Wall clock time and date at job start Mon Mar 30 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00441 * 2 1 4 4 H 1.48495 * 109.47386 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47472 * 300.00703 * 3 2 1 6 6 H 1.48506 * 109.46685 * 60.00338 * 3 2 1 7 7 C 1.37876 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00548 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.47438 * 180.02562 * 9 7 2 11 11 C 1.36602 * 120.18610 * 270.02313 * 10 9 7 12 12 O 1.35898 * 119.56496 * 359.97438 * 11 10 9 13 13 C 1.39803 * 120.86962 * 179.97438 * 11 10 9 14 14 C 1.36014 * 120.93151 * 0.02562 * 13 11 10 15 15 C 1.40564 * 119.73063 * 359.72434 * 14 13 11 16 16 C 1.40519 * 121.20652 * 179.68644 * 15 14 13 17 17 C 1.36206 * 119.65957 * 180.28062 * 16 15 14 18 18 Cl 1.73603 * 119.51299 * 180.30243 * 17 16 15 19 19 C 1.39482 * 120.97246 * 0.27766 * 17 16 15 20 20 C 1.36069 * 120.97370 * 0.02562 * 19 17 16 21 21 C 1.40423 * 120.18894 * 89.99835 * 10 9 7 22 22 H 0.96996 * 119.99536 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47283 * 60.00793 * 9 7 2 24 24 H 1.09003 * 109.47266 * 299.99963 * 9 7 2 25 25 H 0.96699 * 114.00365 * 89.99499 * 12 11 10 26 26 H 1.08003 * 119.53169 * 180.02562 * 13 11 10 27 27 H 1.07991 * 120.13796 * 180.02562 * 14 13 11 28 28 H 1.08002 * 120.17195 * 0.56126 * 16 15 14 29 29 H 1.08006 * 119.51316 * 180.02562 * 19 17 16 30 30 H 1.07994 * 120.16039 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2301 -3.6447 -0.0005 11 6 2.6768 -4.1665 -1.1813 12 8 2.2319 -3.6462 -2.3553 13 6 3.5855 -5.2288 -1.1980 14 6 4.0484 -5.7711 -0.0397 15 6 3.6142 -5.2556 1.1938 16 6 4.0673 -5.7963 2.4090 17 6 3.6215 -5.2760 3.5862 18 17 4.1899 -5.9418 5.0853 19 6 2.7154 -4.2158 3.6049 20 6 2.2505 -3.6713 2.4478 21 6 2.6890 -4.1815 1.2132 22 1 -0.4849 0.8400 0.0004 23 1 0.6240 -2.5568 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.7744 -2.9213 -2.6949 26 1 3.9247 -5.6244 -2.1440 27 1 4.7505 -6.5911 -0.0676 28 1 4.7690 -6.6173 2.4096 29 1 2.3777 -3.8211 4.5519 30 1 1.5489 -2.8509 2.4776 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260274210.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:49 Heat of formation + Delta-G solvation = -37.705743 kcal Electronic energy + Delta-G solvation = -16720.417047 eV Core-core repulsion = 13891.170167 eV Total energy + Delta-G solvation = -2829.246880 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.050 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.56007 -39.12383 -37.54820 -35.85589 -35.72042 -33.85268 -31.21377 -30.30728 -28.62803 -25.35928 -24.30239 -23.76142 -21.59430 -19.59793 -18.53949 -18.17976 -17.88643 -16.83824 -16.52198 -15.89447 -15.44321 -15.11105 -14.74061 -14.45359 -14.33570 -14.20216 -13.47582 -13.25342 -13.12507 -12.79236 -12.72191 -12.42011 -12.36856 -11.87819 -11.83117 -11.64542 -11.56429 -11.02048 -10.61010 -10.51870 -9.41019 -8.68049 -8.17808 -6.33482 -0.44494 -0.07528 1.07865 1.12441 1.38297 1.40114 1.51935 1.87947 2.39037 3.05327 3.11203 3.50388 3.68757 3.90894 4.09351 4.14032 4.31263 4.36747 4.38082 4.77961 4.91582 4.94933 5.14883 5.20812 5.26032 5.38307 5.40697 5.48379 5.73611 5.76904 5.89596 5.96123 6.15604 6.78761 6.94906 7.35118 8.89286 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.006613 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.642944 B = 4232.767884 C = 5300.720129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.517 4.517 8 H 0.053 0.947 9 C 0.064 3.936 10 C -0.087 4.087 11 C 0.083 3.917 12 O -0.507 6.507 13 C -0.127 4.127 14 C -0.099 4.099 15 C -0.063 4.063 16 C -0.089 4.089 17 C -0.037 4.037 18 Cl -0.064 7.064 19 C -0.120 4.120 20 C -0.092 4.092 21 C -0.056 4.056 22 H 0.265 0.735 23 H 0.006 0.994 24 H 0.006 0.994 25 H 0.399 0.601 26 H 0.156 0.844 27 H 0.173 0.827 28 H 0.168 0.832 29 H 0.144 0.856 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.409 -11.799 3.934 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.027 3.973 10 C -0.088 4.088 11 C 0.038 3.962 12 O -0.319 6.319 13 C -0.145 4.145 14 C -0.117 4.117 15 C -0.063 4.063 16 C -0.107 4.107 17 C -0.064 4.064 18 Cl -0.035 7.035 19 C -0.138 4.138 20 C -0.111 4.111 21 C -0.056 4.056 22 H 0.074 0.926 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.257 0.743 26 H 0.173 0.827 27 H 0.190 0.810 28 H 0.186 0.814 29 H 0.162 0.838 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.872 -12.165 4.123 16.200 hybrid contribution 0.048 1.694 -0.012 1.695 sum 9.920 -10.470 4.111 14.998 Atomic orbital electron populations 1.70091 1.07675 1.27796 1.51240 1.25843 0.95608 1.02805 0.94655 0.85453 0.78987 0.79104 0.77860 1.18883 1.20217 1.20507 1.21225 0.92705 0.90712 1.50898 0.92905 1.17934 0.92727 0.90569 0.96020 1.20674 0.98808 0.96579 0.92714 1.18292 0.96907 0.96067 0.84896 1.84673 1.56563 1.54671 1.36005 1.21342 0.96262 0.96290 1.00647 1.21143 1.00450 1.00601 0.89464 1.18202 0.97344 0.95729 0.95035 1.21101 1.00172 1.00458 0.88981 1.20601 1.00164 0.97939 0.87698 1.98348 1.88041 1.84722 1.32427 1.20812 0.97746 0.96188 0.99051 1.21160 0.99275 0.99006 0.91622 1.18129 0.97776 0.96522 0.93187 0.92627 0.97575 0.97546 0.74315 0.82668 0.81001 0.81446 0.83786 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.17 13.29 21.45 0.28 -54.88 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.96 43.36 29.54 68.60 2.03 45.38 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.52 -28.55 9.09 25.60 0.23 -28.32 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.06 3.42 4.39 29.10 0.13 3.54 16 10 C -0.09 -3.85 5.09 -19.71 -0.10 -3.95 16 11 C 0.08 3.18 6.63 22.27 0.15 3.33 16 12 O -0.51 -19.53 12.44 -92.40 -1.15 -20.68 16 13 C -0.13 -3.69 9.88 22.13 0.22 -3.47 16 14 C -0.10 -2.54 9.76 22.32 0.22 -2.32 16 15 C -0.06 -1.94 5.74 -21.28 -0.12 -2.07 16 16 C -0.09 -2.27 9.51 22.35 0.21 -2.06 16 17 C -0.04 -1.02 6.28 22.10 0.14 -0.88 16 18 Cl -0.06 -1.45 28.91 -2.72 -0.08 -1.53 16 19 C -0.12 -3.73 9.72 22.07 0.21 -3.51 16 20 C -0.09 -3.55 9.28 22.34 0.21 -3.34 16 21 C -0.06 -2.20 5.74 -21.30 -0.12 -2.32 16 22 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 23 H 0.01 0.35 7.48 -2.39 -0.02 0.33 16 24 H 0.01 0.36 6.42 -2.39 -0.02 0.35 16 25 H 0.40 12.69 9.06 -74.06 -0.67 12.02 16 26 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 27 H 0.17 2.79 8.06 -2.92 -0.02 2.76 16 28 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 30 H 0.12 5.21 6.36 -2.91 -0.02 5.19 16 Total: -1.00 -65.60 279.66 3.43 -62.17 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.51 Total: 13.92 kcal Atomic # 6 Polarization: -46.21 SS G_CDS: 1.83 Total: -44.38 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.28 Total: -54.88 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -1.15 Total: -20.68 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -65.60 3.43 -62.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260274210.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.465 kcal (2) G-P(sol) polarization free energy of solvation -65.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds