Wall clock time and date at job start Mon Mar 30 2020 06:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00137 * 2 1 4 4 H 1.48501 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47345 * 300.00490 * 3 2 1 6 6 H 1.48501 * 109.47047 * 60.00432 * 3 2 1 7 7 C 1.37876 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00704 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47185 * 179.97438 * 9 7 2 11 11 C 1.38284 * 119.92706 * 90.00111 * 10 9 7 12 12 C 1.38125 * 120.06673 * 179.72033 * 11 10 9 13 13 C 1.38846 * 119.92884 * 0.26159 * 12 11 10 14 14 N 1.40172 * 120.06368 * 180.02562 * 13 12 11 15 15 C 1.35863 * 126.09850 * 179.71690 * 14 13 12 16 16 C 1.35383 * 107.60593 * 179.83985 * 15 14 13 17 17 Cl 1.73594 * 126.02257 * 180.15939 * 16 15 14 18 18 C 1.39966 * 107.95593 * 0.42166 * 16 15 14 19 19 N 1.30870 * 108.36478 * 359.73611 * 18 16 15 20 20 C 1.38838 * 119.86812 * 359.97438 * 13 12 11 21 21 C 1.38120 * 119.93126 * 0.02562 * 20 13 12 22 22 H 0.97001 * 119.99581 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46638 * 60.00720 * 9 7 2 24 24 H 1.08996 * 109.46892 * 300.00723 * 9 7 2 25 25 H 1.08002 * 119.97092 * 0.02562 * 11 10 9 26 26 H 1.07999 * 120.03580 * 180.23522 * 12 11 10 27 27 H 1.07997 * 126.19470 * 359.97438 * 15 14 13 28 28 H 1.07999 * 125.82226 * 179.74220 * 18 16 15 29 29 H 1.07997 * 120.03156 * 179.97438 * 20 13 12 30 30 H 1.08004 * 119.96601 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0018 11 6 2.6794 -4.1696 1.1961 12 6 3.5725 -5.2232 1.1983 13 6 4.0234 -5.7517 -0.0039 14 7 4.9293 -6.8213 -0.0050 15 6 5.4437 -7.4335 -1.1034 16 6 6.2774 -8.4104 -0.6749 17 17 7.1925 -9.4868 -1.6837 18 6 6.2670 -8.4035 0.7247 19 7 5.4612 -7.4537 1.1263 20 6 3.5743 -5.2193 -1.2049 21 6 2.6812 -4.1657 -1.2006 22 1 -0.4849 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6246 -2.5570 0.8896 25 1 2.3278 -3.7586 2.1309 26 1 3.9201 -5.6353 2.1341 27 1 5.2284 -7.1845 -2.1319 28 1 6.8283 -9.0685 1.3643 29 1 3.9236 -5.6280 -2.1416 30 1 2.3318 -3.7508 -2.1346 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260291334.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:49 Heat of formation + Delta-G solvation = 75.188224 kcal Electronic energy + Delta-G solvation = -15942.495943 eV Core-core repulsion = 13150.437265 eV Total energy + Delta-G solvation = -2792.058679 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.60528 -40.12413 -37.45525 -35.81185 -34.35214 -32.28842 -31.68526 -30.91091 -28.37091 -25.47148 -24.09974 -23.34613 -21.64011 -21.47830 -19.40244 -18.51076 -16.88533 -16.49239 -16.40604 -16.28566 -15.99352 -15.20495 -14.66641 -14.55189 -14.53914 -14.18015 -13.82741 -13.33287 -13.29762 -12.78999 -12.68045 -12.54324 -12.43970 -11.94214 -11.66775 -11.57840 -11.51252 -11.09681 -10.60969 -9.98918 -9.96287 -8.90416 -8.19827 -6.33512 -0.17234 0.39423 0.82024 1.09538 1.39991 1.41788 1.48109 1.54022 1.66689 2.39559 2.85519 3.11007 3.41547 3.70402 3.91026 3.94907 4.17766 4.24205 4.46197 4.51310 4.58048 4.71302 4.98881 5.12736 5.29515 5.34313 5.37747 5.42504 5.68322 5.74635 5.96853 6.08352 6.19006 6.41791 6.79579 7.35448 8.88612 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.043654 B = 0.003538 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.255708 B = 7912.535782 C = 8027.515467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.055 3.945 10 C -0.061 4.061 11 C -0.109 4.109 12 C -0.115 4.115 13 C 0.119 3.881 14 N -0.317 5.317 15 C 0.071 3.929 16 C -0.188 4.188 17 Cl -0.026 7.026 18 C 0.072 3.928 19 N -0.312 5.312 20 C -0.120 4.120 21 C -0.102 4.102 22 H 0.265 0.735 23 H 0.012 0.988 24 H 0.007 0.993 25 H 0.126 0.874 26 H 0.136 0.864 27 H 0.213 0.787 28 H 0.225 0.775 29 H 0.161 0.839 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.324 -16.823 -3.156 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.018 3.982 10 C -0.061 4.061 11 C -0.127 4.127 12 C -0.134 4.134 13 C 0.028 3.972 14 N -0.092 5.092 15 C -0.073 4.073 16 C -0.226 4.226 17 Cl 0.002 6.998 18 C -0.115 4.115 19 N -0.131 5.131 20 C -0.140 4.140 21 C -0.120 4.120 22 H 0.074 0.926 23 H 0.030 0.970 24 H 0.025 0.975 25 H 0.144 0.856 26 H 0.154 0.846 27 H 0.230 0.770 28 H 0.241 0.759 29 H 0.179 0.821 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.703 -16.155 -2.229 20.073 hybrid contribution 0.396 0.561 -0.567 0.891 sum 12.099 -15.594 -2.796 19.934 Atomic orbital electron populations 1.70072 1.07575 1.27890 1.51279 1.25871 0.95715 1.02955 0.94641 0.85430 0.78930 0.78999 0.77897 1.19041 1.20150 1.20406 1.21403 0.93129 0.91147 1.50920 0.92646 1.18137 0.92844 0.90734 0.96495 1.20547 0.96805 0.95128 0.93650 1.21000 0.97474 0.95826 0.98422 1.20815 0.98360 0.97091 0.97170 1.17507 0.94324 0.89676 0.95671 1.45749 1.33687 1.25158 1.04606 1.22952 0.95639 0.93838 0.94888 1.20825 1.07384 1.02364 0.92037 1.98335 1.72030 1.62158 1.67295 1.24551 0.96689 0.96471 0.93746 1.77526 1.15472 1.11354 1.08743 1.20955 0.98996 0.97585 0.96505 1.21022 0.97130 0.95613 0.98284 0.92558 0.96976 0.97510 0.85565 0.84585 0.77008 0.75909 0.82113 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.96 43.23 29.54 68.60 2.03 45.25 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.53 -28.99 9.09 25.60 0.23 -28.76 16 8 H 0.06 3.01 7.74 -2.91 -0.02 2.98 16 9 C 0.05 2.78 5.10 29.10 0.15 2.93 16 10 C -0.06 -2.50 5.07 -19.85 -0.10 -2.60 16 11 C -0.11 -4.07 9.69 22.25 0.22 -3.85 16 12 C -0.11 -3.80 9.66 22.39 0.22 -3.58 16 13 C 0.12 3.62 6.69 38.10 0.25 3.87 16 14 N -0.32 -8.60 3.82 -187.25 -0.72 -9.32 16 15 C 0.07 1.49 10.80 83.41 0.90 2.39 16 16 C -0.19 -3.72 6.65 22.03 0.15 -3.58 16 17 Cl -0.03 -0.43 29.30 -2.72 -0.08 -0.51 16 18 C 0.07 1.49 12.01 85.26 1.02 2.51 16 19 N -0.31 -8.49 11.87 -56.94 -0.68 -9.16 16 20 C -0.12 -3.36 9.46 22.39 0.21 -3.15 16 21 C -0.10 -3.50 9.69 22.25 0.22 -3.28 16 22 H 0.27 14.59 8.31 -92.71 -0.77 13.81 16 23 H 0.01 0.64 8.08 -2.39 -0.02 0.62 16 24 H 0.01 0.36 8.08 -2.39 -0.02 0.34 16 25 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 26 H 0.14 4.24 7.70 -2.91 -0.02 4.22 16 27 H 0.21 3.00 7.06 -2.91 -0.02 2.98 16 28 H 0.22 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.16 3.14 6.75 -2.91 -0.02 3.12 16 30 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -63.72 286.43 5.93 -57.80 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.16 Total: 6.30 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 3.93 Total: -36.26 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.11 Total: -72.58 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -63.72 5.93 -57.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260291334.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.985 kcal (2) G-P(sol) polarization free energy of solvation -63.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds