Wall clock time and date at job start Mon Mar 30 2020 06:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99642 * 2 1 4 4 H 1.48508 * 109.47156 * 240.00130 * 3 2 1 5 5 H 1.48491 * 109.47139 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47113 * 120.00491 * 3 2 1 7 7 C 1.37883 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99762 * 170.33555 * 7 2 1 9 9 C 1.50702 * 119.99660 * 350.33501 * 7 2 1 10 10 C 1.50697 * 115.55001 * 324.16014 * 9 7 2 11 11 C 1.36507 * 120.17997 * 100.69151 * 10 9 7 12 12 C 1.38923 * 120.62410 * 179.89732 * 11 10 9 13 13 C 1.36631 * 120.81391 * 359.69759 * 12 11 10 14 14 C 1.39241 * 119.84883 * 359.97438 * 13 12 11 15 15 N 1.37048 * 133.84085 * 180.02562 * 14 13 12 16 16 H 0.97003 * 125.44975 * 0.02562 * 15 14 13 17 17 N 1.39863 * 109.10108 * 179.75280 * 15 14 13 18 18 C 1.30304 * 110.08789 * 0.24292 * 17 15 14 19 19 Cl 1.73601 * 126.11958 * 180.02562 * 18 17 15 20 20 C 1.39887 * 120.17714 * 280.09794 * 10 9 7 21 21 C 1.52997 * 117.51423 * 109.86400 * 9 7 2 22 22 C 1.52997 * 117.49316 * 178.49224 * 9 7 2 23 23 H 0.96997 * 120.00066 * 354.99723 * 1 2 3 24 24 H 1.07998 * 119.68661 * 359.54916 * 11 10 9 25 25 H 1.08003 * 119.59074 * 179.67365 * 12 11 10 26 26 H 1.08008 * 120.07133 * 179.97438 * 13 12 11 27 27 H 1.09005 * 117.49637 * 214.96465 * 21 9 7 28 28 H 1.08994 * 117.50359 * 359.97438 * 21 9 7 29 29 H 1.09003 * 117.50463 * 359.97061 * 22 9 7 30 30 H 1.09001 * 117.50026 * 145.00217 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0732 -1.2005 -0.1576 9 6 1.2672 -2.4900 0.2180 10 6 0.1171 -2.4275 1.1898 11 6 -1.1659 -2.3487 0.7305 12 6 -2.2332 -2.2927 1.6181 13 6 -2.0231 -2.3215 2.9679 14 6 -0.7256 -2.4084 3.4657 15 7 -0.1945 -2.4567 4.7281 16 1 -0.7032 -2.4352 5.5537 17 7 1.1981 -2.5482 4.6355 18 6 1.5641 -2.5544 3.3850 19 17 3.1941 -2.6551 2.7962 20 6 0.3579 -2.4624 2.5674 21 6 1.1322 -3.4365 -0.9764 22 6 2.0829 -3.7835 0.1710 23 1 -0.4850 0.8368 0.0733 24 1 -1.3528 -2.3239 -0.3329 25 1 -3.2413 -2.2253 1.2365 26 1 -2.8617 -2.2769 3.6472 27 1 0.2115 -4.0142 -1.0593 28 1 1.5764 -3.1219 -1.9207 29 1 3.1529 -3.6972 -0.0184 30 1 1.7878 -4.5894 0.8430 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260247941.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:46 Heat of formation + Delta-G solvation = 108.716351 kcal Electronic energy + Delta-G solvation = -17640.111217 eV Core-core repulsion = 14849.506427 eV Total energy + Delta-G solvation = -2790.604790 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.58296 -37.36744 -36.12858 -35.25973 -32.10414 -31.24403 -29.17132 -28.43107 -25.61915 -22.65883 -21.95905 -21.13025 -20.64727 -19.41744 -17.29096 -16.28902 -15.49958 -14.68632 -14.63429 -14.39646 -14.33220 -13.78799 -13.14687 -13.08031 -11.96128 -11.62822 -11.29312 -11.18852 -11.02179 -10.96308 -10.78331 -10.69574 -10.40388 -10.28221 -9.91292 -9.43259 -9.36630 -8.99225 -8.69453 -8.16327 -7.86634 -7.12628 -5.94566 -4.06479 1.66821 2.14475 2.41886 3.00071 3.31272 3.36417 3.40649 3.58387 4.41028 4.71497 4.98411 5.25279 5.38718 5.56412 5.69422 5.91152 6.00813 6.18704 6.30231 6.51385 6.56770 6.66875 6.71766 6.88281 7.00056 7.12546 7.31807 7.41833 7.66037 7.78594 7.84861 7.91264 8.05122 8.34584 8.87813 9.52002 10.98368 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.011208 C = 0.009903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.760723 B = 2497.673241 C = 2826.692911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.476 4.476 8 H 0.064 0.936 9 C 0.079 3.921 10 C 0.110 3.890 11 C -0.103 4.103 12 C -0.065 4.065 13 C -0.180 4.180 14 C 0.122 3.878 15 N -0.513 5.513 16 H 0.435 0.565 17 N -0.268 5.268 18 C 0.168 3.832 19 Cl 0.026 6.974 20 C -0.157 4.157 21 C -0.203 4.203 22 C -0.193 4.193 23 H 0.261 0.739 24 H 0.122 0.878 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 -4.991 4.637 7.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.130 4.130 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.513 4.513 8 H 0.082 0.918 9 C 0.078 3.922 10 C 0.107 3.893 11 C -0.122 4.122 12 C -0.086 4.086 13 C -0.202 4.202 14 C 0.009 3.991 15 N -0.232 5.232 16 H 0.279 0.721 17 N -0.087 5.087 18 C -0.035 4.035 19 Cl 0.054 6.946 20 C -0.165 4.165 21 C -0.241 4.241 22 C -0.231 4.231 23 H 0.071 0.929 24 H 0.140 0.860 25 H 0.134 0.866 26 H 0.129 0.871 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.162 -4.894 5.707 7.822 hybrid contribution -0.004 1.199 -0.269 1.229 sum -2.165 -3.695 5.438 6.922 Atomic orbital electron populations 1.70042 1.05606 1.26855 1.47653 1.24918 0.94821 0.98854 0.94411 0.86806 0.79944 0.83522 0.78824 1.20117 1.21323 1.20085 1.20297 0.93313 0.88337 1.49392 0.91800 1.17732 0.92311 0.89944 0.92212 1.18490 0.94367 0.86933 0.89480 1.20273 0.91015 1.01314 0.99611 1.20627 0.98886 0.96810 0.92228 1.19428 0.92076 1.13033 0.95712 1.18645 0.94803 1.00754 0.84884 1.45423 1.02212 1.69524 1.05996 0.72055 1.76356 0.91989 1.22000 1.18337 1.23771 0.88460 1.00751 0.90500 1.98388 1.13961 1.96055 1.86173 1.19261 0.89166 1.13693 0.94390 1.23101 0.99599 1.06699 0.94653 1.22874 0.96862 1.00838 1.02502 0.92877 0.85962 0.86626 0.87060 0.91506 0.90128 0.90341 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.89 10.42 55.43 0.58 -22.31 16 2 C 0.07 1.94 5.26 -17.82 -0.09 1.85 16 3 Si 0.88 20.79 29.55 -169.99 -5.02 15.77 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.48 -12.23 8.67 -34.44 -0.30 -12.53 16 8 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 9 C 0.08 1.83 1.10 -156.82 -0.17 1.66 16 10 C 0.11 2.52 3.75 -104.63 -0.39 2.12 16 11 C -0.10 -2.18 7.39 -39.95 -0.30 -2.48 16 12 C -0.06 -1.18 9.96 -39.91 -0.40 -1.58 16 13 C -0.18 -3.16 10.03 -39.79 -0.40 -3.56 16 14 C 0.12 2.40 7.33 -84.17 -0.62 1.79 16 15 N -0.51 -9.03 7.37 32.36 0.24 -8.79 16 16 H 0.44 5.80 8.96 -182.77 -1.64 4.16 16 17 N -0.27 -5.35 12.55 34.13 0.43 -4.92 16 18 C 0.17 3.60 8.06 -15.09 -0.12 3.48 16 19 Cl 0.03 0.52 26.26 -51.86 -1.36 -0.84 16 20 C -0.16 -3.50 6.13 -105.18 -0.65 -4.14 16 21 C -0.20 -4.32 9.51 -26.73 -0.25 -4.57 16 22 C -0.19 -4.01 8.05 -26.73 -0.22 -4.23 16 23 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 24 H 0.12 2.65 7.87 -52.49 -0.41 2.24 16 25 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 26 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 27 H 0.07 1.33 7.98 -51.93 -0.41 0.92 16 28 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 274.24 15.07 4.13 4.13 Total: -1.00 -27.85 274.24 -9.04 -36.89 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.13 Total: 2.27 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -3.90 Total: -22.20 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 1.24 Total: -36.03 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -1.36 Total: -0.84 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.85 -9.04 -36.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260247941.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.603 kcal (2) G-P(sol) polarization free energy of solvation -27.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds