Wall clock time and date at job start Mon Mar 30 2020 06:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00137 * 2 1 4 4 H 1.48501 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47345 * 300.00490 * 3 2 1 6 6 H 1.48501 * 109.47047 * 60.00432 * 3 2 1 7 7 C 1.37876 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00704 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47185 * 179.97438 * 9 7 2 11 11 C 1.38284 * 119.92706 * 90.00111 * 10 9 7 12 12 C 1.38125 * 120.06673 * 179.72033 * 11 10 9 13 13 C 1.38846 * 119.92884 * 0.26159 * 12 11 10 14 14 N 1.40172 * 120.06368 * 180.02562 * 13 12 11 15 15 C 1.35863 * 126.09850 * 179.71690 * 14 13 12 16 16 C 1.35383 * 107.60593 * 179.83985 * 15 14 13 17 17 Cl 1.73594 * 126.02257 * 180.15939 * 16 15 14 18 18 C 1.39966 * 107.95593 * 0.42166 * 16 15 14 19 19 N 1.30870 * 108.36478 * 359.73611 * 18 16 15 20 20 C 1.38838 * 119.86812 * 359.97438 * 13 12 11 21 21 C 1.38120 * 119.93126 * 0.02562 * 20 13 12 22 22 H 0.97001 * 119.99581 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46638 * 60.00720 * 9 7 2 24 24 H 1.08996 * 109.46892 * 300.00723 * 9 7 2 25 25 H 1.08002 * 119.97092 * 0.02562 * 11 10 9 26 26 H 1.07999 * 120.03580 * 180.23522 * 12 11 10 27 27 H 1.07997 * 126.19470 * 359.97438 * 15 14 13 28 28 H 1.07999 * 125.82226 * 179.74220 * 18 16 15 29 29 H 1.07997 * 120.03156 * 179.97438 * 20 13 12 30 30 H 1.08004 * 119.96601 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0018 11 6 2.6794 -4.1696 1.1961 12 6 3.5725 -5.2232 1.1983 13 6 4.0234 -5.7517 -0.0039 14 7 4.9293 -6.8213 -0.0050 15 6 5.4437 -7.4335 -1.1034 16 6 6.2774 -8.4104 -0.6749 17 17 7.1925 -9.4868 -1.6837 18 6 6.2670 -8.4035 0.7247 19 7 5.4612 -7.4537 1.1263 20 6 3.5743 -5.2193 -1.2049 21 6 2.6812 -4.1657 -1.2006 22 1 -0.4849 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6246 -2.5570 0.8896 25 1 2.3278 -3.7586 2.1309 26 1 3.9201 -5.6353 2.1341 27 1 5.2284 -7.1845 -2.1319 28 1 6.8283 -9.0685 1.3643 29 1 3.9236 -5.6280 -2.1416 30 1 2.3318 -3.7508 -2.1346 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260291334.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:49 Heat of formation + Delta-G solvation = 89.907342 kcal Electronic energy + Delta-G solvation = -15941.857675 eV Core-core repulsion = 13150.437265 eV Total energy + Delta-G solvation = -2791.420410 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.59787 -38.80081 -36.61016 -34.22171 -32.68717 -31.03101 -30.26871 -29.75889 -26.75666 -23.84291 -22.87236 -21.96313 -20.59482 -20.18444 -18.31740 -16.42670 -15.46242 -15.35711 -15.28074 -15.06461 -14.38166 -14.04773 -13.51521 -13.28399 -13.05255 -12.90470 -12.37711 -11.88187 -11.68478 -11.43436 -11.41931 -10.93969 -10.70428 -10.65606 -10.40612 -10.22466 -9.71006 -9.49143 -8.92923 -8.65585 -8.51904 -7.60695 -6.13827 -4.18727 0.97718 1.72177 1.77394 2.27571 2.38065 2.63182 3.23875 3.32113 3.36694 4.16996 4.39906 4.42066 4.55168 4.98278 5.09768 5.20917 5.31719 5.36384 5.68655 5.78694 5.88474 5.97391 6.16190 6.33330 6.55556 6.84883 6.92451 6.94182 7.33425 7.41274 7.47572 7.65002 7.81428 8.18593 8.86692 9.46140 10.95773 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.043654 B = 0.003538 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.255708 B = 7912.535782 C = 8027.515467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.045 3.955 10 C -0.028 4.028 11 C -0.104 4.104 12 C -0.109 4.109 13 C 0.108 3.892 14 N -0.295 5.295 15 C 0.071 3.929 16 C -0.187 4.187 17 Cl -0.044 7.044 18 C 0.062 3.938 19 N -0.276 5.276 20 C -0.131 4.131 21 C -0.101 4.101 22 H 0.263 0.737 23 H 0.032 0.968 24 H 0.032 0.968 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.185 0.815 28 H 0.194 0.806 29 H 0.121 0.879 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.056 -15.501 -2.175 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.009 3.991 10 C -0.029 4.029 11 C -0.122 4.122 12 C -0.129 4.129 13 C 0.017 3.983 14 N -0.070 5.070 15 C -0.075 4.075 16 C -0.225 4.225 17 Cl -0.016 7.016 18 C -0.125 4.125 19 N -0.096 5.096 20 C -0.152 4.152 21 C -0.119 4.119 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.149 0.851 26 H 0.147 0.853 27 H 0.202 0.798 28 H 0.210 0.790 29 H 0.139 0.861 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.420 -14.811 -1.241 17.597 hybrid contribution 0.975 0.375 -0.853 1.348 sum 10.395 -14.436 -2.094 17.912 Atomic orbital electron populations 1.69958 1.06052 1.26902 1.50158 1.25008 0.94897 0.99343 0.94987 0.86466 0.80131 0.83340 0.77721 1.19638 1.20866 1.20855 1.21067 0.93105 0.89688 1.51493 0.92317 1.18417 0.92494 0.89406 0.98808 1.20888 0.95540 0.94750 0.91716 1.21067 0.96908 0.95161 0.99096 1.20804 0.98518 0.97440 0.96147 1.17401 0.95130 0.89922 0.95800 1.45794 1.32838 1.24686 1.03697 1.22386 0.96396 0.94386 0.94282 1.20684 1.07611 1.02381 0.91799 1.98320 1.72550 1.62837 1.67858 1.23941 0.98084 0.97465 0.93001 1.77538 1.14034 1.10008 1.07969 1.20712 1.00434 0.98931 0.95106 1.20956 0.96836 0.95040 0.99117 0.92758 0.94958 0.94944 0.85128 0.85266 0.79792 0.78960 0.86076 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -13.76 9.09 -34.44 -0.31 -14.08 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.05 1.10 5.10 -29.03 -0.15 0.95 16 10 C -0.03 -0.57 5.07 -104.59 -0.53 -1.10 16 11 C -0.10 -1.89 9.69 -39.61 -0.38 -2.27 16 12 C -0.11 -1.83 9.66 -39.40 -0.38 -2.21 16 13 C 0.11 1.73 6.69 -83.60 -0.56 1.17 16 14 N -0.30 -4.37 3.82 -10.54 -0.04 -4.41 16 15 C 0.07 0.87 10.80 -16.78 -0.18 0.69 16 16 C -0.19 -2.16 6.65 -39.95 -0.27 -2.42 16 17 Cl -0.04 -0.43 29.30 -51.86 -1.52 -1.95 16 18 C 0.06 0.73 12.01 -17.31 -0.21 0.52 16 19 N -0.28 -4.04 11.87 30.65 0.36 -3.68 16 20 C -0.13 -1.99 9.46 -39.40 -0.37 -2.36 16 21 C -0.10 -1.76 9.69 -39.61 -0.38 -2.14 16 22 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 23 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 24 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 25 H 0.13 2.28 8.06 -52.49 -0.42 1.85 16 26 H 0.13 2.03 7.70 -52.49 -0.40 1.63 16 27 H 0.19 1.72 7.06 -52.49 -0.37 1.35 16 28 H 0.19 1.59 8.06 -52.49 -0.42 1.16 16 29 H 0.12 1.44 6.75 -52.49 -0.35 1.08 16 30 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 286.43 15.07 4.32 4.32 Total: -1.00 -29.16 286.43 -7.77 -36.93 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -2.78 Total: -0.63 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -3.82 Total: -21.74 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 1.06 Total: -32.79 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.52 Total: -1.95 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.16 -7.77 -36.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260291334.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.837 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds