Wall clock time and date at job start Mon Mar 30 2020 06:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00104 * 2 1 4 4 H 1.48501 * 109.46994 * 239.99630 * 3 2 1 5 5 H 1.48495 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47090 * 119.99975 * 3 2 1 7 7 C 1.37881 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99401 * 173.39626 * 7 2 1 9 9 C 1.50696 * 120.00117 * 353.39342 * 7 2 1 10 10 C 1.50693 * 115.55108 * 82.91912 * 9 7 2 11 11 C 1.38973 * 119.68424 * 233.93409 * 10 9 7 12 12 C 1.36598 * 120.80959 * 179.97438 * 11 10 9 13 13 C 1.39285 * 119.85018 * 0.02562 * 12 11 10 14 14 N 1.37042 * 133.83653 * 179.97438 * 13 12 11 15 15 H 0.97001 * 125.44702 * 359.96805 * 14 13 12 16 16 N 1.39864 * 109.09800 * 180.22877 * 14 13 12 17 17 C 1.30299 * 110.08405 * 359.60627 * 16 14 13 18 18 Cl 1.73603 * 126.12529 * 180.16377 * 17 16 14 19 19 C 1.40812 * 119.41817 * 0.02562 * 13 12 11 20 20 C 1.36470 * 119.69186 * 53.95767 * 10 9 7 21 21 C 1.53007 * 117.49803 * 228.58670 * 9 7 2 22 22 C 1.53005 * 117.50074 * 297.24539 * 9 7 2 23 23 H 0.96998 * 119.99860 * 354.95250 * 1 2 3 24 24 H 1.07993 * 119.59674 * 359.97438 * 11 10 9 25 25 H 1.07997 * 120.07077 * 179.97438 * 12 11 10 26 26 H 1.07998 * 120.17552 * 0.02562 * 20 10 9 27 27 H 1.08994 * 117.49642 * 215.00459 * 21 9 7 28 28 H 1.09005 * 117.49906 * 0.02562 * 21 9 7 29 29 H 1.09000 * 117.49682 * 359.97438 * 22 9 7 30 30 H 1.08995 * 117.50339 * 144.99462 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0791 -1.1973 -0.1070 9 6 1.2584 -2.4948 0.1513 10 6 0.6575 -3.0498 -1.1143 11 6 -0.6954 -3.3652 -1.1531 12 6 -1.2640 -3.8692 -2.2883 13 6 -0.4831 -4.0720 -3.4236 14 7 -0.7434 -4.5485 -4.6819 15 1 -1.6084 -4.8488 -5.0020 16 7 0.4391 -4.5381 -5.4288 17 6 1.4198 -4.0736 -4.7076 18 17 3.0657 -3.8766 -5.2234 19 6 0.8881 -3.7540 -3.3858 20 6 1.4471 -3.2385 -2.2113 21 6 1.7850 -3.4959 1.1815 22 6 0.4926 -2.7229 1.4561 23 1 -0.4850 0.8368 0.0739 24 1 -1.3046 -3.2100 -0.2751 25 1 -2.3165 -4.1105 -2.3051 26 1 2.4978 -2.9917 -2.1729 27 1 1.6967 -4.5560 0.9439 28 1 2.6708 -3.2136 1.7506 29 1 0.5288 -1.9323 2.2056 30 1 -0.4459 -3.2743 1.3991 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260433893.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:52 Heat of formation + Delta-G solvation = 88.679728 kcal Electronic energy + Delta-G solvation = -16870.556098 eV Core-core repulsion = 14079.082455 eV Total energy + Delta-G solvation = -2791.473643 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.23251 -39.36273 -37.88856 -36.66654 -33.93048 -33.17934 -30.85946 -30.12706 -27.52695 -24.25614 -23.78294 -22.81752 -22.46243 -20.97470 -18.80424 -18.41927 -17.22013 -16.59996 -16.23267 -16.13807 -16.10746 -15.19670 -14.96385 -14.60154 -13.93839 -13.40292 -13.10053 -13.05983 -12.86755 -12.83488 -12.63329 -12.33970 -12.24441 -11.88226 -11.68184 -11.35503 -11.08787 -10.73961 -10.39768 -10.06472 -9.52603 -8.66210 -8.04234 -6.15797 -0.04593 0.38734 0.66698 1.28801 1.44960 1.46456 1.52112 1.97643 2.46689 2.92545 3.24515 3.48717 3.64524 3.79247 4.10691 4.21820 4.44565 4.58721 4.68760 4.75935 4.83649 5.05750 5.15913 5.24088 5.25794 5.35391 5.69244 5.73010 5.79405 5.98270 6.10629 6.31202 6.47277 6.47779 6.88523 7.51810 9.01653 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.007166 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.818015 B = 3906.644037 C = 4493.272305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.035 3.965 3 Si 0.937 3.063 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.508 4.508 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.043 4.043 11 C -0.058 4.058 12 C -0.138 4.138 13 C 0.115 3.885 14 N -0.484 5.484 15 H 0.458 0.542 16 N -0.249 5.249 17 C 0.131 3.869 18 Cl 0.026 6.974 19 C -0.182 4.182 20 C -0.050 4.050 21 C -0.183 4.183 22 C -0.159 4.159 23 H 0.258 0.742 24 H 0.131 0.869 25 H 0.158 0.842 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.779 -8.582 -5.883 10.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.167 4.167 3 Si 0.763 3.237 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.070 0.930 9 C 0.049 3.951 10 C -0.044 4.044 11 C -0.078 4.078 12 C -0.160 4.160 13 C 0.000 4.000 14 N -0.206 5.206 15 H 0.307 0.693 16 N -0.068 5.068 17 C -0.072 4.072 18 Cl 0.054 6.946 19 C -0.190 4.190 20 C -0.070 4.070 21 C -0.220 4.220 22 C -0.196 4.196 23 H 0.067 0.933 24 H 0.149 0.851 25 H 0.176 0.824 26 H 0.134 0.866 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.132 -8.897 -7.142 11.606 hybrid contribution 0.435 1.433 0.626 1.623 sum -1.697 -7.463 -6.516 10.052 Atomic orbital electron populations 1.70085 1.06606 1.27180 1.49025 1.25508 0.95497 1.01226 0.94426 0.85953 0.78738 0.80336 0.78666 1.20161 1.21257 1.19740 1.20620 0.92618 0.90073 1.51211 0.92969 1.17664 0.98768 0.93378 0.85306 1.19274 0.93414 0.95850 0.95912 1.20896 0.94591 0.94346 0.97981 1.19988 1.00392 1.05803 0.89828 1.18761 0.94019 0.99051 0.88149 1.45495 1.08915 1.58983 1.07219 0.69301 1.76319 0.91685 1.19665 1.19138 1.23796 0.89200 1.02397 0.91761 1.98380 1.10024 1.95583 1.90607 1.19612 0.93802 1.11376 0.94206 1.20015 1.00047 0.96729 0.90208 1.23039 0.97582 0.96343 1.05062 1.22565 0.94122 1.01293 1.01641 0.93276 0.85096 0.82396 0.86554 0.89379 0.90137 0.92033 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.47 13.03 21.45 0.28 -48.19 16 2 C 0.04 1.86 5.40 84.66 0.46 2.31 16 3 Si 0.94 42.41 29.55 68.60 2.03 44.43 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.51 -26.53 8.50 25.60 0.22 -26.32 16 8 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 9 C 0.05 2.28 1.57 -53.67 -0.08 2.19 16 10 C -0.04 -1.83 5.22 -20.10 -0.10 -1.94 16 11 C -0.06 -2.17 9.22 22.06 0.20 -1.97 16 12 C -0.14 -4.34 10.03 22.14 0.22 -4.12 16 13 C 0.11 3.77 7.33 39.21 0.29 4.06 16 14 N -0.48 -13.40 7.37 -51.54 -0.38 -13.78 16 15 H 0.46 8.73 8.96 -213.47 -1.91 6.82 16 16 N -0.25 -7.89 12.55 -45.94 -0.58 -8.46 16 17 C 0.13 4.45 8.09 86.94 0.70 5.15 16 18 Cl 0.03 0.78 29.33 -2.72 -0.08 0.70 16 19 C -0.18 -6.81 6.37 -20.23 -0.13 -6.94 16 20 C -0.05 -2.06 9.42 22.26 0.21 -1.85 16 21 C -0.18 -7.36 9.94 30.62 0.30 -7.06 16 22 C -0.16 -6.83 9.12 30.62 0.28 -6.56 16 23 H 0.26 13.60 8.32 -92.71 -0.77 12.83 16 24 H 0.13 4.79 6.35 -2.91 -0.02 4.77 16 25 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 26 H 0.12 4.91 8.03 -2.91 -0.02 4.89 16 27 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.08 3.19 8.14 -2.38 -0.02 3.18 16 29 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.08 3.26 6.52 -2.39 -0.02 3.25 16 Total: -1.00 -58.59 281.84 3.11 -55.48 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -0.73 Total: 12.85 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 2.57 Total: -43.02 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -0.68 Total: -70.44 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 17 Polarization: 0.78 SS G_CDS: -0.08 Total: 0.70 kcal Total: -58.59 3.11 -55.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433893.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.161 kcal (2) G-P(sol) polarization free energy of solvation -58.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds