Wall clock time and date at job start Mon Mar 30 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86801 * 119.99871 * 2 1 4 4 H 1.48504 * 109.46904 * 269.99825 * 3 2 1 5 5 H 1.48495 * 109.47133 * 29.99903 * 3 2 1 6 6 H 1.48502 * 109.46703 * 150.00111 * 3 2 1 7 7 C 1.37870 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00524 * 0.02562 * 7 2 1 10 10 C 1.50692 * 109.47153 * 180.02562 * 9 7 2 11 11 C 1.36016 * 119.54034 * 99.99853 * 10 9 7 12 12 C 1.40548 * 119.73973 * 179.97438 * 11 10 9 13 13 C 1.40520 * 121.21992 * 179.97438 * 12 11 10 14 14 C 1.36201 * 119.67035 * 180.02562 * 13 12 11 15 15 Cl 1.73599 * 119.51687 * 180.02562 * 14 13 12 16 16 C 1.39488 * 120.96741 * 359.97125 * 14 13 12 17 17 C 1.36058 * 120.97295 * 0.28596 * 16 14 13 18 18 C 1.40594 * 119.67446 * 359.49331 * 17 16 14 19 19 C 1.40428 * 121.22317 * 180.22262 * 18 17 16 20 20 C 1.36601 * 119.62134 * 180.25034 * 19 18 17 21 21 O 1.35894 * 119.56607 * 180.02562 * 20 19 18 22 22 H 0.97000 * 119.99821 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46832 * 59.99353 * 9 7 2 24 24 H 1.09001 * 109.46749 * 299.99701 * 9 7 2 25 25 H 1.08006 * 120.12677 * 0.02562 * 11 10 9 26 26 H 1.08006 * 120.16376 * 0.02562 * 13 12 11 27 27 H 1.08002 * 119.51016 * 179.97438 * 16 14 13 28 28 H 1.08005 * 120.16365 * 179.74415 * 17 16 14 29 29 H 1.07996 * 120.19360 * 0.27212 * 19 18 17 30 30 H 0.96700 * 114.00717 * 89.99815 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6445 0.0018 11 6 2.5091 -4.2872 1.1677 12 6 3.4214 -5.3564 1.1736 13 6 3.7325 -6.0418 2.3602 14 6 4.6216 -7.0731 2.3297 15 17 5.0026 -7.9176 3.7979 16 6 5.2297 -7.4615 1.1359 17 6 4.9564 -6.8175 -0.0310 18 6 4.0401 -5.7512 -0.0394 19 6 3.7304 -5.0668 -1.2259 20 6 2.8392 -4.0321 -1.1956 21 8 2.5400 -3.3710 -2.3446 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.0306 -3.9777 2.0852 26 1 3.2689 -5.7522 3.2917 27 1 5.9316 -8.2824 1.1389 28 1 5.4378 -7.1265 -0.9471 29 1 4.1940 -5.3571 -2.1571 30 1 1.7920 -3.7448 -2.8302 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260402089.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:47 Heat of formation + Delta-G solvation = -39.109028 kcal Electronic energy + Delta-G solvation = -16395.246911 eV Core-core repulsion = 13565.939180 eV Total energy + Delta-G solvation = -2829.307731 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.050 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.52094 -39.25073 -37.56168 -36.37139 -35.04890 -33.60993 -32.20908 -29.60539 -28.82704 -25.53321 -24.03701 -23.03735 -22.67635 -19.63821 -18.55276 -18.09103 -17.61705 -16.92298 -16.50945 -15.77078 -15.59606 -15.21100 -14.71950 -14.40430 -14.37058 -14.21524 -13.59682 -13.33748 -13.16044 -12.82676 -12.64585 -12.47351 -12.30800 -11.94974 -11.85094 -11.79110 -11.18680 -11.10872 -10.82607 -10.59860 -9.25768 -8.78774 -8.19920 -6.30772 -0.49533 -0.05807 1.02537 1.13407 1.38137 1.39172 1.49993 1.87913 2.40982 3.04317 3.11495 3.39223 3.65466 3.89517 4.05963 4.12338 4.26711 4.34584 4.38801 4.75174 4.89683 4.92033 5.05724 5.20744 5.27313 5.29330 5.34519 5.48841 5.72822 5.77481 5.86712 5.90281 6.17625 6.78419 6.96687 7.36197 8.89232 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.027399 B = 0.004856 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.694491 B = 5764.625653 C = 6317.190691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.516 4.516 8 H 0.044 0.956 9 C 0.064 3.936 10 C -0.084 4.084 11 C -0.114 4.114 12 C -0.057 4.057 13 C -0.104 4.104 14 C -0.035 4.035 15 Cl -0.070 7.070 16 C -0.117 4.117 17 C -0.081 4.081 18 C -0.061 4.061 19 C -0.135 4.135 20 C 0.112 3.888 21 O -0.501 6.501 22 H 0.265 0.735 23 H 0.012 0.988 24 H 0.005 0.995 25 H 0.125 0.875 26 H 0.141 0.859 27 H 0.160 0.840 28 H 0.168 0.832 29 H 0.161 0.839 30 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.549 -16.524 0.818 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.554 4.554 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.085 4.085 11 C -0.132 4.132 12 C -0.057 4.057 13 C -0.123 4.123 14 C -0.062 4.062 15 Cl -0.041 7.041 16 C -0.136 4.136 17 C -0.098 4.098 18 C -0.061 4.061 19 C -0.153 4.153 20 C 0.067 3.933 21 O -0.313 6.313 22 H 0.074 0.926 23 H 0.030 0.970 24 H 0.023 0.977 25 H 0.143 0.857 26 H 0.159 0.841 27 H 0.177 0.823 28 H 0.186 0.814 29 H 0.179 0.821 30 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 9.899 -16.132 1.113 18.960 hybrid contribution -0.578 0.990 0.108 1.152 sum 9.321 -15.142 1.221 17.822 Atomic orbital electron populations 1.70057 1.07382 1.27804 1.51693 1.25800 0.95741 1.02705 0.94789 0.85527 0.78597 0.78930 0.78495 1.19828 1.20256 1.19449 1.21208 0.92565 0.91298 1.50318 0.93742 1.17983 0.92618 0.90556 0.96100 1.20589 0.97877 0.96168 0.93833 1.20832 0.98904 0.95795 0.97711 1.18066 0.97687 0.96297 0.93643 1.20975 0.98108 0.95152 0.98082 1.20686 1.00326 0.96551 0.88622 1.98359 1.93515 1.76932 1.35275 1.20951 1.00857 1.01600 0.90150 1.21253 0.95702 0.93365 0.99519 1.18172 0.98209 0.97522 0.92229 1.21395 0.99727 0.94942 0.99212 1.18258 0.96960 0.92024 0.86027 1.84828 1.54951 1.57288 1.34251 0.92619 0.97022 0.97713 0.85677 0.84136 0.82260 0.81423 0.82135 0.74200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.52 -29.90 9.09 25.60 0.23 -29.67 16 8 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 9 C 0.06 3.40 4.73 29.10 0.14 3.54 16 10 C -0.08 -3.67 5.05 -20.00 -0.10 -3.77 16 11 C -0.11 -4.42 9.35 22.32 0.21 -4.21 16 12 C -0.06 -1.84 5.74 -21.28 -0.12 -1.96 16 13 C -0.10 -2.88 9.51 22.35 0.21 -2.67 16 14 C -0.04 -0.83 6.28 22.10 0.14 -0.69 16 15 Cl -0.07 -1.45 28.91 -2.72 -0.08 -1.53 16 16 C -0.12 -2.34 9.72 22.06 0.21 -2.12 16 17 C -0.08 -1.69 9.77 22.34 0.22 -1.47 16 18 C -0.06 -1.76 5.74 -21.30 -0.12 -1.88 16 19 C -0.13 -4.04 9.68 22.42 0.22 -3.83 16 20 C 0.11 4.25 6.61 22.27 0.15 4.40 16 21 O -0.50 -18.91 12.65 -92.36 -1.17 -20.08 16 22 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 23 H 0.01 0.64 7.82 -2.39 -0.02 0.62 16 24 H 0.00 0.26 7.95 -2.39 -0.02 0.24 16 25 H 0.13 4.73 7.99 -2.91 -0.02 4.71 16 26 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 27 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 28 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 29 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 30 H 0.40 11.12 9.06 -74.06 -0.67 10.45 16 Total: -1.00 -67.75 283.52 3.41 -64.34 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.50 Total: 9.08 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 1.84 Total: -43.43 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.28 Total: -55.62 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -1.17 Total: -20.08 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -67.75 3.41 -64.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260402089.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.230 kcal (2) G-P(sol) polarization free energy of solvation -67.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds