Wall clock time and date at job start Mon Mar 30 2020 06:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00104 * 2 1 4 4 H 1.48501 * 109.46994 * 239.99630 * 3 2 1 5 5 H 1.48495 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47090 * 119.99975 * 3 2 1 7 7 C 1.37881 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99401 * 173.39626 * 7 2 1 9 9 C 1.50696 * 120.00117 * 353.39342 * 7 2 1 10 10 C 1.50693 * 115.55108 * 82.91912 * 9 7 2 11 11 C 1.38973 * 119.68424 * 233.93409 * 10 9 7 12 12 C 1.36598 * 120.80959 * 179.97438 * 11 10 9 13 13 C 1.39285 * 119.85018 * 0.02562 * 12 11 10 14 14 N 1.37042 * 133.83653 * 179.97438 * 13 12 11 15 15 H 0.97001 * 125.44702 * 359.96805 * 14 13 12 16 16 N 1.39864 * 109.09800 * 180.22877 * 14 13 12 17 17 C 1.30299 * 110.08405 * 359.60627 * 16 14 13 18 18 Cl 1.73603 * 126.12529 * 180.16377 * 17 16 14 19 19 C 1.40812 * 119.41817 * 0.02562 * 13 12 11 20 20 C 1.36470 * 119.69186 * 53.95767 * 10 9 7 21 21 C 1.53007 * 117.49803 * 228.58670 * 9 7 2 22 22 C 1.53005 * 117.50074 * 297.24539 * 9 7 2 23 23 H 0.96998 * 119.99860 * 354.95250 * 1 2 3 24 24 H 1.07993 * 119.59674 * 359.97438 * 11 10 9 25 25 H 1.07997 * 120.07077 * 179.97438 * 12 11 10 26 26 H 1.07998 * 120.17552 * 0.02562 * 20 10 9 27 27 H 1.08994 * 117.49642 * 215.00459 * 21 9 7 28 28 H 1.09005 * 117.49906 * 0.02562 * 21 9 7 29 29 H 1.09000 * 117.49682 * 359.97438 * 22 9 7 30 30 H 1.08995 * 117.50339 * 144.99462 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0791 -1.1973 -0.1070 9 6 1.2584 -2.4948 0.1513 10 6 0.6575 -3.0498 -1.1143 11 6 -0.6954 -3.3652 -1.1531 12 6 -1.2640 -3.8692 -2.2883 13 6 -0.4831 -4.0720 -3.4236 14 7 -0.7434 -4.5485 -4.6819 15 1 -1.6084 -4.8488 -5.0020 16 7 0.4391 -4.5381 -5.4288 17 6 1.4198 -4.0736 -4.7076 18 17 3.0657 -3.8766 -5.2234 19 6 0.8881 -3.7540 -3.3858 20 6 1.4471 -3.2385 -2.2113 21 6 1.7850 -3.4959 1.1815 22 6 0.4926 -2.7229 1.4561 23 1 -0.4850 0.8368 0.0739 24 1 -1.3046 -3.2100 -0.2751 25 1 -2.3165 -4.1105 -2.3051 26 1 2.4978 -2.9917 -2.1729 27 1 1.6967 -4.5560 0.9439 28 1 2.6708 -3.2136 1.7506 29 1 0.5288 -1.9323 2.2056 30 1 -0.4459 -3.2743 1.3991 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260433893.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:52 Heat of formation + Delta-G solvation = 103.124782 kcal Electronic energy + Delta-G solvation = -16869.929713 eV Core-core repulsion = 14079.082455 eV Total energy + Delta-G solvation = -2790.847259 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.85069 -37.79818 -36.61716 -35.10254 -31.98197 -31.78938 -29.44563 -28.66845 -25.59666 -22.79294 -22.23774 -21.40573 -20.86952 -19.31310 -17.42151 -16.66658 -15.72678 -14.84894 -14.78367 -14.68328 -14.48445 -13.71826 -13.24908 -13.19224 -12.26151 -12.08225 -11.59571 -11.41535 -11.28337 -11.10356 -10.97503 -10.71073 -10.50888 -10.31470 -10.22149 -9.64962 -9.62470 -9.06417 -8.48424 -8.35942 -8.07524 -7.18514 -6.07638 -4.15110 1.37545 1.66327 2.14204 2.68767 3.24918 3.29898 3.34877 3.37520 4.36830 4.44155 4.88724 5.12196 5.19883 5.37123 5.51579 5.67481 5.90299 6.11980 6.18410 6.41418 6.42268 6.62629 6.68596 6.70574 6.79959 7.02859 7.28250 7.38265 7.41393 7.60857 7.69425 7.76772 7.84732 8.34781 8.85787 9.51430 11.00298 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.007166 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.818015 B = 3906.644037 C = 4493.272305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.076 3.924 3 Si 0.887 3.113 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.496 4.496 8 H 0.062 0.938 9 C 0.074 3.926 10 C -0.024 4.024 11 C -0.041 4.041 12 C -0.157 4.157 13 C 0.116 3.884 14 N -0.504 5.504 15 H 0.439 0.561 16 N -0.251 5.251 17 C 0.143 3.857 18 Cl 0.010 6.990 19 C -0.164 4.164 20 C -0.034 4.034 21 C -0.200 4.200 22 C -0.160 4.160 23 H 0.261 0.739 24 H 0.129 0.871 25 H 0.119 0.881 26 H 0.128 0.872 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 -7.722 -5.043 9.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.533 4.533 8 H 0.081 0.919 9 C 0.074 3.926 10 C -0.026 4.026 11 C -0.062 4.062 12 C -0.179 4.179 13 C 0.002 3.998 14 N -0.223 5.223 15 H 0.284 0.716 16 N -0.070 5.070 17 C -0.060 4.060 18 Cl 0.038 6.962 19 C -0.172 4.172 20 C -0.054 4.054 21 C -0.238 4.238 22 C -0.198 4.198 23 H 0.070 0.930 24 H 0.147 0.853 25 H 0.136 0.864 26 H 0.146 0.854 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.308 -8.021 -6.289 10.276 hybrid contribution 0.162 1.229 0.427 1.311 sum -1.146 -6.792 -5.862 9.045 Atomic orbital electron populations 1.70002 1.05815 1.26965 1.47780 1.24944 0.94798 0.98846 0.94259 0.86737 0.79781 0.83237 0.78795 1.20039 1.21312 1.20181 1.20344 0.92758 0.88351 1.51837 0.91948 1.17603 0.97640 0.93423 0.83975 1.19338 0.92280 0.94528 0.96455 1.20840 0.95367 0.93208 0.96770 1.19689 0.98728 1.08200 0.91282 1.18637 0.94502 0.99359 0.87266 1.45470 1.08420 1.60192 1.08229 0.71604 1.76335 0.91385 1.20139 1.19103 1.23687 0.88170 1.01974 0.92125 1.98379 1.11281 1.95664 1.90865 1.19444 0.92639 1.11133 0.94025 1.20096 1.00437 0.95462 0.89447 1.23034 0.98291 0.95670 1.06756 1.22642 0.92752 1.01422 1.02957 0.92957 0.85295 0.86350 0.85427 0.91451 0.90065 0.89896 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.46 13.03 55.43 0.72 -22.74 16 2 C 0.08 1.99 5.40 -17.82 -0.10 1.90 16 3 Si 0.89 20.50 29.55 -169.99 -5.02 15.48 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.50 -12.76 8.50 -34.44 -0.29 -13.06 16 8 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 9 C 0.07 1.71 1.57 -156.81 -0.25 1.46 16 10 C -0.02 -0.52 5.22 -104.99 -0.55 -1.07 16 11 C -0.04 -0.81 9.22 -39.90 -0.37 -1.18 16 12 C -0.16 -2.68 10.03 -39.78 -0.40 -3.08 16 13 C 0.12 2.04 7.33 -84.17 -0.62 1.43 16 14 N -0.50 -7.73 7.37 32.36 0.24 -7.50 16 15 H 0.44 5.00 8.96 -182.77 -1.64 3.36 16 16 N -0.25 -4.27 12.55 34.13 0.43 -3.84 16 17 C 0.14 2.54 8.09 -15.09 -0.12 2.41 16 18 Cl 0.01 0.16 29.33 -51.86 -1.52 -1.36 16 19 C -0.16 -3.17 6.37 -105.18 -0.67 -3.84 16 20 C -0.03 -0.71 9.42 -39.59 -0.37 -1.08 16 21 C -0.20 -4.08 9.94 -26.69 -0.27 -4.35 16 22 C -0.16 -3.46 9.12 -26.69 -0.24 -3.71 16 23 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 24 H 0.13 2.45 6.35 -52.49 -0.33 2.11 16 25 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 26 H 0.13 2.62 8.03 -52.49 -0.42 2.20 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 30 H 0.07 1.32 6.52 -51.93 -0.34 0.98 16 LS Contribution 281.84 15.07 4.25 4.25 Total: -1.00 -27.84 281.84 -9.12 -36.96 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -3.97 Total: 2.92 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -4.24 Total: -24.16 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 1.39 Total: -34.07 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: 0.16 SS G_CDS: -1.52 Total: -1.36 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.84 -9.12 -36.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433893.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.086 kcal (2) G-P(sol) polarization free energy of solvation -27.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds