Wall clock time and date at job start Mon Mar 30 2020 06:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99933 * 2 1 4 4 H 1.48501 * 109.46932 * 264.65365 * 3 2 1 5 5 H 1.48492 * 109.47205 * 24.65622 * 3 2 1 6 6 H 1.48506 * 109.47343 * 144.65859 * 3 2 1 7 7 C 1.37879 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99843 * 4.75216 * 7 2 1 9 9 C 1.50702 * 120.00128 * 184.75518 * 7 2 1 10 10 H 1.08998 * 109.46827 * 354.83514 * 9 7 2 11 11 C 1.50698 * 109.47331 * 114.83590 * 9 7 2 12 12 C 1.38266 * 120.42445 * 59.99601 * 11 9 7 13 13 C 1.37697 * 120.96460 * 180.29729 * 12 11 9 14 14 C 1.40071 * 121.01225 * 0.02562 * 13 12 11 15 15 C 1.39904 * 116.92156 * 359.37879 * 14 13 12 16 16 C 1.37776 * 122.05572 * 0.92419 * 15 14 13 17 17 S 1.77707 * 105.47219 * 181.41017 * 15 14 13 18 18 C 1.83769 * 94.16651 * 13.17916 * 17 15 14 19 19 O 1.35845 * 126.40364 * 178.50604 * 14 13 12 20 20 C 1.53001 * 109.47222 * 234.83710 * 9 7 2 21 21 C 1.52992 * 117.50239 * 133.79561 * 20 9 7 22 22 C 1.52998 * 117.50231 * 65.16881 * 20 9 7 23 23 H 0.96999 * 119.99991 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.51468 * 0.28069 * 12 11 9 25 25 H 1.07994 * 119.49142 * 180.02562 * 13 12 11 26 26 H 1.07998 * 120.05912 * 179.36626 * 16 15 14 27 27 H 1.08996 * 111.20724 * 94.49268 * 18 17 15 28 28 H 1.09006 * 111.20523 * 218.86236 * 18 17 15 29 29 H 1.09002 * 115.54403 * 279.50687 * 20 9 7 30 30 H 1.09002 * 117.49761 * 0.02562 * 21 20 9 31 31 H 1.08995 * 117.50171 * 145.01968 * 21 20 9 32 32 H 1.08992 * 117.50616 * 214.98586 * 22 20 9 33 33 H 1.09005 * 117.49825 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6095 1.9812 -1.3940 5 1 1.3947 2.6826 0.5840 6 1 3.4857 1.4755 0.8099 7 6 2.0045 -1.1941 -0.0005 8 1 1.4673 -2.1277 -0.0784 9 6 3.5077 -1.1964 0.1077 10 1 3.8751 -0.1705 0.0844 11 6 3.9171 -1.8474 1.4036 12 6 3.5663 -3.1580 1.6702 13 6 3.9293 -3.7619 2.8533 14 6 4.6641 -3.0671 3.8225 15 6 5.0176 -1.7468 3.5235 16 6 4.6492 -1.1408 2.3423 17 16 5.9609 -1.1810 4.9192 18 6 6.1769 -2.8637 5.6254 19 8 5.0542 -3.5434 5.0334 20 6 4.1023 -1.9777 -1.0657 21 6 5.2807 -1.3468 -1.8100 22 6 3.9017 -1.4049 -2.4701 23 1 -0.4850 0.8400 -0.0004 24 1 2.9992 -3.7161 0.9400 25 1 3.6430 -4.7869 3.0367 26 1 4.9311 -0.1163 2.1491 27 1 7.1197 -3.3075 5.3057 28 1 6.0996 -2.8480 6.7126 29 1 4.0965 -3.0625 -0.9592 30 1 5.6327 -0.3751 -1.4634 31 1 6.0506 -2.0164 -2.1931 32 1 3.7643 -2.1126 -3.2876 33 1 3.3457 -0.4714 -2.5583 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260322829.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:09 Heat of formation + Delta-G solvation = 25.074975 kcal Electronic energy + Delta-G solvation = -17179.062813 eV Core-core repulsion = 14490.415110 eV Total energy + Delta-G solvation = -2688.647703 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.00130 -38.03516 -36.28284 -32.86354 -31.07078 -30.59425 -27.97467 -26.87069 -23.53347 -22.66042 -21.62657 -21.39270 -19.22758 -18.16971 -17.20054 -16.41463 -16.13295 -15.77181 -15.14523 -14.60182 -13.92892 -13.69561 -13.56442 -13.12656 -12.79937 -12.62257 -12.41118 -11.83106 -11.74779 -11.24217 -10.91132 -10.85169 -10.73971 -10.48345 -10.27567 -9.83794 -9.72342 -9.38619 -9.29576 -8.89466 -8.61007 -7.96307 -7.18721 -6.18879 -4.17697 1.25393 1.64464 1.77079 2.11266 3.08450 3.20259 3.27051 3.30402 4.11647 4.30815 4.61788 4.75689 4.88949 4.96481 5.14673 5.40462 5.56981 5.68148 5.74864 5.81674 5.86960 6.02839 6.14966 6.20114 6.33332 6.48149 6.58069 6.69349 6.80638 6.88184 6.95861 7.10854 7.32046 7.46474 7.58957 8.38793 8.85983 9.42200 10.93698 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.021374 B = 0.006746 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.708037 B = 4149.775993 C = 4469.569175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.868 3.132 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.496 4.496 8 H 0.080 0.920 9 C 0.070 3.930 10 H 0.050 0.950 11 C -0.027 4.027 12 C -0.075 4.075 13 C -0.114 4.114 14 C 0.056 3.944 15 C -0.129 4.129 16 C -0.069 4.069 17 S -0.194 6.194 18 C 0.104 3.896 19 O -0.303 6.303 20 C -0.117 4.117 21 C -0.205 4.205 22 C -0.167 4.167 23 H 0.266 0.734 24 H 0.136 0.864 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.096 0.904 28 H 0.133 0.867 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.830 -4.980 5.198 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.696 3.304 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.534 4.534 8 H 0.098 0.902 9 C 0.051 3.949 10 H 0.069 0.931 11 C -0.029 4.029 12 C -0.094 4.094 13 C -0.134 4.134 14 C 0.006 3.994 15 C -0.242 4.242 16 C -0.092 4.092 17 S 0.043 5.957 18 C -0.081 4.081 19 O -0.218 6.218 20 C -0.136 4.136 21 C -0.242 4.242 22 C -0.204 4.204 23 H 0.076 0.924 24 H 0.153 0.847 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.114 0.886 28 H 0.151 0.849 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.018 -3.850 5.813 13.894 hybrid contribution 0.055 0.079 -0.261 0.279 sum 12.073 -3.771 5.552 13.813 Atomic orbital electron populations 1.69873 1.06195 1.27159 1.49552 1.25048 0.94697 0.98718 0.94206 0.87001 0.80281 0.84164 0.78957 1.19791 1.21348 1.18979 1.20764 0.87647 0.94899 1.50049 0.90242 1.18031 0.96852 0.94303 0.85744 0.93147 1.20603 0.91469 0.93154 0.97704 1.20739 0.97922 0.95221 0.95543 1.20393 1.01551 0.99775 0.91688 1.19712 1.01716 0.92074 0.85854 1.22054 1.08379 0.95040 0.98697 1.20102 0.98640 0.99856 0.90609 1.86547 1.68830 1.13739 1.26556 1.25935 0.91406 0.88959 1.01820 1.86222 1.46671 1.58232 1.30682 1.22465 0.98690 0.98581 0.93841 1.23038 0.91871 1.02246 1.07089 1.22719 0.98091 1.03318 0.96284 0.92411 0.84666 0.85707 0.85844 0.88630 0.84881 0.89035 0.89849 0.90115 0.89965 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 20.67 27.24 -169.99 -4.63 16.04 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.03 6.39 56.52 0.36 -5.67 16 7 C -0.50 -12.81 8.28 -34.44 -0.29 -13.09 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 9 C 0.07 1.52 2.05 -92.92 -0.19 1.33 16 10 H 0.05 1.13 4.08 -51.93 -0.21 0.92 16 11 C -0.03 -0.54 4.77 -104.54 -0.50 -1.04 16 12 C -0.07 -1.38 8.65 -39.77 -0.34 -1.73 16 13 C -0.11 -1.95 10.04 -39.09 -0.39 -2.34 16 14 C 0.06 0.98 6.86 -38.27 -0.26 0.72 16 15 C -0.13 -2.40 6.62 -39.13 -0.26 -2.65 16 16 C -0.07 -1.37 9.68 -39.68 -0.38 -1.75 16 17 S -0.19 -3.02 23.38 -107.50 -2.51 -5.53 16 18 C 0.10 1.24 8.65 101.05 0.87 2.12 16 19 O -0.30 -4.75 10.69 -19.25 -0.21 -4.96 16 20 C -0.12 -2.22 4.94 -90.62 -0.45 -2.67 16 21 C -0.21 -3.43 10.18 -26.74 -0.27 -3.70 16 22 C -0.17 -3.04 10.01 -26.73 -0.27 -3.30 16 23 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.14 2.38 7.80 -52.49 -0.41 1.97 16 25 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 26 H 0.12 2.40 7.97 -52.49 -0.42 1.98 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.63 7.43 -51.93 -0.39 1.24 16 30 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 292.56 15.07 4.41 4.41 Total: -1.00 -29.00 292.56 -8.97 -37.98 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.98 Total: 3.50 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -2.83 Total: -26.13 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.77 Total: -25.30 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.21 Total: -4.96 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.63 Total: 16.04 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.51 Total: -5.53 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.00 -8.97 -37.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260322829.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.053 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds