Wall clock time and date at job start Mon Mar 30 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42903 * 109.47006 * 59.71863 * 9 7 2 11 11 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 12 12 C 1.38285 * 119.97667 * 29.72154 * 11 9 7 13 13 C 1.38245 * 120.11180 * 179.72525 * 12 11 9 14 14 C 1.38157 * 120.05505 * 0.55132 * 13 12 11 15 15 C 1.38709 * 119.94390 * 359.72535 * 14 13 12 16 16 O 1.35903 * 120.05635 * 179.97438 * 15 14 13 17 17 C 1.38120 * 119.96612 * 209.99849 * 11 9 7 18 18 C 1.52996 * 109.46842 * 299.71996 * 9 7 2 19 19 F 1.39901 * 109.47523 * 60.00129 * 18 9 7 20 20 F 1.39899 * 109.47041 * 179.97438 * 18 9 7 21 21 F 1.39900 * 109.47321 * 299.99924 * 18 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 0.96697 * 113.99557 * 60.00730 * 10 9 7 24 24 H 1.08005 * 119.93758 * 359.97438 * 12 11 9 25 25 H 1.08004 * 119.96647 * 180.25628 * 13 12 11 26 26 H 1.08004 * 120.02877 * 179.70374 * 14 13 12 27 27 H 0.96702 * 113.99691 * 270.02740 * 16 15 14 28 28 H 1.08001 * 120.03532 * 0.02562 * 17 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4294 -2.5696 -1.1725 11 6 2.2302 -3.6447 -0.0104 12 6 3.4698 -3.4965 0.5843 13 6 4.3682 -4.5473 0.5863 14 6 4.0336 -5.7447 -0.0161 15 6 2.7930 -5.8940 -0.6183 16 8 2.4618 -7.0708 -1.2120 17 6 1.8909 -4.8397 -0.6140 18 6 0.3713 -2.5857 1.2434 19 9 -0.5378 -1.5224 1.2482 20 9 -0.3288 -3.7970 1.2377 21 9 1.1755 -2.5168 2.3861 22 1 -0.4850 0.8401 -0.0004 23 1 0.9216 -2.5207 -2.0034 24 1 3.7350 -2.5595 1.0515 25 1 5.3341 -4.4303 1.0551 26 1 4.7376 -6.5638 -0.0185 27 1 2.7020 -7.1207 -2.1474 28 1 0.9245 -4.9535 -1.0826 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260285273.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:31 Heat of formation + Delta-G solvation = -194.245098 kcal Electronic energy + Delta-G solvation = -20871.717612 eV Core-core repulsion = 17053.116771 eV Total energy + Delta-G solvation = -3818.600841 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.47294 -46.15365 -45.67302 -39.38534 -37.02294 -35.40921 -32.54270 -30.89453 -29.55064 -27.46896 -24.78294 -22.62780 -22.00301 -20.39741 -17.98232 -17.75090 -16.78066 -16.67356 -15.95119 -15.82997 -15.10965 -14.89856 -14.76239 -14.18977 -13.36977 -13.23351 -12.99141 -12.64222 -12.53307 -12.30886 -12.12526 -12.01128 -11.89660 -11.48770 -11.42141 -11.04792 -10.92233 -10.67550 -10.38516 -10.22525 -9.39487 -8.96832 -8.63071 -8.29881 -8.10648 -6.16626 -4.51151 1.70187 1.78195 3.17086 3.24887 3.27188 4.01108 4.19878 4.31873 4.54391 4.94676 5.14753 5.24074 5.40495 5.58118 5.81188 5.89192 6.01379 6.16166 6.28743 6.45024 6.64386 6.82463 6.88864 7.16015 7.26212 7.57933 7.65031 7.95437 8.45142 8.84854 9.23468 10.70562 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.024630 B = 0.008973 C = 0.007889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.561331 B = 3119.855985 C = 3548.554541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.075 3.925 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.260 3.740 10 O -0.544 6.544 11 C -0.083 4.083 12 C -0.092 4.092 13 C -0.119 4.119 14 C -0.152 4.152 15 C 0.086 3.914 16 O -0.502 6.502 17 C -0.125 4.125 18 C 0.457 3.543 19 F -0.130 7.130 20 F -0.218 7.218 21 F -0.197 7.197 22 H 0.264 0.736 23 H 0.369 0.631 24 H 0.138 0.862 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.383 0.617 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.682 -6.078 -1.781 8.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.136 4.136 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.616 4.616 8 H 0.097 0.903 9 C 0.219 3.781 10 O -0.349 6.349 11 C -0.084 4.084 12 C -0.110 4.110 13 C -0.137 4.137 14 C -0.171 4.171 15 C 0.042 3.958 16 O -0.311 6.311 17 C -0.143 4.143 18 C 0.402 3.598 19 F -0.111 7.111 20 F -0.200 7.200 21 F -0.179 7.179 22 H 0.075 0.925 23 H 0.215 0.785 24 H 0.156 0.844 25 H 0.139 0.861 26 H 0.137 0.863 27 H 0.237 0.763 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.757 -6.146 -0.734 7.806 hybrid contribution 0.901 0.935 -0.630 1.443 sum 5.658 -5.211 -1.364 7.812 Atomic orbital electron populations 1.70485 1.05763 1.26726 1.41629 1.25163 0.94991 0.99929 0.93487 0.86389 0.79864 0.82246 0.78382 1.20232 1.20831 1.19500 1.21355 0.93768 0.88586 1.57888 0.90315 1.18251 0.84418 0.92134 0.83300 1.86407 1.37410 1.96265 1.14842 1.20689 0.96062 0.94829 0.96813 1.21363 0.92757 0.99090 0.97820 1.21014 0.99690 0.92920 1.00126 1.21281 0.95988 0.98069 1.01761 1.18413 0.93053 0.85344 0.99029 1.84828 1.84201 1.33915 1.28148 1.21371 1.00075 0.91736 1.01141 1.21363 0.79889 0.72997 0.85578 1.93427 1.68090 1.53426 1.96163 1.93048 1.81424 1.48614 1.96945 1.93023 1.74553 1.96243 1.54052 0.92496 0.78457 0.84409 0.86084 0.86284 0.76300 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.10 9.06 55.43 0.50 -21.60 15 2 C 0.08 1.93 5.14 -17.82 -0.09 1.84 15 3 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 15 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 6 H -0.27 -5.83 7.11 56.52 0.40 -5.42 15 7 C -0.58 -14.48 7.32 -34.44 -0.25 -14.74 15 8 H 0.08 1.89 6.01 -52.49 -0.32 1.57 15 9 C 0.26 6.24 0.47 -92.92 -0.04 6.20 15 10 O -0.54 -12.95 11.23 -35.23 -0.40 -13.34 15 11 C -0.08 -1.74 4.40 -104.65 -0.46 -2.20 15 12 C -0.09 -1.77 8.62 -39.56 -0.34 -2.11 15 13 C -0.12 -1.91 10.04 -39.61 -0.40 -2.31 15 14 C -0.15 -2.36 9.99 -39.44 -0.39 -2.76 15 15 C 0.09 1.44 6.70 -39.22 -0.26 1.18 15 16 O -0.50 -7.34 13.50 -19.43 -0.26 -7.60 15 17 C -0.12 -2.39 9.00 -39.43 -0.36 -2.75 15 18 C 0.46 11.68 2.36 37.16 0.09 11.77 15 19 F -0.13 -3.62 12.87 2.25 0.03 -3.59 15 20 F -0.22 -5.43 16.73 2.25 0.04 -5.39 15 21 F -0.20 -4.88 16.51 2.25 0.04 -4.85 15 22 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 23 H 0.37 7.50 9.03 45.56 0.41 7.92 15 24 H 0.14 2.69 6.40 -52.48 -0.34 2.35 15 25 H 0.12 1.57 8.06 -52.48 -0.42 1.15 15 26 H 0.12 1.53 8.06 -52.48 -0.42 1.11 15 27 H 0.38 3.56 9.06 45.56 0.41 3.97 15 28 H 0.13 2.55 7.48 -52.49 -0.39 2.15 15 LS Contribution 257.23 15.07 3.88 3.88 Total: -1.00 -29.76 257.23 -3.91 -33.67 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -0.20 Total: 9.90 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -2.51 Total: -5.87 kcal Atomic # 7 Polarization: -22.10 SS G_CDS: 0.50 Total: -21.60 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.66 Total: -20.94 kcal Atomic # 9 Polarization: -13.93 SS G_CDS: 0.10 Total: -13.83 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.76 -3.91 -33.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260285273.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.579 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds