Wall clock time and date at job start Mon Mar 30 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42903 * 109.47006 * 59.71863 * 9 7 2 11 11 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 12 12 C 1.38285 * 119.97667 * 29.72154 * 11 9 7 13 13 C 1.38245 * 120.11180 * 179.72525 * 12 11 9 14 14 C 1.38157 * 120.05505 * 0.55132 * 13 12 11 15 15 C 1.38709 * 119.94390 * 359.72535 * 14 13 12 16 16 O 1.35903 * 120.05635 * 179.97438 * 15 14 13 17 17 C 1.38120 * 119.96612 * 209.99849 * 11 9 7 18 18 C 1.52996 * 109.46842 * 299.71996 * 9 7 2 19 19 F 1.39901 * 109.47523 * 60.00129 * 18 9 7 20 20 F 1.39899 * 109.47041 * 179.97438 * 18 9 7 21 21 F 1.39900 * 109.47321 * 299.99924 * 18 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 0.96697 * 113.99557 * 60.00730 * 10 9 7 24 24 H 1.08005 * 119.93758 * 359.97438 * 12 11 9 25 25 H 1.08004 * 119.96647 * 180.25628 * 13 12 11 26 26 H 1.08004 * 120.02877 * 179.70374 * 14 13 12 27 27 H 0.96702 * 113.99691 * 270.02740 * 16 15 14 28 28 H 1.08001 * 120.03532 * 0.02562 * 17 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4294 -2.5696 -1.1725 11 6 2.2302 -3.6447 -0.0104 12 6 3.4698 -3.4965 0.5843 13 6 4.3682 -4.5473 0.5863 14 6 4.0336 -5.7447 -0.0161 15 6 2.7930 -5.8940 -0.6183 16 8 2.4618 -7.0708 -1.2120 17 6 1.8909 -4.8397 -0.6140 18 6 0.3713 -2.5857 1.2434 19 9 -0.5378 -1.5224 1.2482 20 9 -0.3288 -3.7970 1.2377 21 9 1.1755 -2.5168 2.3861 22 1 -0.4850 0.8401 -0.0004 23 1 0.9216 -2.5207 -2.0034 24 1 3.7350 -2.5595 1.0515 25 1 5.3341 -4.4303 1.0551 26 1 4.7376 -6.5638 -0.0185 27 1 2.7020 -7.1207 -2.1474 28 1 0.9245 -4.9535 -1.0826 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260285273.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:31 Heat of formation + Delta-G solvation = -216.099961 kcal Electronic energy + Delta-G solvation = -20872.665310 eV Core-core repulsion = 17053.116771 eV Total energy + Delta-G solvation = -3819.548539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.48733 -48.15109 -47.74881 -40.74894 -38.50650 -36.91042 -34.46711 -32.43560 -30.95827 -29.12803 -26.72430 -24.27357 -23.35954 -22.03068 -19.68792 -19.37571 -18.71652 -18.56828 -17.75118 -17.31540 -16.72398 -16.56225 -16.27932 -15.63066 -15.06101 -15.02938 -14.66112 -14.53848 -14.47079 -14.27658 -13.99958 -13.89130 -13.56336 -13.07985 -12.91808 -12.74294 -12.52861 -12.34984 -12.08276 -11.72439 -11.09682 -10.80895 -10.44923 -9.74297 -9.47086 -8.09811 -6.48771 0.34962 0.43281 1.44325 1.46512 1.56316 2.29828 2.37133 2.76173 3.02803 3.26099 3.31274 3.71219 3.85749 4.10543 4.21874 4.38635 4.54793 4.63483 4.80129 5.02548 5.09502 5.48132 5.51416 5.61829 5.66342 5.88133 5.98966 6.54457 6.91862 7.10341 7.30058 8.77729 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.024630 B = 0.008973 C = 0.007889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.561331 B = 3119.855985 C = 3548.554541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.029 3.971 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.258 3.742 10 O -0.559 6.559 11 C -0.105 4.105 12 C -0.111 4.111 13 C -0.106 4.106 14 C -0.142 4.142 15 C 0.093 3.907 16 O -0.506 6.506 17 C -0.141 4.141 18 C 0.446 3.554 19 F -0.147 7.147 20 F -0.218 7.218 21 F -0.196 7.196 22 H 0.261 0.739 23 H 0.380 0.620 24 H 0.127 0.873 25 H 0.158 0.842 26 H 0.156 0.844 27 H 0.408 0.592 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.001 -7.144 -2.028 10.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.179 4.179 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.621 4.621 8 H 0.104 0.896 9 C 0.217 3.783 10 O -0.366 6.366 11 C -0.106 4.106 12 C -0.130 4.130 13 C -0.124 4.124 14 C -0.161 4.161 15 C 0.049 3.951 16 O -0.319 6.319 17 C -0.160 4.160 18 C 0.391 3.609 19 F -0.129 7.129 20 F -0.200 7.200 21 F -0.178 7.178 22 H 0.071 0.929 23 H 0.228 0.772 24 H 0.145 0.855 25 H 0.175 0.825 26 H 0.174 0.826 27 H 0.267 0.733 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.095 -7.228 -1.010 10.179 hybrid contribution 0.195 1.121 -0.570 1.272 sum 7.291 -6.108 -1.580 9.641 Atomic orbital electron populations 1.70621 1.07214 1.27142 1.43284 1.25948 0.95637 1.03135 0.93171 0.85429 0.78722 0.78236 0.78549 1.19499 1.21310 1.18643 1.21668 0.94208 0.89224 1.56956 0.89643 1.18227 0.84403 0.93399 0.82270 1.86344 1.38257 1.96409 1.15560 1.20449 0.96335 0.94536 0.99275 1.21368 0.92961 0.99998 0.98624 1.21359 1.00273 0.91888 0.98900 1.21658 0.95750 0.98755 0.99886 1.18458 0.92953 0.85021 0.98654 1.84764 1.84434 1.32487 1.30243 1.21318 1.00399 0.92316 1.01933 1.21808 0.79986 0.72536 0.86585 1.93389 1.68830 1.54326 1.96307 1.93032 1.81514 1.48471 1.96993 1.93007 1.74391 1.96225 1.54134 0.92859 0.77203 0.85513 0.82471 0.82648 0.73332 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.07 9.06 21.45 0.19 -46.88 15 2 C 0.03 1.47 5.14 84.66 0.44 1.90 15 3 Si 0.97 40.65 29.54 68.60 2.03 42.68 15 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 5 H -0.29 -12.19 7.11 99.48 0.71 -11.48 15 6 H -0.26 -10.57 7.11 99.48 0.71 -9.87 15 7 C -0.58 -29.31 7.32 25.60 0.19 -29.13 15 8 H 0.09 4.07 6.01 -2.91 -0.02 4.05 15 9 C 0.26 12.54 0.47 -12.29 -0.01 12.53 15 10 O -0.56 -27.23 11.23 -148.98 -1.67 -28.90 15 11 C -0.11 -4.37 4.40 -19.88 -0.09 -4.46 15 12 C -0.11 -4.11 8.62 22.28 0.19 -3.91 15 13 C -0.11 -3.02 10.04 22.25 0.22 -2.80 15 14 C -0.14 -3.81 9.99 22.36 0.22 -3.59 15 15 C 0.09 2.90 6.70 22.51 0.15 3.05 15 16 O -0.51 -13.20 13.50 -92.46 -1.25 -14.45 15 17 C -0.14 -5.30 9.00 22.37 0.20 -5.10 15 18 C 0.45 23.26 2.36 71.98 0.17 23.43 15 19 F -0.15 -8.44 12.87 44.97 0.58 -7.86 15 20 F -0.22 -11.06 16.73 44.97 0.75 -10.31 15 21 F -0.20 -9.85 16.51 44.97 0.74 -9.10 15 22 H 0.26 13.90 8.31 -92.70 -0.77 13.13 15 23 H 0.38 15.87 9.03 -74.06 -0.67 15.20 15 24 H 0.13 4.86 6.40 -2.91 -0.02 4.84 15 25 H 0.16 3.30 8.06 -2.91 -0.02 3.27 15 26 H 0.16 3.08 8.06 -2.91 -0.02 3.05 15 27 H 0.41 6.17 9.06 -74.06 -0.67 5.50 15 28 H 0.12 4.64 7.48 -2.91 -0.02 4.62 15 Total: -1.00 -63.80 257.23 2.97 -60.83 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -0.09 Total: 22.07 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 1.69 Total: -8.08 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.19 Total: -46.88 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -2.92 Total: -43.35 kcal Atomic # 9 Polarization: -29.34 SS G_CDS: 2.07 Total: -27.27 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -63.80 2.97 -60.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260285273.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.266 kcal (2) G-P(sol) polarization free energy of solvation -63.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds