Wall clock time and date at job start Mon Mar 30 2020 06:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31063 * 1 3 3 Si 1.86807 * 119.99507 * 2 1 4 4 H 1.48489 * 109.46907 * 239.99655 * 3 2 1 5 5 H 1.48503 * 109.47098 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47033 * 119.99732 * 3 2 1 7 7 C 1.39663 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00476 * 180.02562 * 7 2 1 9 9 C 1.41521 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.41878 * 126.57269 * 359.96434 * 9 7 2 11 11 N 1.30295 * 108.07739 * 180.02562 * 10 9 7 12 12 N 1.39873 * 109.29110 * 0.02562 * 11 10 9 13 13 C 1.46503 * 125.67602 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46722 * 90.02270 * 13 12 11 15 15 C 1.38238 * 119.99727 * 90.00230 * 14 13 12 16 16 C 1.38234 * 119.99693 * 180.02562 * 15 14 13 17 17 C 1.38234 * 120.00240 * 359.97438 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.26327 * 17 16 15 19 19 C 1.38234 * 120.00207 * 270.01721 * 14 13 12 20 20 C 1.34586 * 108.64363 * 0.23700 * 12 11 10 21 21 Cl 1.73605 * 126.43075 * 179.76100 * 20 12 11 22 22 H 0.96994 * 120.00664 * 0.02562 * 1 2 3 23 23 H 1.08003 * 125.95847 * 0.03209 * 10 9 7 24 24 H 1.09000 * 109.47286 * 330.02749 * 13 12 11 25 25 H 1.08993 * 109.47262 * 210.02087 * 13 12 11 26 26 H 1.07997 * 119.99846 * 359.97438 * 15 14 13 27 27 H 1.07999 * 119.99751 * 179.97438 * 16 15 14 28 28 H 1.08002 * 119.99744 * 179.97438 * 17 16 15 29 29 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 30 30 H 1.07999 * 120.00008 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2445 1.6179 0.0000 4 1 3.0982 1.6965 -1.2124 5 1 1.2794 2.7465 -0.0006 6 1 3.0982 1.6966 1.2125 7 6 2.0090 -1.2095 0.0005 8 1 3.0891 -1.2095 0.0010 9 6 1.3015 -2.4351 0.0005 10 6 -0.1079 -2.5976 0.0007 11 7 -0.3677 -3.8744 0.0012 12 7 0.8339 -4.5905 0.0019 13 6 0.9586 -6.0502 0.0032 14 6 1.0021 -6.5517 -1.4173 15 6 2.2149 -6.6798 -2.0682 16 6 2.2547 -7.1394 -3.3713 17 6 1.0819 -7.4713 -4.0234 18 6 -0.1312 -7.3385 -3.3741 19 6 -0.1708 -6.8834 -2.0695 20 6 1.8563 -3.7152 0.0072 21 17 3.5478 -4.1059 0.0159 22 1 -0.4851 0.8399 -0.0004 23 1 -0.8381 -1.8018 0.0004 24 1 0.1025 -6.4876 0.5168 25 1 1.8760 -6.3360 0.5176 26 1 3.1311 -6.4201 -1.5589 27 1 3.2022 -7.2391 -3.8800 28 1 1.1131 -7.8300 -5.0416 29 1 -1.0479 -7.5937 -3.8850 30 1 -1.1183 -6.7826 -1.5612 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260356179.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:29 Heat of formation + Delta-G solvation = 71.503654 kcal Electronic energy + Delta-G solvation = -16645.610005 eV Core-core repulsion = 13853.391552 eV Total energy + Delta-G solvation = -2792.218454 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.32837 -39.95405 -37.21693 -35.77118 -34.39527 -31.81333 -31.24793 -30.87796 -27.64283 -26.02587 -23.51865 -22.61439 -21.63657 -21.05743 -19.17899 -17.78830 -17.21038 -16.60071 -16.39368 -16.04916 -15.36050 -15.06793 -14.70054 -14.32808 -13.96481 -13.86394 -13.51329 -13.10025 -12.89635 -12.87001 -12.68059 -12.55256 -12.15044 -12.04106 -11.86562 -11.64856 -11.15939 -10.89175 -9.83317 -9.82222 -9.62786 -9.20577 -8.42431 -6.06429 0.29952 0.48890 1.13287 1.20224 1.46317 1.53682 1.57275 2.31492 2.32427 2.36590 2.98855 3.47733 3.73817 3.78860 4.12320 4.14403 4.26316 4.42587 4.64063 4.64965 4.79827 5.04276 5.12760 5.16074 5.26455 5.53207 5.57781 5.58947 5.66470 6.00394 6.08855 6.43140 6.55950 6.89172 7.09473 7.35509 8.57797 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.026724 B = 0.005931 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.496676 B = 4719.882822 C = 5003.423916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.028 3.972 3 Si 0.986 3.014 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.460 4.460 8 H 0.071 0.929 9 C -0.029 4.029 10 C 0.010 3.990 11 N -0.317 5.317 12 N -0.372 5.372 13 C 0.176 3.824 14 C -0.120 4.120 15 C -0.113 4.113 16 C -0.130 4.130 17 C -0.117 4.117 18 C -0.130 4.130 19 C -0.110 4.110 20 C -0.042 4.042 21 Cl -0.034 7.034 22 H 0.283 0.717 23 H 0.198 0.802 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.144 0.856 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 -10.966 -4.671 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.189 1.189 7 C -0.493 4.493 8 H 0.090 0.910 9 C -0.040 4.040 10 C -0.176 4.176 11 N -0.141 5.141 12 N -0.163 5.163 13 C 0.055 3.945 14 C -0.122 4.122 15 C -0.132 4.132 16 C -0.148 4.148 17 C -0.135 4.135 18 C -0.148 4.148 19 C -0.129 4.129 20 C -0.190 4.190 21 Cl -0.006 7.006 22 H 0.094 0.906 23 H 0.214 0.786 24 H 0.121 0.879 25 H 0.117 0.883 26 H 0.137 0.863 27 H 0.161 0.839 28 H 0.168 0.832 29 H 0.163 0.837 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.818 -11.822 -4.640 12.829 hybrid contribution 1.066 1.346 0.183 1.727 sum 2.884 -10.476 -4.457 11.744 Atomic orbital electron populations 1.69505 1.08327 1.29581 1.41563 1.26499 0.95658 1.03822 0.92195 0.85178 0.78394 0.76116 0.79501 1.19074 1.19459 1.18912 1.18953 0.94062 0.89716 1.46587 0.91049 1.18169 0.92219 0.91227 1.02338 1.24850 0.97378 0.92487 1.02854 1.76600 1.04742 1.06623 1.26106 1.47774 1.01817 1.04853 1.61830 1.20478 1.04390 0.75308 0.94345 1.20197 0.94531 1.00715 0.96733 1.21247 0.97216 0.98701 0.96006 1.21441 0.99821 0.99279 0.94277 1.21535 0.92062 0.99012 1.00883 1.21450 0.99323 0.99717 0.94263 1.21233 0.97505 0.98228 0.95888 1.21433 0.81417 0.90377 1.25802 1.98202 1.10412 1.94160 1.97869 0.90596 0.78555 0.87934 0.88318 0.86329 0.83861 0.83151 0.83750 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.95 10.32 21.79 0.22 -44.72 16 2 C 0.03 1.41 5.49 85.15 0.47 1.88 16 3 Si 0.99 39.69 29.56 68.60 2.03 41.72 16 4 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.46 -25.17 9.25 23.42 0.22 -24.96 16 8 H 0.07 3.81 7.79 -2.91 -0.02 3.79 16 9 C -0.03 -1.58 5.94 -21.26 -0.13 -1.71 16 10 C 0.01 0.56 10.91 85.82 0.94 1.50 16 11 N -0.32 -15.88 12.46 -55.95 -0.70 -16.58 16 12 N -0.37 -16.80 3.57 -338.52 -1.21 -18.01 16 13 C 0.18 6.11 6.38 85.63 0.55 6.66 16 14 C -0.12 -3.91 5.46 -19.86 -0.11 -4.02 16 15 C -0.11 -3.41 9.70 22.27 0.22 -3.20 16 16 C -0.13 -3.29 10.05 22.27 0.22 -3.06 16 17 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 18 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16 19 C -0.11 -3.30 9.70 22.27 0.22 -3.08 16 20 C -0.04 -2.07 7.59 84.58 0.64 -1.42 16 21 Cl -0.03 -1.37 27.99 -2.72 -0.08 -1.44 16 22 H 0.28 13.55 8.30 -92.71 -0.77 12.78 16 23 H 0.20 10.93 5.77 -2.91 -0.02 10.92 16 24 H 0.10 3.22 8.09 -2.39 -0.02 3.20 16 25 H 0.10 3.11 7.72 -2.39 -0.02 3.09 16 26 H 0.12 3.54 7.52 -2.91 -0.02 3.52 16 27 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 28 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 29 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.12 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -61.31 283.19 5.11 -56.20 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 1.16 Total: 19.71 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 3.68 Total: -36.89 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -1.68 Total: -79.31 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.44 kcal Total: -61.31 5.11 -56.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356179.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.708 kcal (2) G-P(sol) polarization free energy of solvation -61.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds