Wall clock time and date at job start Mon Mar 30 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99844 * 2 1 4 4 H 1.48492 * 109.47444 * 240.00281 * 3 2 1 5 5 H 1.48503 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46657 * 119.99960 * 3 2 1 7 7 C 1.37877 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 F 1.39905 * 109.46943 * 60.00174 * 9 7 2 11 11 C 1.52997 * 109.47078 * 180.02562 * 9 7 2 12 12 C 1.50699 * 109.47078 * 180.02562 * 11 9 7 13 13 C 1.38237 * 120.00053 * 269.72717 * 12 11 9 14 14 C 1.38242 * 119.99668 * 179.76642 * 13 12 11 15 15 C 1.38234 * 120.00109 * 0.50765 * 14 13 12 16 16 C 1.38232 * 120.00005 * 359.74656 * 15 14 13 17 17 C 1.38233 * 119.99928 * 0.02562 * 16 15 14 18 18 C 1.52997 * 109.47265 * 300.00276 * 9 7 2 19 19 F 1.39900 * 109.47435 * 180.02562 * 18 9 7 20 20 F 1.39905 * 109.47057 * 299.99828 * 18 9 7 21 21 F 1.39898 * 109.47062 * 60.00029 * 18 9 7 22 22 H 0.96999 * 120.00366 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00035 * 11 9 7 24 24 H 1.09002 * 109.47153 * 60.00207 * 11 9 7 25 25 H 1.07999 * 119.99929 * 359.97438 * 13 12 11 26 26 H 1.08006 * 119.99420 * 180.23381 * 14 13 12 27 27 H 1.07997 * 119.99772 * 179.72837 * 15 14 13 28 28 H 1.08002 * 119.99819 * 179.97438 * 16 15 14 29 29 H 1.08003 * 119.99863 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 9 0.4464 -2.5730 -1.1426 11 6 2.2454 -3.6620 -0.0005 12 6 1.4920 -4.9671 -0.0012 13 6 1.1509 -5.5689 1.1957 14 6 0.4555 -6.7637 1.1950 15 6 0.1104 -7.3620 -0.0024 16 6 0.4561 -6.7628 -1.1992 17 6 1.1473 -5.5657 -1.1986 18 6 0.3719 -2.5805 1.2490 19 9 -0.3271 -3.7924 1.2493 20 9 1.1767 -2.5067 2.3910 21 9 -0.5372 -1.5172 1.2495 22 1 -0.4850 0.8400 0.0004 23 1 2.8721 -3.6043 -0.8905 24 1 2.8721 -3.6043 0.8895 25 1 1.4248 -5.1040 2.1312 26 1 0.1858 -7.2320 2.1302 27 1 -0.4290 -8.2976 -0.0028 28 1 0.1868 -7.2304 -2.1348 29 1 1.4177 -5.0978 -2.1337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260379542.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:42 Heat of formation + Delta-G solvation = -154.721042 kcal Electronic energy + Delta-G solvation = -21104.557383 eV Core-core repulsion = 17300.043224 eV Total energy + Delta-G solvation = -3804.514159 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.66445 -46.42738 -45.96658 -45.57971 -38.68369 -33.95443 -32.43777 -30.43643 -29.34378 -25.48438 -24.61014 -22.14718 -21.53037 -20.03992 -17.59721 -16.97208 -16.81571 -16.21547 -16.06101 -14.92494 -14.69836 -14.49749 -13.83355 -13.50082 -13.15086 -13.06124 -12.79637 -12.61288 -12.52972 -12.42688 -12.33744 -11.98355 -11.81525 -11.57942 -11.27999 -11.00188 -10.85721 -10.57694 -10.49805 -10.47654 -9.71575 -9.03593 -8.76378 -8.39089 -8.03822 -6.23186 -4.56990 1.81746 1.89339 3.20018 3.24281 3.26537 4.16127 4.24078 4.27664 4.87272 5.21470 5.28258 5.35689 5.41916 5.54025 5.61338 5.65486 5.87447 5.96041 6.06635 6.25566 6.36374 6.50615 6.62673 6.89056 6.92099 7.04298 7.23781 7.44952 7.52470 7.58497 8.46801 9.18235 10.66315 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.035893 B = 0.008113 C = 0.007627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.900538 B = 3450.447866 C = 3670.216815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.072 3.928 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.226 3.774 10 F -0.201 7.201 11 C -0.100 4.100 12 C -0.081 4.081 13 C -0.088 4.088 14 C -0.131 4.131 15 C -0.128 4.128 16 C -0.130 4.130 17 C -0.102 4.102 18 C 0.415 3.585 19 F -0.209 7.209 20 F -0.199 7.199 21 F -0.133 7.133 22 H 0.269 0.731 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -8.590 0.863 8.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.138 4.138 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.612 4.612 8 H 0.100 0.900 9 C 0.206 3.794 10 F -0.182 7.182 11 C -0.137 4.137 12 C -0.081 4.081 13 C -0.106 4.106 14 C -0.149 4.149 15 C -0.147 4.147 16 C -0.148 4.148 17 C -0.121 4.121 18 C 0.360 3.640 19 F -0.190 7.190 20 F -0.181 7.181 21 F -0.114 7.114 22 H 0.079 0.921 23 H 0.107 0.893 24 H 0.105 0.895 25 H 0.135 0.865 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.584 -8.456 0.855 8.645 hybrid contribution 0.005 0.863 0.241 0.896 sum 1.589 -7.593 1.096 7.834 Atomic orbital electron populations 1.70411 1.05970 1.27457 1.42183 1.25190 0.95128 1.00432 0.93098 0.86293 0.79451 0.81184 0.79092 1.19578 1.20825 1.19648 1.21113 0.94061 0.88081 1.57919 0.89959 1.19167 0.85024 0.96599 0.78606 1.92842 1.76046 1.97494 1.51800 1.21252 0.97793 0.90104 1.04597 1.20001 0.98701 0.96067 0.93374 1.21059 0.97382 0.94611 0.97568 1.20964 1.00031 0.96194 0.97693 1.20981 1.00971 0.99911 0.92793 1.21006 0.99903 0.96273 0.97651 1.21010 0.98355 0.95038 0.97649 1.22733 0.81002 0.73175 0.87134 1.93115 1.81642 1.47402 1.96870 1.93002 1.74322 1.96198 1.54542 1.93434 1.68276 1.53554 1.96178 0.92075 0.89264 0.89453 0.86538 0.86737 0.86893 0.86689 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.24 9.17 55.43 0.51 -22.73 15 2 C 0.07 1.92 5.16 -17.82 -0.09 1.83 15 3 Si 0.91 20.39 29.54 -169.99 -5.02 15.37 15 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 15 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 7 C -0.58 -15.10 8.04 -34.44 -0.28 -15.37 15 8 H 0.08 2.04 7.74 -52.49 -0.41 1.63 15 9 C 0.23 5.60 0.64 -91.78 -0.06 5.54 15 10 F -0.20 -5.42 15.79 2.25 0.04 -5.38 15 11 C -0.10 -2.03 4.52 -27.88 -0.13 -2.16 15 12 C -0.08 -1.55 3.91 -104.62 -0.41 -1.96 15 13 C -0.09 -1.58 6.57 -39.58 -0.26 -1.84 15 14 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 15 15 C -0.13 -1.91 10.05 -39.59 -0.40 -2.31 15 16 C -0.13 -2.02 10.05 -39.59 -0.40 -2.42 15 17 C -0.10 -1.81 9.42 -39.58 -0.37 -2.19 15 18 C 0.41 10.41 2.25 37.16 0.08 10.49 15 19 F -0.21 -4.93 12.56 2.25 0.03 -4.90 15 20 F -0.20 -4.75 16.30 2.25 0.04 -4.71 15 21 F -0.13 -3.72 12.89 2.25 0.03 -3.69 15 22 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 23 H 0.09 1.70 8.08 -51.93 -0.42 1.28 15 24 H 0.09 1.68 7.74 -51.93 -0.40 1.27 15 25 H 0.12 2.06 7.72 -52.49 -0.41 1.65 15 26 H 0.11 1.52 8.06 -52.48 -0.42 1.09 15 27 H 0.11 1.35 8.06 -52.49 -0.42 0.92 15 28 H 0.12 1.47 8.06 -52.49 -0.42 1.05 15 29 H 0.12 2.02 8.06 -52.48 -0.42 1.60 15 LS Contribution 260.06 15.07 3.92 3.92 Total: -1.00 -28.97 260.06 -5.63 -34.60 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -2.46 Total: 0.38 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -2.71 Total: -12.85 kcal Atomic # 7 Polarization: -23.24 SS G_CDS: 0.51 Total: -22.73 kcal Atomic # 9 Polarization: -18.81 SS G_CDS: 0.13 Total: -18.68 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.97 -5.63 -34.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260379542.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.126 kcal (2) G-P(sol) polarization free energy of solvation -28.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds