Wall clock time and date at job start Mon Mar 30 2020 06:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86793 * 120.00000 * 2 1 4 4 H 1.48499 * 109.47345 * 274.98223 * 3 2 1 5 5 H 1.48500 * 109.47005 * 34.98154 * 3 2 1 6 6 H 1.48501 * 109.47121 * 154.98073 * 3 2 1 7 7 C 1.39851 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99671 * 185.99902 * 7 2 1 9 9 C 1.41425 * 119.99991 * 5.99622 * 7 2 1 10 10 C 1.42210 * 126.55672 * 174.33729 * 9 7 2 11 11 C 1.35222 * 105.53151 * 179.70773 * 10 9 7 12 12 Cl 1.73595 * 126.32734 * 180.27787 * 11 10 9 13 13 N 1.35948 * 107.34550 * 0.41287 * 11 10 9 14 14 C 1.46498 * 124.86375 * 179.83880 * 13 11 10 15 15 C 1.50704 * 109.46989 * 269.71465 * 14 13 11 16 16 C 1.38233 * 119.99877 * 89.99630 * 15 14 13 17 17 C 1.38237 * 120.00211 * 180.27843 * 16 15 14 18 18 C 1.38236 * 119.99804 * 359.49269 * 17 16 15 19 19 C 1.38233 * 119.99786 * 0.51207 * 18 17 16 20 20 C 1.38232 * 120.00344 * 270.02586 * 15 14 13 21 21 N 1.28473 * 110.27594 * 359.56189 * 13 11 10 22 22 H 0.96994 * 119.99876 * 359.97438 * 1 2 3 23 23 H 1.08002 * 127.23227 * 359.94218 * 10 9 7 24 24 H 1.08997 * 109.47470 * 149.72129 * 14 13 11 25 25 H 1.09004 * 109.47246 * 29.71143 * 14 13 11 26 26 H 1.08002 * 120.00263 * 0.02562 * 16 15 14 27 27 H 1.08002 * 120.00496 * 179.72549 * 17 16 15 28 28 H 1.07996 * 120.00069 * 180.23085 * 18 17 16 29 29 H 1.08001 * 120.00255 * 179.72239 * 19 18 17 30 30 H 1.07999 * 119.99480 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3852 2.1072 -1.3948 5 1 1.4970 2.6199 0.8027 6 1 3.5892 1.4120 0.5921 7 6 2.0082 -1.2112 -0.0005 8 1 3.0838 -1.2137 0.0972 9 6 1.3069 -2.4325 -0.1290 10 6 1.8788 -3.7280 -0.2590 11 6 0.8315 -4.5792 -0.3445 12 17 0.9199 -6.3049 -0.5109 13 7 -0.3033 -3.8335 -0.2792 14 6 -1.6641 -4.3724 -0.3401 15 6 -2.1245 -4.4133 -1.7745 16 6 -1.8924 -5.5386 -2.5430 17 6 -2.3096 -5.5741 -3.8605 18 6 -2.9681 -4.4881 -4.4064 19 6 -3.2001 -3.3628 -3.6379 20 6 -2.7783 -3.3254 -2.3220 21 7 -0.0114 -2.5889 -0.1507 22 1 -0.4850 0.8400 0.0004 23 1 2.9289 -3.9796 -0.2805 24 1 -2.3334 -3.7354 0.2381 25 1 -1.6745 -5.3808 0.0737 26 1 -1.3815 -6.3887 -2.1154 27 1 -2.1243 -6.4516 -4.4623 28 1 -3.2973 -4.5172 -5.4345 29 1 -3.7107 -2.5126 -4.0656 30 1 -2.9596 -2.4462 -1.7215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260438876.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:31 Heat of formation + Delta-G solvation = 91.089242 kcal Electronic energy + Delta-G solvation = -16769.518768 eV Core-core repulsion = 13978.149609 eV Total energy + Delta-G solvation = -2791.369159 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.62391 -38.81856 -35.95385 -33.91436 -32.70336 -30.66073 -29.96478 -28.54984 -26.88864 -24.34080 -22.35367 -21.27945 -20.00525 -19.57441 -17.08303 -16.64561 -15.77611 -15.24142 -14.87288 -14.62180 -14.09632 -13.31176 -13.22941 -12.81871 -12.60982 -12.56189 -12.25778 -11.69212 -11.32336 -11.15196 -11.04833 -10.81065 -10.78248 -10.57567 -10.46134 -9.93897 -9.18143 -8.67208 -8.60632 -8.51003 -7.60121 -7.39863 -6.32367 -4.18912 1.49815 1.65628 2.64310 3.15153 3.20902 3.24512 3.28354 3.80355 4.18332 4.31370 4.36177 5.00212 5.02653 5.19081 5.32583 5.41406 5.63195 5.69104 5.85187 5.89526 6.18609 6.27759 6.58847 6.65654 6.72289 6.85902 6.88544 7.12055 7.22416 7.40936 7.64233 8.09779 8.59210 8.91386 9.20290 10.14096 10.65694 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.018793 B = 0.007183 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.571240 B = 3897.148754 C = 4989.045825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.074 3.926 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.447 4.447 8 H 0.081 0.919 9 C 0.197 3.803 10 C -0.264 4.264 11 C 0.043 3.957 12 Cl -0.067 7.067 13 N -0.317 5.317 14 C 0.174 3.826 15 C -0.102 4.102 16 C -0.101 4.101 17 C -0.129 4.129 18 C -0.119 4.119 19 C -0.126 4.126 20 C -0.083 4.083 21 N -0.306 5.306 22 H 0.268 0.732 23 H 0.132 0.868 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 -8.367 -4.475 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.145 4.145 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.049 3.951 10 C -0.296 4.296 11 C -0.108 4.108 12 Cl -0.039 7.039 13 N -0.103 5.103 14 C 0.051 3.949 15 C -0.103 4.103 16 C -0.119 4.119 17 C -0.147 4.147 18 C -0.138 4.138 19 C -0.144 4.144 20 C -0.101 4.101 21 N -0.139 5.139 22 H 0.079 0.921 23 H 0.150 0.850 24 H 0.117 0.883 25 H 0.104 0.896 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.972 -7.901 -4.411 11.424 hybrid contribution 1.216 0.108 -0.198 1.237 sum -5.756 -7.793 -4.609 10.729 Atomic orbital electron populations 1.69957 1.06802 1.27335 1.36694 1.25730 0.94767 1.00298 0.93672 0.86365 0.80353 0.81694 0.78542 1.20035 1.20688 1.18902 1.18518 0.93880 0.87928 1.48247 0.90122 1.19135 0.87904 0.91872 0.96162 1.21343 0.96760 0.93221 1.18308 1.22006 0.90415 0.82155 1.16257 1.98259 1.98059 1.10591 1.97032 1.45689 1.03102 1.04604 1.56898 1.20310 0.81686 0.99570 0.93291 1.20133 0.99010 0.94622 0.96560 1.21088 0.98721 0.97920 0.94198 1.21045 0.99672 0.98721 0.95290 1.21112 0.99318 0.93885 0.99450 1.21128 1.00901 0.98061 0.94336 1.21177 0.96023 0.97545 0.95366 1.74895 1.16568 0.92014 1.30419 0.92147 0.85000 0.88307 0.89567 0.86239 0.86378 0.86473 0.86208 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.72 12.00 55.54 0.67 -21.05 16 2 C 0.07 1.98 5.49 -17.35 -0.10 1.88 16 3 Si 0.90 19.88 29.56 -169.99 -5.03 14.85 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.45 -12.47 9.41 -37.77 -0.36 -12.83 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.20 5.51 6.78 -84.72 -0.57 4.93 16 10 C -0.26 -6.50 10.96 -39.13 -0.43 -6.93 16 11 C 0.04 0.95 7.45 -16.80 -0.13 0.83 16 12 Cl -0.07 -1.17 28.05 -51.86 -1.45 -2.63 16 13 N -0.32 -7.31 3.30 -59.15 -0.20 -7.50 16 14 C 0.17 3.17 6.25 -5.19 -0.03 3.14 16 15 C -0.10 -1.77 5.46 -104.62 -0.57 -2.34 16 16 C -0.10 -1.57 9.70 -39.58 -0.38 -1.95 16 17 C -0.13 -1.80 10.05 -39.58 -0.40 -2.19 16 18 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 19 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 20 C -0.08 -1.41 9.70 -39.58 -0.38 -1.80 16 21 N -0.31 -8.33 10.26 32.33 0.33 -8.00 16 22 H 0.27 6.88 8.30 -40.82 -0.34 6.54 16 23 H 0.13 2.97 8.06 -52.49 -0.42 2.54 16 24 H 0.10 1.75 8.09 -51.93 -0.42 1.33 16 25 H 0.09 1.36 7.66 -51.93 -0.40 0.96 16 26 H 0.12 1.74 7.41 -52.49 -0.39 1.36 16 27 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 285.43 15.07 4.30 4.30 Total: -1.00 -30.59 285.43 -8.39 -38.98 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -2.87 Total: 2.59 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -4.14 Total: -21.55 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.80 Total: -36.56 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.45 Total: -2.63 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.59 -8.39 -38.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260438876.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.071 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds