Wall clock time and date at job start Mon Mar 30 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86801 * 119.99871 * 2 1 4 4 H 1.48504 * 109.46904 * 269.99825 * 3 2 1 5 5 H 1.48495 * 109.47133 * 29.99903 * 3 2 1 6 6 H 1.48502 * 109.46703 * 150.00111 * 3 2 1 7 7 C 1.37870 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00524 * 0.02562 * 7 2 1 10 10 C 1.50692 * 109.47153 * 180.02562 * 9 7 2 11 11 C 1.36016 * 119.54034 * 99.99853 * 10 9 7 12 12 C 1.40548 * 119.73973 * 179.97438 * 11 10 9 13 13 C 1.40520 * 121.21992 * 179.97438 * 12 11 10 14 14 C 1.36201 * 119.67035 * 180.02562 * 13 12 11 15 15 Cl 1.73599 * 119.51687 * 180.02562 * 14 13 12 16 16 C 1.39488 * 120.96741 * 359.97125 * 14 13 12 17 17 C 1.36058 * 120.97295 * 0.28596 * 16 14 13 18 18 C 1.40594 * 119.67446 * 359.49331 * 17 16 14 19 19 C 1.40428 * 121.22317 * 180.22262 * 18 17 16 20 20 C 1.36601 * 119.62134 * 180.25034 * 19 18 17 21 21 O 1.35894 * 119.56607 * 180.02562 * 20 19 18 22 22 H 0.97000 * 119.99821 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46832 * 59.99353 * 9 7 2 24 24 H 1.09001 * 109.46749 * 299.99701 * 9 7 2 25 25 H 1.08006 * 120.12677 * 0.02562 * 11 10 9 26 26 H 1.08006 * 120.16376 * 0.02562 * 13 12 11 27 27 H 1.08002 * 119.51016 * 179.97438 * 16 14 13 28 28 H 1.08005 * 120.16365 * 179.74415 * 17 16 14 29 29 H 1.07996 * 120.19360 * 0.27212 * 19 18 17 30 30 H 0.96700 * 114.00717 * 89.99815 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6445 0.0018 11 6 2.5091 -4.2872 1.1677 12 6 3.4214 -5.3564 1.1736 13 6 3.7325 -6.0418 2.3602 14 6 4.6216 -7.0731 2.3297 15 17 5.0026 -7.9176 3.7979 16 6 5.2297 -7.4615 1.1359 17 6 4.9564 -6.8175 -0.0310 18 6 4.0401 -5.7512 -0.0394 19 6 3.7304 -5.0668 -1.2259 20 6 2.8392 -4.0321 -1.1956 21 8 2.5400 -3.3710 -2.3446 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.0306 -3.9777 2.0852 26 1 3.2689 -5.7522 3.2917 27 1 5.9316 -8.2824 1.1389 28 1 5.4378 -7.1265 -0.9471 29 1 4.1940 -5.3571 -2.1571 30 1 1.7920 -3.7448 -2.8302 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260402089.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:48 Heat of formation + Delta-G solvation = -21.104642 kcal Electronic energy + Delta-G solvation = -16394.466182 eV Core-core repulsion = 13565.939180 eV Total energy + Delta-G solvation = -2828.527002 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.27263 -37.99178 -36.48846 -34.96756 -33.19302 -32.30547 -30.65733 -28.38622 -27.11035 -23.76148 -22.76859 -21.84482 -21.16362 -18.31770 -16.98800 -16.36718 -16.29031 -15.65601 -14.67804 -14.53582 -14.22415 -13.93537 -13.55315 -13.31541 -12.80707 -12.43540 -12.06814 -11.94705 -11.64066 -11.33838 -11.14033 -10.87815 -10.79167 -10.57335 -10.30931 -10.17436 -9.68352 -9.50507 -9.37899 -8.43774 -7.90905 -7.55423 -6.05944 -4.08184 0.68627 1.16685 2.17241 2.25086 3.10410 3.31253 3.37073 3.42019 4.26440 4.45886 4.63162 4.78284 4.98257 5.20681 5.27890 5.30739 5.46082 5.50043 5.72108 5.87488 6.10339 6.15799 6.26368 6.39785 6.51599 6.81043 6.86502 6.92875 7.19300 7.45110 7.63594 7.89348 8.17395 8.28897 8.94550 9.54939 11.04316 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.027399 B = 0.004856 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.694491 B = 5764.625653 C = 6317.190691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.056 0.944 9 C 0.053 3.947 10 C -0.051 4.051 11 C -0.110 4.110 12 C -0.044 4.044 13 C -0.089 4.089 14 C -0.040 4.040 15 Cl -0.085 7.085 16 C -0.125 4.125 17 C -0.089 4.089 18 C -0.051 4.051 19 C -0.155 4.155 20 C 0.137 3.863 21 O -0.483 6.483 22 H 0.262 0.738 23 H 0.033 0.967 24 H 0.029 0.971 25 H 0.131 0.869 26 H 0.135 0.865 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 -14.710 0.986 16.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.540 4.540 8 H 0.074 0.926 9 C 0.016 3.984 10 C -0.051 4.051 11 C -0.128 4.128 12 C -0.044 4.044 13 C -0.108 4.108 14 C -0.067 4.067 15 Cl -0.057 7.057 16 C -0.144 4.144 17 C -0.107 4.107 18 C -0.051 4.051 19 C -0.173 4.173 20 C 0.093 3.907 21 O -0.292 6.292 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.149 0.851 26 H 0.152 0.848 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 7.362 -14.302 1.280 16.136 hybrid contribution 0.136 0.630 -0.039 0.646 sum 7.498 -13.672 1.240 15.642 Atomic orbital electron populations 1.69948 1.05988 1.26818 1.50831 1.24961 0.94877 0.99194 0.95190 0.86523 0.79807 0.83096 0.78217 1.20547 1.21196 1.19852 1.20935 0.92934 0.89543 1.50547 0.92608 1.18305 0.92279 0.89334 0.98435 1.20873 0.96670 0.95940 0.91656 1.20826 0.98329 0.95094 0.98599 1.17991 0.97749 0.96604 0.92081 1.20916 0.97084 0.94399 0.98411 1.20471 1.01404 0.97375 0.87412 1.98346 1.93779 1.77512 1.36042 1.20530 1.01373 1.01426 0.91049 1.20891 0.97022 0.95015 0.97743 1.17850 0.97705 0.96643 0.92928 1.21145 1.01689 0.96781 0.97731 1.18213 0.95353 0.90337 0.86842 1.84885 1.53969 1.56221 1.34154 0.92868 0.94938 0.95232 0.85123 0.84753 0.85517 0.85157 0.85392 0.75994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.50 -13.94 9.09 -34.44 -0.31 -14.25 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.05 1.32 4.73 -29.04 -0.14 1.18 16 10 C -0.05 -1.06 5.05 -104.84 -0.53 -1.59 16 11 C -0.11 -2.05 9.35 -39.51 -0.37 -2.42 16 12 C -0.04 -0.73 5.74 -106.81 -0.61 -1.34 16 13 C -0.09 -1.30 9.51 -39.45 -0.38 -1.67 16 14 C -0.04 -0.54 6.28 -39.85 -0.25 -0.79 16 15 Cl -0.09 -1.02 28.91 -51.86 -1.50 -2.52 16 16 C -0.13 -1.53 9.72 -39.90 -0.39 -1.92 16 17 C -0.09 -1.13 9.77 -39.48 -0.39 -1.51 16 18 C -0.05 -0.80 5.74 -106.83 -0.61 -1.41 16 19 C -0.15 -2.47 9.68 -39.35 -0.38 -2.85 16 20 C 0.14 2.58 6.61 -39.58 -0.26 2.32 16 21 O -0.48 -8.90 12.65 -19.41 -0.25 -9.15 16 22 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 23 H 0.03 0.84 7.82 -51.93 -0.41 0.43 16 24 H 0.03 0.76 7.95 -51.93 -0.41 0.35 16 25 H 0.13 2.30 7.99 -52.48 -0.42 1.88 16 26 H 0.13 1.75 8.06 -52.48 -0.42 1.32 16 27 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.38 5.13 9.06 45.56 0.41 5.55 16 LS Contribution 283.52 15.07 4.27 4.27 Total: -1.00 -30.60 283.52 -8.53 -39.13 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -2.06 Total: 1.68 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -4.71 Total: -24.70 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.74 Total: -25.39 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.25 Total: -9.15 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.60 -8.53 -39.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260402089.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.027 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds