Wall clock time and date at job start Mon Mar 30 2020 06:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00547 * 2 1 4 4 H 1.48497 * 109.46959 * 240.00268 * 3 2 1 5 5 H 1.48498 * 109.46539 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47271 * 119.99775 * 3 2 1 7 7 C 1.37882 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00063 * 0.02562 * 7 2 1 10 10 F 1.39903 * 109.47227 * 299.99540 * 9 7 2 11 11 C 1.52997 * 109.47061 * 179.97438 * 9 7 2 12 12 C 1.50706 * 109.47198 * 184.99727 * 11 9 7 13 13 C 1.38238 * 119.99775 * 90.00136 * 12 11 9 14 14 C 1.38235 * 119.99712 * 179.97438 * 13 12 11 15 15 C 1.38234 * 120.00220 * 359.97124 * 14 13 12 16 16 C 1.38233 * 120.00037 * 0.28719 * 15 14 13 17 17 C 1.38233 * 120.00212 * 270.02182 * 12 11 9 18 18 C 1.52999 * 109.47374 * 59.99719 * 9 7 2 19 19 F 1.39901 * 109.47398 * 180.02562 * 18 9 7 20 20 F 1.39903 * 109.47330 * 300.00496 * 18 9 7 21 21 F 1.39907 * 109.46807 * 59.99987 * 18 9 7 22 22 H 0.97001 * 119.99348 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47286 * 65.00077 * 11 9 7 24 24 H 1.09002 * 109.47284 * 304.99500 * 11 9 7 25 25 H 1.08005 * 120.00068 * 359.97438 * 13 12 11 26 26 H 1.07999 * 119.99770 * 179.97438 * 14 13 12 27 27 H 1.08002 * 119.99744 * 180.02562 * 15 14 13 28 28 H 1.07998 * 120.00395 * 179.72811 * 16 15 14 29 29 H 1.07999 * 119.99956 * 0.02562 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 9 0.4462 -2.5731 1.1426 11 6 2.2451 -3.6621 0.0005 12 6 1.4956 -4.9637 -0.1232 13 6 1.2312 -5.4929 -1.3726 14 6 0.5442 -6.6871 -1.4861 15 6 0.1222 -7.3524 -0.3503 16 6 0.3819 -6.8205 0.8989 17 6 1.0722 -5.6283 1.0125 18 6 0.3717 -2.5805 -1.2490 19 9 -0.3283 -3.7918 -1.2487 20 9 -0.5374 -1.5170 -1.2496 21 9 1.1765 -2.5066 -2.3910 22 1 -0.4849 0.8401 -0.0004 23 1 2.8113 -3.6561 0.9319 24 1 2.9292 -3.5553 -0.8413 25 1 1.5614 -4.9733 -2.2601 26 1 0.3373 -7.1003 -2.4623 27 1 -0.4142 -8.2856 -0.4391 28 1 0.0484 -7.3380 1.7862 29 1 1.2781 -5.2144 1.9886 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260379536.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:40 Heat of formation + Delta-G solvation = -167.820386 kcal Electronic energy + Delta-G solvation = -21140.946249 eV Core-core repulsion = 17335.864060 eV Total energy + Delta-G solvation = -3805.082190 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.63623 -48.39923 -47.96207 -47.62433 -39.97647 -35.75558 -34.17734 -31.69644 -30.97269 -27.19666 -26.54306 -23.41947 -23.16124 -21.67701 -19.54198 -18.89983 -18.76664 -18.01733 -17.52698 -16.83083 -16.07351 -15.87676 -15.64046 -15.27513 -15.03690 -14.81625 -14.58318 -14.48251 -14.44944 -14.15485 -14.00994 -13.81038 -13.54739 -13.19510 -12.88045 -12.75999 -12.67011 -12.34924 -12.00839 -11.78341 -11.49209 -10.97412 -10.74488 -9.67097 -9.39041 -8.23247 -6.63651 0.52451 0.61640 1.42739 1.45255 1.53754 2.29837 2.33182 2.87821 2.94509 3.37475 3.67391 3.78783 3.92851 3.99561 4.23409 4.25595 4.34255 4.48371 4.71025 4.80144 4.91138 5.15942 5.21969 5.28948 5.52741 5.56300 5.66271 5.68361 5.82219 6.22410 6.45190 7.15509 8.66455 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.036657 B = 0.008107 C = 0.007689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.647447 B = 3452.817293 C = 3640.586541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.022 3.978 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.594 4.594 8 H 0.091 0.909 9 C 0.214 3.786 10 F -0.219 7.219 11 C -0.091 4.091 12 C -0.104 4.104 13 C -0.109 4.109 14 C -0.133 4.133 15 C -0.124 4.124 16 C -0.130 4.130 17 C -0.121 4.121 18 C 0.415 3.585 19 F -0.200 7.200 20 F -0.154 7.154 21 F -0.194 7.194 22 H 0.268 0.732 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.141 0.859 27 H 0.149 0.851 28 H 0.144 0.856 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.213 -9.690 -1.220 10.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.185 4.185 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.630 4.630 8 H 0.109 0.891 9 C 0.194 3.806 10 F -0.199 7.199 11 C -0.128 4.128 12 C -0.104 4.104 13 C -0.127 4.127 14 C -0.151 4.151 15 C -0.142 4.142 16 C -0.148 4.148 17 C -0.140 4.140 18 C 0.359 3.641 19 F -0.181 7.181 20 F -0.135 7.135 21 F -0.175 7.175 22 H 0.078 0.922 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.129 0.871 26 H 0.158 0.842 27 H 0.167 0.833 28 H 0.162 0.838 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.974 -9.572 -1.214 9.849 hybrid contribution -0.143 1.097 -0.230 1.130 sum 1.831 -8.475 -1.444 8.790 Atomic orbital electron populations 1.70550 1.07484 1.28107 1.43391 1.26084 0.95893 1.03972 0.92555 0.85295 0.78225 0.76841 0.79548 1.18846 1.20697 1.18587 1.21536 0.94737 0.89016 1.57677 0.89100 1.19451 0.85364 0.98115 0.77672 1.92789 1.76730 1.97644 1.52767 1.21137 0.96960 0.89571 1.05177 1.19974 0.99977 0.95953 0.94480 1.21167 0.98841 0.96324 0.96385 1.21328 0.98775 0.95027 0.99961 1.21436 0.99866 1.00796 0.92064 1.21388 0.98839 0.95720 0.98857 1.21179 0.98962 0.95959 0.97853 1.22714 0.80863 0.72929 0.87551 1.93135 1.81489 1.46693 1.96813 1.93391 1.69031 1.54742 1.96318 1.92996 1.74099 1.96172 1.54268 0.92231 0.88579 0.88798 0.87053 0.84161 0.83279 0.83795 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.04 9.17 21.45 0.20 -48.85 15 2 C 0.02 1.16 5.16 84.66 0.44 1.60 15 3 Si 0.98 41.57 29.54 68.60 2.03 43.60 15 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 15 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 15 7 C -0.59 -31.18 8.04 25.60 0.21 -30.97 15 8 H 0.09 4.47 7.74 -2.91 -0.02 4.45 15 9 C 0.21 10.67 0.65 -11.54 -0.01 10.66 15 10 F -0.22 -11.95 16.00 44.97 0.72 -11.23 15 11 C -0.09 -3.70 4.49 29.85 0.13 -3.57 15 12 C -0.10 -3.90 3.75 -19.86 -0.07 -3.97 15 13 C -0.11 -3.81 6.54 22.27 0.15 -3.66 15 14 C -0.13 -3.88 10.05 22.27 0.22 -3.65 15 15 C -0.12 -3.26 10.05 22.27 0.22 -3.04 15 16 C -0.13 -3.70 10.05 22.27 0.22 -3.48 15 17 C -0.12 -4.17 9.55 22.27 0.21 -3.96 15 18 C 0.41 20.97 2.13 71.98 0.15 21.13 15 19 F -0.20 -9.44 12.59 44.97 0.57 -8.88 15 20 F -0.15 -8.73 12.89 44.97 0.58 -8.15 15 21 F -0.19 -9.26 15.91 44.97 0.72 -8.55 15 22 H 0.27 14.45 8.31 -92.71 -0.77 13.68 15 23 H 0.10 3.66 8.09 -2.39 -0.02 3.64 15 24 H 0.09 3.61 7.89 -2.39 -0.02 3.59 15 25 H 0.11 3.91 7.35 -2.91 -0.02 3.89 15 26 H 0.14 3.27 8.06 -2.91 -0.02 3.25 15 27 H 0.15 2.83 8.06 -2.91 -0.02 2.81 15 28 H 0.14 3.18 8.06 -2.91 -0.02 3.15 15 29 H 0.12 3.97 8.06 -2.91 -0.02 3.95 15 Total: -1.00 -61.53 259.47 7.86 -53.68 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 1.17 Total: 11.30 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 1.88 Total: -22.91 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.20 Total: -48.85 kcal Atomic # 9 Polarization: -39.39 SS G_CDS: 2.58 Total: -36.80 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -61.53 7.86 -53.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260379536.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.145 kcal (2) G-P(sol) polarization free energy of solvation -61.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds