Wall clock time and date at job start Mon Mar 30 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99844 * 2 1 4 4 H 1.48492 * 109.47444 * 240.00281 * 3 2 1 5 5 H 1.48503 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46657 * 119.99960 * 3 2 1 7 7 C 1.37877 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 F 1.39905 * 109.46943 * 60.00174 * 9 7 2 11 11 C 1.52997 * 109.47078 * 180.02562 * 9 7 2 12 12 C 1.50699 * 109.47078 * 180.02562 * 11 9 7 13 13 C 1.38237 * 120.00053 * 269.72717 * 12 11 9 14 14 C 1.38242 * 119.99668 * 179.76642 * 13 12 11 15 15 C 1.38234 * 120.00109 * 0.50765 * 14 13 12 16 16 C 1.38232 * 120.00005 * 359.74656 * 15 14 13 17 17 C 1.38233 * 119.99928 * 0.02562 * 16 15 14 18 18 C 1.52997 * 109.47265 * 300.00276 * 9 7 2 19 19 F 1.39900 * 109.47435 * 180.02562 * 18 9 7 20 20 F 1.39905 * 109.47057 * 299.99828 * 18 9 7 21 21 F 1.39898 * 109.47062 * 60.00029 * 18 9 7 22 22 H 0.96999 * 120.00366 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00035 * 11 9 7 24 24 H 1.09002 * 109.47153 * 60.00207 * 11 9 7 25 25 H 1.07999 * 119.99929 * 359.97438 * 13 12 11 26 26 H 1.08006 * 119.99420 * 180.23381 * 14 13 12 27 27 H 1.07997 * 119.99772 * 179.72837 * 15 14 13 28 28 H 1.08002 * 119.99819 * 179.97438 * 16 15 14 29 29 H 1.08003 * 119.99863 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 9 0.4464 -2.5730 -1.1426 11 6 2.2454 -3.6620 -0.0005 12 6 1.4920 -4.9671 -0.0012 13 6 1.1509 -5.5689 1.1957 14 6 0.4555 -6.7637 1.1950 15 6 0.1104 -7.3620 -0.0024 16 6 0.4561 -6.7628 -1.1992 17 6 1.1473 -5.5657 -1.1986 18 6 0.3719 -2.5805 1.2490 19 9 -0.3271 -3.7924 1.2493 20 9 1.1767 -2.5067 2.3910 21 9 -0.5372 -1.5172 1.2495 22 1 -0.4850 0.8400 0.0004 23 1 2.8721 -3.6043 -0.8905 24 1 2.8721 -3.6043 0.8895 25 1 1.4248 -5.1040 2.1312 26 1 0.1858 -7.2320 2.1302 27 1 -0.4290 -8.2976 -0.0028 28 1 0.1868 -7.2304 -2.1348 29 1 1.4177 -5.0978 -2.1337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260379542.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:42 Heat of formation + Delta-G solvation = -169.093033 kcal Electronic energy + Delta-G solvation = -21105.180600 eV Core-core repulsion = 17300.043224 eV Total energy + Delta-G solvation = -3805.137376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.63777 -48.40101 -47.96678 -47.62431 -39.97619 -35.74980 -34.17241 -31.69650 -30.98989 -27.19733 -26.54327 -23.42219 -23.16361 -21.66134 -19.53910 -18.90168 -18.77976 -18.01635 -17.53602 -16.84112 -16.06677 -15.87380 -15.65133 -15.28579 -15.02024 -14.82497 -14.58918 -14.47807 -14.44236 -14.14055 -14.01446 -13.79442 -13.54829 -13.23240 -12.90759 -12.75401 -12.65032 -12.34873 -12.00638 -11.78437 -11.48417 -10.97500 -10.74390 -9.67077 -9.40926 -8.23207 -6.63636 0.52480 0.61566 1.42740 1.45237 1.53729 2.29406 2.32974 2.87896 2.94398 3.37479 3.67002 3.78605 3.92724 3.99661 4.23530 4.25096 4.34207 4.48677 4.71078 4.79748 4.90980 5.16506 5.21996 5.28685 5.52710 5.56362 5.66491 5.68269 5.82466 6.22255 6.45215 7.15538 8.66502 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.035893 B = 0.008113 C = 0.007627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.900538 B = 3450.447866 C = 3670.216815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.022 3.978 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.593 4.593 8 H 0.091 0.909 9 C 0.214 3.786 10 F -0.218 7.218 11 C -0.091 4.091 12 C -0.105 4.105 13 C -0.107 4.107 14 C -0.134 4.134 15 C -0.123 4.123 16 C -0.131 4.131 17 C -0.120 4.120 18 C 0.414 3.586 19 F -0.200 7.200 20 F -0.194 7.194 21 F -0.153 7.153 22 H 0.268 0.732 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.111 0.889 26 H 0.141 0.859 27 H 0.150 0.850 28 H 0.144 0.856 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 -9.715 0.812 9.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.185 4.185 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.630 4.630 8 H 0.109 0.891 9 C 0.194 3.806 10 F -0.199 7.199 11 C -0.128 4.128 12 C -0.105 4.105 13 C -0.125 4.125 14 C -0.152 4.152 15 C -0.141 4.141 16 C -0.149 4.149 17 C -0.138 4.138 18 C 0.359 3.641 19 F -0.182 7.182 20 F -0.176 7.176 21 F -0.134 7.134 22 H 0.078 0.922 23 H 0.114 0.886 24 H 0.111 0.889 25 H 0.129 0.871 26 H 0.159 0.841 27 H 0.167 0.833 28 H 0.162 0.838 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.965 -9.598 0.806 9.831 hybrid contribution -0.143 1.102 0.262 1.142 sum 1.821 -8.496 1.068 8.755 Atomic orbital electron populations 1.70548 1.07477 1.28115 1.43405 1.26082 0.95891 1.03967 0.92555 0.85296 0.78225 0.76847 0.79544 1.18590 1.20695 1.18852 1.21535 0.94736 0.89019 1.57667 0.89107 1.19437 0.85361 0.98103 0.77665 1.92791 1.76691 1.97641 1.52742 1.21132 0.96950 0.89568 1.05194 1.19961 1.00174 0.95906 0.94493 1.21152 0.98516 0.95856 0.96966 1.21338 0.98984 0.95372 0.99500 1.21441 0.99862 1.00830 0.91970 1.21391 0.98686 0.95357 0.99457 1.21184 0.99199 0.96209 0.97206 1.22747 0.80883 0.72947 0.87569 1.93126 1.81541 1.46641 1.96876 1.92999 1.74105 1.96190 1.54280 1.93392 1.69010 1.54709 1.96314 0.92228 0.88559 0.88899 0.87115 0.84137 0.83253 0.83777 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.04 9.17 21.45 0.20 -48.84 15 2 C 0.02 1.17 5.16 84.65 0.44 1.61 15 3 Si 0.98 41.57 29.54 68.60 2.03 43.60 15 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 15 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 15 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 15 7 C -0.59 -31.17 8.04 25.60 0.21 -30.97 15 8 H 0.09 4.47 7.74 -2.91 -0.02 4.45 15 9 C 0.21 10.69 0.64 -11.54 -0.01 10.68 15 10 F -0.22 -11.91 15.79 44.97 0.71 -11.20 15 11 C -0.09 -3.70 4.52 29.85 0.13 -3.57 15 12 C -0.11 -3.96 3.91 -19.87 -0.08 -4.03 15 13 C -0.11 -3.73 6.57 22.27 0.15 -3.58 15 14 C -0.13 -3.90 10.05 22.27 0.22 -3.68 15 15 C -0.12 -3.24 10.05 22.27 0.22 -3.01 15 16 C -0.13 -3.72 10.05 22.27 0.22 -3.50 15 17 C -0.12 -4.12 9.42 22.27 0.21 -3.91 15 18 C 0.41 20.93 2.25 71.98 0.16 21.10 15 19 F -0.20 -9.45 12.56 44.97 0.56 -8.88 15 20 F -0.19 -9.29 16.30 44.97 0.73 -8.56 15 21 F -0.15 -8.69 12.89 44.97 0.58 -8.11 15 22 H 0.27 14.45 8.31 -92.71 -0.77 13.68 15 23 H 0.10 3.67 8.08 -2.38 -0.02 3.65 15 24 H 0.09 3.57 7.74 -2.39 -0.02 3.55 15 25 H 0.11 3.87 7.72 -2.91 -0.02 3.85 15 26 H 0.14 3.27 8.06 -2.91 -0.02 3.24 15 27 H 0.15 2.82 8.06 -2.91 -0.02 2.80 15 28 H 0.14 3.17 8.06 -2.91 -0.02 3.15 15 29 H 0.12 3.98 8.06 -2.91 -0.02 3.95 15 Total: -1.00 -61.52 260.06 7.87 -53.65 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.17 Total: 11.21 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 1.88 Total: -22.86 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.20 Total: -48.84 kcal Atomic # 9 Polarization: -39.35 SS G_CDS: 2.59 Total: -36.76 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -61.52 7.87 -53.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260379542.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.439 kcal (2) G-P(sol) polarization free energy of solvation -61.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds