.786916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.031 3.969 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.587 4.587 8 H 0.082 0.918 9 C 0.261 3.739 10 O -0.559 6.559 11 C -0.132 4.132 12 C -0.083 4.083 13 C -0.155 4.155 14 C 0.104 3.896 15 O -0.504 6.504 16 C -0.151 4.151 17 C -0.092 4.092 18 C 0.447 3.553 19 F -0.197 7.197 20 F -0.148 7.148 21 F -0.215 7.215 22 H 0.262 0.738 23 H 0.380 0.620 24 H 0.127 0.873 25 H 0.147 0.853 26 H 0.410 0.590 27 H 0.149 0.851 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.037 -8.421 0.821 10.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.177 4.177 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.623 4.623 8 H 0.099 0.901 9 C 0.220 3.780 10 O -0.366 6.366 11 C -0.132 4.132 12 C -0.101 4.101 13 C -0.173 4.173 14 C 0.060 3.940 15 O -0.317 6.317 16 C -0.170 4.170 17 C -0.110 4.110 18 C 0.392 3.608 19 F -0.178 7.178 20 F -0.129 7.129 21 F -0.197 7.197 22 H 0.072 0.928 23 H 0.228 0.772 24 H 0.145 0.855 25 H 0.164 0.836 26 H 0.269 0.731 27 H 0.167 0.833 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.536 -8.116 0.776 9.855 hybrid contribution 0.140 0.850 0.368 0.937 sum 5.676 -7.266 1.144 9.291 Atomic orbital electron populations 1.70611 1.07073 1.27164 1.43210 1.25899 0.95628 1.02955 0.93205 0.85537 0.78348 0.78197 0.79175 1.18947 1.21093 1.19505 1.21639 0.94088 0.89519 1.57075 0.90051 1.18163 0.84383 0.93196 0.82305 1.86329 1.38263 1.96384 1.15574 1.20624 0.96440 0.95452 1.00702 1.21149 0.92532 0.99004 0.97381 1.21584 1.00762 0.93272 1.01693 1.18488 0.88865 0.88567 0.98078 1.84743 1.56573 1.39717 1.50690 1.21531 0.92915 1.00133 1.02396 1.21023 0.99775 0.91837 0.98356 1.21764 0.79946 0.72608 0.86475 1.93006 1.74459 1.96213 1.54157 1.93391 1.68863 1.54375 1.96282 1.93026 1.81494 1.48221 1.96999 0.92842 0.77167 0.85484 0.83570 0.73131 0.83322 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.73 9.06 21.45 0.19 -46.54 15 2 C 0.03 1.58 5.14 84.65 0.44 2.02 15 3 Si 0.96 40.93 29.54 68.60 2.03 42.96 15 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 5 H -0.29 -12.09 7.11 99.48 0.71 -11.38 15 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 7 C -0.59 -29.55 7.31 25.60 0.19 -29.36 15 8 H 0.08 3.93 6.05 -2.91 -0.02 3.92 15 9 C 0.26 12.47 0.47 -12.29 -0.01 12.47 15 10 O -0.56 -26.77 11.24 -148.98 -1.67 -28.44 15 11 C -0.13 -5.38 4.41 -19.85 -0.09 -5.47 15 12 C -0.08 -3.09 8.58 22.25 0.19 -2.90 15 13 C -0.15 -4.75 9.99 22.37 0.22 -4.52 15 14 C 0.10 2.97 6.71 22.51 0.15 3.13 15 15 O -0.50 -11.43 13.50 -92.34 -1.25 -12.68 15 16 C -0.15 -4.47 9.99 22.37 0.22 -4.25 15 17 C -0.09 -3.27 9.06 22.25 0.20 -3.06 15 18 C 0.45 22.72 2.36 71.98 0.17 22.89 15 19 F -0.20 -9.66 16.48 44.97 0.74 -8.92 15 20 F -0.15 -8.33 12.85 44.97 0.58 -7.75 15 21 F -0.22 -10.39 16.73 44.97 0.75 -9.64 15 22 H 0.26 13.89 8.31 -92.71 -0.77 13.12 15 23 H 0.38 15.77 9.03 -74.06 -0.67 15.10 15 24 H 0.13 4.97 6.44 -2.91 -0.02 4.95 15 25 H 0.15 3.70 8.06 -2.91 -0.02 3.67 15 26 H 0.41 4.99 9.06 -74.06 -0.67 4.32 15 27 H 0.15 3.53 8.06 -2.91 -0.02 3.50 15 28 H 0.13 4.52 7.48 -2.91 -0.02 4.50 15 Total: -1.00 -61.99 257.21 2.96 -59.03 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -0.09 Total: 21.04 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 1.69 Total: -9.06 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.19 Total: -46.54 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -2.92 Total: -41.12 kcal Atomic # 9 Polarization: -28.38 SS G_CDS: 2.07 Total: -26.31 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -61.99 2.96 -59.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260237493.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.735 kcal (2) G-P(sol) polarization free energy of solvation -61.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds