Wall clock time and date at job start Mon Mar 30 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48503 * 109.46848 * 239.99656 * 3 2 1 5 5 H 1.48500 * 109.47035 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00161 * 3 2 1 7 7 C 1.37880 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99597 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00316 * 0.02562 * 7 2 1 10 10 O 1.42906 * 109.46694 * 299.99266 * 9 7 2 11 11 C 1.50697 * 109.47179 * 179.97438 * 9 7 2 12 12 C 1.38269 * 119.94270 * 329.72101 * 11 9 7 13 13 C 1.38147 * 120.05438 * 179.73060 * 12 11 9 14 14 C 1.38733 * 119.94266 * 0.51998 * 13 12 11 15 15 O 1.35902 * 120.05503 * 179.72856 * 14 13 12 16 16 C 1.38728 * 119.89086 * 359.75510 * 14 13 12 17 17 C 1.38147 * 119.94335 * 359.97438 * 16 14 13 18 18 C 1.52997 * 109.47242 * 59.99321 * 9 7 2 19 19 F 1.39905 * 109.47157 * 180.02562 * 18 9 7 20 20 F 1.39900 * 109.47010 * 60.00500 * 18 9 7 21 21 F 1.39897 * 109.47422 * 300.00192 * 18 9 7 22 22 H 0.97003 * 119.99476 * 0.02562 * 1 2 3 23 23 H 0.96690 * 114.00346 * 300.00033 * 10 9 7 24 24 H 1.07998 * 119.97369 * 359.97438 * 12 11 9 25 25 H 1.07993 * 120.02990 * 180.30091 * 13 12 11 26 26 H 0.96701 * 114.00209 * 270.02923 * 15 14 13 27 27 H 1.07994 * 120.03259 * 179.97438 * 16 14 13 28 28 H 1.08001 * 119.97638 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4291 -2.5746 1.1672 11 6 2.2302 -3.6446 0.0005 12 6 3.4651 -3.4969 -0.6036 13 6 4.3667 -4.5435 -0.6001 14 6 4.0280 -5.7472 0.0008 15 8 4.9111 -6.7802 0.0008 16 6 2.7862 -5.8949 0.6013 17 6 1.8902 -4.8433 0.6000 18 6 0.3717 -2.5804 -1.2489 19 9 -0.3283 -3.7918 -1.2486 20 9 1.1763 -2.5067 -2.3910 21 9 -0.5374 -1.5171 -1.2494 22 1 -0.4849 0.8401 -0.0004 23 1 0.9209 -2.5291 1.9984 24 1 3.7266 -2.5611 -1.0751 25 1 5.3330 -4.4261 -1.0678 26 1 4.8310 -7.3662 -0.7643 27 1 2.5200 -6.8310 1.0693 28 1 0.9235 -4.9575 1.0677 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260237495.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:36 Heat of formation + Delta-G solvation = -215.782801 kcal Electronic energy + Delta-G solvation = -20792.510190 eV Core-core repulsion = 16972.975404 eV Total energy + Delta-G solvation = -3819.534785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.45847 -48.11882 -47.72282 -40.73705 -38.61091 -36.73920 -34.46814 -32.13682 -31.64179 -28.76066 -26.71413 -24.05860 -23.58199 -21.99900 -19.68082 -19.26457 -18.89830 -18.66250 -17.81311 -17.34534 -16.72244 -16.33640 -16.24180 -15.44033 -15.07546 -14.99243 -14.64926 -14.52005 -14.32271 -14.28457 -13.96411 -13.86656 -13.76308 -13.11392 -12.86146 -12.73290 -12.69125 -12.54863 -12.09271 -11.41798 -11.18379 -10.78348 -10.42399 -9.85164 -9.41393 -8.09193 -6.47957 0.28363 0.48379 1.45044 1.46212 1.53812 2.30950 2.37572 2.74174 3.02783 3.28316 3.35872 3.70834 3.88442 4.06470 4.13889 4.38786 4.56359 4.63107 4.85686 4.98628 5.16273 5.41863 5.48598 5.59695 5.66628 5.88096 5.97710 6.54447 6.91291 7.11943 7.30843 8.77604 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.008751 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.847708 B = 3198.917433 C = 3727.538308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.031 3.969 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.587 4.587 8 H 0.082 0.918 9 C 0.261 3.739 10 O -0.559 6.559 11 C -0.132 4.132 12 C -0.082 4.082 13 C -0.155 4.155 14 C 0.104 3.896 15 O -0.504 6.504 16 C -0.151 4.151 17 C -0.092 4.092 18 C 0.447 3.553 19 F -0.215 7.215 20 F -0.196 7.196 21 F -0.148 7.148 22 H 0.262 0.738 23 H 0.380 0.620 24 H 0.127 0.873 25 H 0.147 0.853 26 H 0.410 0.590 27 H 0.149 0.851 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.037 -8.420 -0.817 10.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.177 4.177 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.623 4.623 8 H 0.099 0.901 9 C 0.220 3.780 10 O -0.365 6.365 11 C -0.132 4.132 12 C -0.101 4.101 13 C -0.173 4.173 14 C 0.060 3.940 15 O -0.317 6.317 16 C -0.170 4.170 17 C -0.110 4.110 18 C 0.392 3.608 19 F -0.197 7.197 20 F -0.178 7.178 21 F -0.129 7.129 22 H 0.072 0.928 23 H 0.228 0.772 24 H 0.145 0.855 25 H 0.164 0.836 26 H 0.269 0.731 27 H 0.167 0.833 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.536 -8.115 -0.772 9.854 hybrid contribution 0.140 0.850 -0.369 0.938 sum 5.677 -7.265 -1.141 9.290 Atomic orbital electron populations 1.70607 1.07077 1.27168 1.43197 1.25898 0.95627 1.02955 0.93204 0.85538 0.78349 0.78198 0.79176 1.19514 1.21092 1.18938 1.21638 0.94087 0.89517 1.57089 0.90051 1.18162 0.84380 0.93195 0.82304 1.86329 1.38253 1.96387 1.15577 1.20625 0.96440 0.95460 1.00698 1.21150 0.92527 0.99000 0.97386 1.21584 1.00766 0.93269 1.01692 1.18486 0.88864 0.88569 0.98079 1.84746 1.56578 1.39727 1.50674 1.21528 0.92920 1.00127 1.02398 1.21024 0.99778 0.91840 0.98350 1.21765 0.79932 0.72607 0.86490 1.93028 1.81444 1.48271 1.96998 1.93006 1.74409 1.96213 1.54197 1.93390 1.68853 1.54397 1.96286 0.92839 0.77169 0.85482 0.83570 0.73134 0.83322 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.72 9.06 21.45 0.19 -46.53 15 2 C 0.03 1.59 5.14 84.66 0.44 2.02 15 3 Si 0.96 40.93 29.54 68.60 2.03 42.95 15 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 5 H -0.29 -12.09 7.11 99.48 0.71 -11.38 15 6 H -0.26 -10.81 7.11 99.48 0.71 -10.11 15 7 C -0.59 -29.55 7.31 25.60 0.19 -29.37 15 8 H 0.08 3.93 6.05 -2.91 -0.02 3.92 15 9 C 0.26 12.48 0.47 -12.29 -0.01 12.47 15 10 O -0.56 -26.77 11.24 -148.98 -1.67 -28.44 15 11 C -0.13 -5.38 4.41 -19.85 -0.09 -5.47 15 12 C -0.08 -3.09 8.58 22.26 0.19 -2.90 15 13 C -0.15 -4.75 9.99 22.37 0.22 -4.52 15 14 C 0.10 2.97 6.70 22.51 0.15 3.13 15 15 O -0.50 -11.43 13.50 -92.44 -1.25 -12.68 15 16 C -0.15 -4.47 9.99 22.37 0.22 -4.25 15 17 C -0.09 -3.27 9.06 22.25 0.20 -3.07 15 18 C 0.45 22.72 2.36 71.98 0.17 22.89 15 19 F -0.22 -10.39 16.73 44.97 0.75 -9.64 15 20 F -0.20 -9.65 16.48 44.97 0.74 -8.91 15 21 F -0.15 -8.33 12.85 44.97 0.58 -7.76 15 22 H 0.26 13.89 8.31 -92.71 -0.77 13.12 15 23 H 0.38 15.77 9.03 -74.06 -0.67 15.10 15 24 H 0.13 4.97 6.44 -2.91 -0.02 4.95 15 25 H 0.15 3.70 8.06 -2.91 -0.02 3.67 15 26 H 0.41 4.99 9.06 -74.06 -0.67 4.32 15 27 H 0.15 3.53 8.06 -2.91 -0.02 3.50 15 28 H 0.13 4.52 7.48 -2.91 -0.02 4.50 15 Total: -1.00 -61.99 257.21 2.96 -59.03 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -0.09 Total: 21.04 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 1.69 Total: -9.06 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.19 Total: -46.53 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -2.92 Total: -41.12 kcal Atomic # 9 Polarization: -28.38 SS G_CDS: 2.07 Total: -26.31 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Total: -61.99 2.96 -59.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260237495.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.752 kcal (2) G-P(sol) polarization free energy of solvation -61.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds