Wall clock time and date at job start Mon Mar 30 2020 06:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31063 * 1 3 3 Si 1.86807 * 119.99507 * 2 1 4 4 H 1.48489 * 109.46907 * 239.99655 * 3 2 1 5 5 H 1.48503 * 109.47098 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47033 * 119.99732 * 3 2 1 7 7 C 1.39663 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00476 * 180.02562 * 7 2 1 9 9 C 1.41521 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.41878 * 126.57269 * 359.96434 * 9 7 2 11 11 N 1.30295 * 108.07739 * 180.02562 * 10 9 7 12 12 N 1.39873 * 109.29110 * 0.02562 * 11 10 9 13 13 C 1.46503 * 125.67602 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46722 * 90.02270 * 13 12 11 15 15 C 1.38238 * 119.99727 * 90.00230 * 14 13 12 16 16 C 1.38234 * 119.99693 * 180.02562 * 15 14 13 17 17 C 1.38234 * 120.00240 * 359.97438 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.26327 * 17 16 15 19 19 C 1.38234 * 120.00207 * 270.01721 * 14 13 12 20 20 C 1.34586 * 108.64363 * 0.23700 * 12 11 10 21 21 Cl 1.73605 * 126.43075 * 179.76100 * 20 12 11 22 22 H 0.96994 * 120.00664 * 0.02562 * 1 2 3 23 23 H 1.08003 * 125.95847 * 0.03209 * 10 9 7 24 24 H 1.09000 * 109.47286 * 330.02749 * 13 12 11 25 25 H 1.08993 * 109.47262 * 210.02087 * 13 12 11 26 26 H 1.07997 * 119.99846 * 359.97438 * 15 14 13 27 27 H 1.07999 * 119.99751 * 179.97438 * 16 15 14 28 28 H 1.08002 * 119.99744 * 179.97438 * 17 16 15 29 29 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 30 30 H 1.07999 * 120.00008 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2445 1.6179 0.0000 4 1 3.0982 1.6965 -1.2124 5 1 1.2794 2.7465 -0.0006 6 1 3.0982 1.6966 1.2125 7 6 2.0090 -1.2095 0.0005 8 1 3.0891 -1.2095 0.0010 9 6 1.3015 -2.4351 0.0005 10 6 -0.1079 -2.5976 0.0007 11 7 -0.3677 -3.8744 0.0012 12 7 0.8339 -4.5905 0.0019 13 6 0.9586 -6.0502 0.0032 14 6 1.0021 -6.5517 -1.4173 15 6 2.2149 -6.6798 -2.0682 16 6 2.2547 -7.1394 -3.3713 17 6 1.0819 -7.4713 -4.0234 18 6 -0.1312 -7.3385 -3.3741 19 6 -0.1708 -6.8834 -2.0695 20 6 1.8563 -3.7152 0.0072 21 17 3.5478 -4.1059 0.0159 22 1 -0.4851 0.8399 -0.0004 23 1 -0.8381 -1.8018 0.0004 24 1 0.1025 -6.4876 0.5168 25 1 1.8760 -6.3360 0.5176 26 1 3.1311 -6.4201 -1.5589 27 1 3.2022 -7.2391 -3.8800 28 1 1.1131 -7.8300 -5.0416 29 1 -1.0479 -7.5937 -3.8850 30 1 -1.1183 -6.7826 -1.5612 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260356179.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:29 Heat of formation + Delta-G solvation = 85.756033 kcal Electronic energy + Delta-G solvation = -16644.991976 eV Core-core repulsion = 13853.391552 eV Total energy + Delta-G solvation = -2791.600424 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.59209 -38.67065 -35.42058 -34.02402 -32.81711 -30.69486 -29.72518 -28.94881 -26.01811 -24.26172 -22.37863 -21.30751 -19.73834 -19.30033 -17.33875 -16.57786 -15.42556 -15.16180 -14.91939 -14.72727 -13.85164 -13.34434 -13.23457 -12.94030 -12.47496 -12.32509 -12.13759 -11.56387 -11.22635 -11.15305 -11.02121 -10.82440 -10.72510 -10.62456 -10.32981 -9.90170 -9.31775 -8.95873 -8.70540 -8.61034 -7.82717 -7.27491 -6.55655 -4.09693 1.48346 1.61774 2.93854 3.04251 3.16454 3.20668 3.27217 3.84393 4.07374 4.25626 4.34112 4.99656 5.02540 5.16707 5.31631 5.39572 5.46234 5.66753 5.81158 5.87094 6.16316 6.23477 6.61106 6.63914 6.67408 6.85965 7.12705 7.18754 7.20176 7.49784 7.96600 8.25299 8.53649 8.82633 9.04304 9.28524 10.43262 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.026724 B = 0.005931 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.496676 B = 4719.882822 C = 5003.423916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.069 3.931 3 Si 0.918 3.082 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.427 4.427 8 H 0.075 0.925 9 C 0.012 3.988 10 C 0.036 3.964 11 N -0.311 5.311 12 N -0.384 5.384 13 C 0.185 3.815 14 C -0.099 4.099 15 C -0.097 4.097 16 C -0.126 4.126 17 C -0.122 4.122 18 C -0.127 4.127 19 C -0.094 4.094 20 C -0.048 4.048 21 Cl -0.066 7.066 22 H 0.277 0.723 23 H 0.209 0.791 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 -10.119 -3.499 10.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.143 4.143 3 Si 0.744 3.256 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.460 4.460 8 H 0.094 0.906 9 C 0.002 3.998 10 C -0.152 4.152 11 N -0.133 5.133 12 N -0.175 5.175 13 C 0.062 3.938 14 C -0.101 4.101 15 C -0.116 4.116 16 C -0.144 4.144 17 C -0.140 4.140 18 C -0.145 4.145 19 C -0.113 4.113 20 C -0.193 4.193 21 Cl -0.038 7.038 22 H 0.088 0.912 23 H 0.225 0.775 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.947 -10.942 -3.470 11.518 hybrid contribution 1.298 1.315 -0.132 1.852 sum 2.245 -9.627 -3.602 10.521 Atomic orbital electron populations 1.69430 1.07211 1.28512 1.41471 1.25691 0.94812 1.00882 0.92927 0.86197 0.79621 0.80210 0.79570 1.19335 1.20573 1.19293 1.18773 0.94126 0.88671 1.44465 0.90646 1.17792 0.91626 0.89936 1.00490 1.25017 0.97401 0.92041 1.00692 1.76690 1.03729 1.07065 1.25844 1.47353 1.02780 1.03150 1.64229 1.20094 1.02994 0.78136 0.92584 1.20297 0.93532 0.98901 0.97362 1.21124 0.97673 0.97867 0.94909 1.21087 0.98164 1.00191 0.94963 1.21100 0.92791 1.00554 0.99543 1.21092 0.97720 1.00720 0.94986 1.21072 0.97863 0.97555 0.94765 1.21168 0.79538 0.90423 1.28182 1.98201 1.13162 1.94425 1.98039 0.91178 0.77526 0.89382 0.89742 0.86071 0.86325 0.86479 0.86324 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.40 10.32 55.53 0.57 -20.82 16 2 C 0.07 1.74 5.49 -17.35 -0.10 1.65 16 3 Si 0.92 19.35 29.56 -169.99 -5.02 14.32 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.43 -11.46 9.25 -37.80 -0.35 -11.81 16 8 H 0.08 1.98 7.79 -52.48 -0.41 1.57 16 9 C 0.01 0.33 5.94 -106.78 -0.63 -0.30 16 10 C 0.04 0.96 10.91 -16.81 -0.18 0.77 16 11 N -0.31 -7.67 12.46 30.96 0.39 -7.28 16 12 N -0.38 -8.68 3.57 -58.35 -0.21 -8.88 16 13 C 0.19 3.28 6.38 -5.19 -0.03 3.25 16 14 C -0.10 -1.67 5.46 -104.62 -0.57 -2.24 16 15 C -0.10 -1.54 9.70 -39.58 -0.38 -1.92 16 16 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 17 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 18 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 19 C -0.09 -1.47 9.70 -39.58 -0.38 -1.85 16 20 C -0.05 -1.16 7.59 -15.87 -0.12 -1.28 16 21 Cl -0.07 -1.35 27.99 -51.86 -1.45 -2.80 16 22 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 23 H 0.21 5.49 5.77 -52.48 -0.30 5.19 16 24 H 0.09 1.41 8.09 -51.93 -0.42 0.99 16 25 H 0.08 1.37 7.72 -51.93 -0.40 0.97 16 26 H 0.12 1.89 7.52 -52.49 -0.39 1.49 16 27 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 283.19 15.07 4.27 4.27 Total: -1.00 -28.37 283.19 -8.16 -36.53 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -2.75 Total: 4.71 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -3.95 Total: -20.04 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.75 Total: -36.99 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.32 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -1.45 Total: -2.80 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.37 -8.16 -36.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356179.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.284 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds