Wall clock time and date at job start Mon Mar 30 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00441 * 2 1 4 4 H 1.48495 * 109.47386 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47472 * 300.00703 * 3 2 1 6 6 H 1.48506 * 109.46685 * 60.00338 * 3 2 1 7 7 C 1.37876 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00548 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.47438 * 180.02562 * 9 7 2 11 11 C 1.36602 * 120.18610 * 270.02313 * 10 9 7 12 12 O 1.35898 * 119.56496 * 359.97438 * 11 10 9 13 13 C 1.39803 * 120.86962 * 179.97438 * 11 10 9 14 14 C 1.36014 * 120.93151 * 0.02562 * 13 11 10 15 15 C 1.40564 * 119.73063 * 359.72434 * 14 13 11 16 16 C 1.40519 * 121.20652 * 179.68644 * 15 14 13 17 17 C 1.36206 * 119.65957 * 180.28062 * 16 15 14 18 18 Cl 1.73603 * 119.51299 * 180.30243 * 17 16 15 19 19 C 1.39482 * 120.97246 * 0.27766 * 17 16 15 20 20 C 1.36069 * 120.97370 * 0.02562 * 19 17 16 21 21 C 1.40423 * 120.18894 * 89.99835 * 10 9 7 22 22 H 0.96996 * 119.99536 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47283 * 60.00793 * 9 7 2 24 24 H 1.09003 * 109.47266 * 299.99963 * 9 7 2 25 25 H 0.96699 * 114.00365 * 89.99499 * 12 11 10 26 26 H 1.08003 * 119.53169 * 180.02562 * 13 11 10 27 27 H 1.07991 * 120.13796 * 180.02562 * 14 13 11 28 28 H 1.08002 * 120.17195 * 0.56126 * 16 15 14 29 29 H 1.08006 * 119.51316 * 180.02562 * 19 17 16 30 30 H 1.07994 * 120.16039 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2301 -3.6447 -0.0005 11 6 2.6768 -4.1665 -1.1813 12 8 2.2319 -3.6462 -2.3553 13 6 3.5855 -5.2288 -1.1980 14 6 4.0484 -5.7711 -0.0397 15 6 3.6142 -5.2556 1.1938 16 6 4.0673 -5.7963 2.4090 17 6 3.6215 -5.2760 3.5862 18 17 4.1899 -5.9418 5.0853 19 6 2.7154 -4.2158 3.6049 20 6 2.2505 -3.6713 2.4478 21 6 2.6890 -4.1815 1.2132 22 1 -0.4849 0.8400 0.0004 23 1 0.6240 -2.5568 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.7744 -2.9213 -2.6949 26 1 3.9247 -5.6244 -2.1440 27 1 4.7505 -6.5911 -0.0676 28 1 4.7690 -6.6173 2.4096 29 1 2.3777 -3.8211 4.5519 30 1 1.5489 -2.8509 2.4776 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260274210.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:49 Heat of formation + Delta-G solvation = -21.055448 kcal Electronic energy + Delta-G solvation = -16719.695036 eV Core-core repulsion = 13891.170167 eV Total energy + Delta-G solvation = -2828.524869 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.22007 -37.76795 -36.38049 -34.55873 -33.93419 -32.13380 -29.81661 -28.87774 -26.94013 -23.58625 -22.91308 -22.42997 -20.12304 -18.22600 -16.88169 -16.65941 -16.32718 -15.46544 -14.66473 -14.58332 -14.06661 -13.74589 -13.46514 -13.07169 -12.85248 -12.45793 -12.07969 -11.82242 -11.56145 -11.22417 -11.17097 -10.84384 -10.66480 -10.50573 -10.36035 -10.18948 -9.77864 -9.43078 -9.04106 -8.50983 -8.12390 -7.27351 -6.12956 -4.18662 0.85637 1.22866 2.27428 2.41308 3.17050 3.22824 3.31633 3.35266 4.30741 4.42599 4.86527 4.92775 5.11540 5.21085 5.31848 5.41346 5.55264 5.63446 5.76964 6.06991 6.19719 6.26189 6.44390 6.57799 6.63044 6.78728 6.93798 7.12296 7.22667 7.48529 7.67301 7.82065 8.18344 8.31438 8.86516 9.45858 10.96074 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.006613 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.642944 B = 4232.767884 C = 5300.720129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.039 4.039 11 C 0.084 3.916 12 O -0.492 6.492 13 C -0.119 4.119 14 C -0.127 4.127 15 C -0.047 4.047 16 C -0.108 4.108 17 C -0.027 4.027 18 Cl -0.088 7.088 19 C -0.136 4.136 20 C -0.057 4.057 21 C -0.042 4.042 22 H 0.263 0.737 23 H 0.043 0.957 24 H 0.032 0.968 25 H 0.388 0.612 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.460 -9.970 3.440 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.011 3.989 10 C -0.039 4.039 11 C 0.039 3.961 12 O -0.302 6.302 13 C -0.138 4.138 14 C -0.145 4.145 15 C -0.048 4.048 16 C -0.126 4.126 17 C -0.053 4.053 18 Cl -0.060 7.060 19 C -0.154 4.154 20 C -0.075 4.075 21 C -0.043 4.043 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.243 0.757 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.910 -10.332 3.629 12.948 hybrid contribution 0.928 1.253 0.062 1.561 sum 7.837 -9.078 3.691 12.549 Atomic orbital electron populations 1.69961 1.06011 1.26862 1.49892 1.24979 0.94842 0.99161 0.95012 0.86513 0.80093 0.83555 0.77768 1.19708 1.20860 1.20865 1.20983 0.92838 0.89597 1.51794 0.92609 1.18345 0.92507 0.88844 0.99172 1.20943 0.96830 0.95624 0.90530 1.17937 0.96889 0.95464 0.85805 1.84731 1.55497 1.54022 1.35946 1.21119 0.96843 0.97268 0.98529 1.20595 1.01837 1.01092 0.90985 1.17924 0.97579 0.96206 0.93066 1.20741 1.01054 1.00651 0.90191 1.20551 1.00322 0.98154 0.86300 1.98337 1.88446 1.85232 1.33955 1.20647 0.98713 0.96642 0.99436 1.21362 0.97703 0.98062 0.90376 1.18010 0.96890 0.95388 0.93967 0.92745 0.93892 0.94977 0.75668 0.85976 0.85829 0.85200 0.85330 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -13.49 9.09 -34.44 -0.31 -13.80 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.18 4.39 -29.03 -0.13 1.05 16 10 C -0.04 -0.82 5.09 -104.39 -0.53 -1.35 16 11 C 0.08 1.60 6.63 -39.59 -0.26 1.34 16 12 O -0.49 -9.24 12.44 -19.42 -0.24 -9.48 16 13 C -0.12 -1.89 9.88 -39.80 -0.39 -2.29 16 14 C -0.13 -1.90 9.76 -39.50 -0.39 -2.29 16 15 C -0.05 -0.79 5.74 -106.81 -0.61 -1.41 16 16 C -0.11 -1.59 9.51 -39.45 -0.38 -1.96 16 17 C -0.03 -0.40 6.28 -39.85 -0.25 -0.65 16 18 Cl -0.09 -1.15 28.91 -51.86 -1.50 -2.64 16 19 C -0.14 -2.15 9.72 -39.90 -0.39 -2.54 16 20 C -0.06 -1.05 9.28 -39.48 -0.37 -1.41 16 21 C -0.04 -0.82 5.74 -106.84 -0.61 -1.43 16 22 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 23 H 0.04 1.15 7.48 -51.93 -0.39 0.76 16 24 H 0.03 0.82 6.42 -51.93 -0.33 0.49 16 25 H 0.39 5.98 9.06 45.56 0.41 6.39 16 26 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 27 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 29 H 0.13 1.78 8.06 -52.48 -0.42 1.35 16 30 H 0.15 2.91 6.36 -52.49 -0.33 2.57 16 LS Contribution 279.66 15.07 4.21 4.21 Total: -1.00 -28.85 279.66 -8.40 -37.25 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -1.88 Total: 4.67 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -4.72 Total: -25.17 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.74 Total: -24.46 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.24 Total: -9.48 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.85 -8.40 -37.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260274210.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.192 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds