Wall clock time and date at job start Mon Mar 30 2020 06:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86793 * 120.00000 * 2 1 4 4 H 1.48499 * 109.47345 * 274.98223 * 3 2 1 5 5 H 1.48500 * 109.47005 * 34.98154 * 3 2 1 6 6 H 1.48501 * 109.47121 * 154.98073 * 3 2 1 7 7 C 1.39851 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99671 * 185.99902 * 7 2 1 9 9 C 1.41425 * 119.99991 * 5.99622 * 7 2 1 10 10 C 1.42210 * 126.55672 * 174.33729 * 9 7 2 11 11 C 1.35222 * 105.53151 * 179.70773 * 10 9 7 12 12 Cl 1.73595 * 126.32734 * 180.27787 * 11 10 9 13 13 N 1.35948 * 107.34550 * 0.41287 * 11 10 9 14 14 C 1.46498 * 124.86375 * 179.83880 * 13 11 10 15 15 C 1.50704 * 109.46989 * 269.71465 * 14 13 11 16 16 C 1.38233 * 119.99877 * 89.99630 * 15 14 13 17 17 C 1.38237 * 120.00211 * 180.27843 * 16 15 14 18 18 C 1.38236 * 119.99804 * 359.49269 * 17 16 15 19 19 C 1.38233 * 119.99786 * 0.51207 * 18 17 16 20 20 C 1.38232 * 120.00344 * 270.02586 * 15 14 13 21 21 N 1.28473 * 110.27594 * 359.56189 * 13 11 10 22 22 H 0.96994 * 119.99876 * 359.97438 * 1 2 3 23 23 H 1.08002 * 127.23227 * 359.94218 * 10 9 7 24 24 H 1.08997 * 109.47470 * 149.72129 * 14 13 11 25 25 H 1.09004 * 109.47246 * 29.71143 * 14 13 11 26 26 H 1.08002 * 120.00263 * 0.02562 * 16 15 14 27 27 H 1.08002 * 120.00496 * 179.72549 * 17 16 15 28 28 H 1.07996 * 120.00069 * 180.23085 * 18 17 16 29 29 H 1.08001 * 120.00255 * 179.72239 * 19 18 17 30 30 H 1.07999 * 119.99480 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3852 2.1072 -1.3948 5 1 1.4970 2.6199 0.8027 6 1 3.5892 1.4120 0.5921 7 6 2.0082 -1.2112 -0.0005 8 1 3.0838 -1.2137 0.0972 9 6 1.3069 -2.4325 -0.1290 10 6 1.8788 -3.7280 -0.2590 11 6 0.8315 -4.5792 -0.3445 12 17 0.9199 -6.3049 -0.5109 13 7 -0.3033 -3.8335 -0.2792 14 6 -1.6641 -4.3724 -0.3401 15 6 -2.1245 -4.4133 -1.7745 16 6 -1.8924 -5.5386 -2.5430 17 6 -2.3096 -5.5741 -3.8605 18 6 -2.9681 -4.4881 -4.4064 19 6 -3.2001 -3.3628 -3.6379 20 6 -2.7783 -3.3254 -2.3220 21 7 -0.0114 -2.5889 -0.1507 22 1 -0.4850 0.8400 0.0004 23 1 2.9289 -3.9796 -0.2805 24 1 -2.3334 -3.7354 0.2381 25 1 -1.6745 -5.3808 0.0737 26 1 -1.3815 -6.3887 -2.1154 27 1 -2.1243 -6.4516 -4.4623 28 1 -3.2973 -4.5172 -5.4345 29 1 -3.7107 -2.5126 -4.0656 30 1 -2.9596 -2.4462 -1.7215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260438876.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:30 Heat of formation + Delta-G solvation = 74.521914 kcal Electronic energy + Delta-G solvation = -16770.237182 eV Core-core repulsion = 13978.149609 eV Total energy + Delta-G solvation = -2792.087572 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.45346 -40.04340 -37.56790 -35.68717 -34.39022 -31.83404 -31.57459 -30.43710 -28.62790 -26.04828 -23.54945 -22.65301 -21.89493 -21.31452 -18.92336 -18.00896 -17.50636 -16.59213 -16.48804 -16.09014 -15.56098 -15.13627 -14.58188 -14.38538 -14.28206 -13.94753 -13.53049 -13.17241 -13.00476 -12.81357 -12.71977 -12.48274 -12.31178 -12.07167 -11.87706 -11.76253 -11.10175 -10.46367 -9.85194 -9.82423 -9.49635 -9.28093 -8.31011 -6.25652 0.27989 0.47225 0.92544 1.41030 1.42659 1.44775 1.58640 2.30351 2.34459 2.39423 2.98694 3.55842 3.67622 3.76052 4.10095 4.12019 4.24901 4.38839 4.61402 4.64433 4.80478 5.00343 5.03328 5.11526 5.21737 5.40463 5.50879 5.56326 5.63463 5.72989 6.06842 6.26689 6.59765 6.90218 7.16160 8.19699 8.68721 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.018793 B = 0.007183 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.571240 B = 3897.148754 C = 4989.045825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.026 3.974 3 Si 0.983 3.017 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.482 4.482 8 H 0.083 0.917 9 C 0.159 3.841 10 C -0.292 4.292 11 C 0.053 3.947 12 Cl -0.018 7.018 13 N -0.316 5.316 14 C 0.166 3.834 15 C -0.121 4.121 16 C -0.108 4.108 17 C -0.127 4.127 18 C -0.113 4.113 19 C -0.132 4.132 20 C -0.109 4.109 21 N -0.335 5.335 22 H 0.272 0.728 23 H 0.145 0.855 24 H 0.093 0.907 25 H 0.112 0.888 26 H 0.129 0.871 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.138 0.862 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.654 -9.562 -5.948 12.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.189 4.189 3 Si 0.805 3.195 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.521 4.521 8 H 0.101 0.899 9 C 0.011 3.989 10 C -0.324 4.324 11 C -0.100 4.100 12 Cl 0.010 6.990 13 N -0.102 5.102 14 C 0.046 3.954 15 C -0.122 4.122 16 C -0.127 4.127 17 C -0.145 4.145 18 C -0.131 4.131 19 C -0.150 4.150 20 C -0.127 4.127 21 N -0.169 5.169 22 H 0.082 0.918 23 H 0.163 0.837 24 H 0.112 0.888 25 H 0.130 0.870 26 H 0.147 0.853 27 H 0.169 0.831 28 H 0.171 0.829 29 H 0.156 0.844 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.037 -9.119 -5.882 12.933 hybrid contribution 1.132 0.266 0.203 1.180 sum -5.905 -8.853 -5.678 12.062 Atomic orbital electron populations 1.70076 1.08449 1.28481 1.37607 1.26649 0.95643 1.03863 0.92703 0.85180 0.79067 0.76582 0.78690 1.19506 1.19900 1.17990 1.18890 0.94320 0.89128 1.49771 0.89871 1.19580 0.88720 0.93366 0.97266 1.21505 0.98057 0.92668 1.20147 1.22077 0.89547 0.84553 1.13791 1.98267 1.97961 1.06052 1.96747 1.46021 1.04885 1.03837 1.55468 1.20624 0.79532 1.00440 0.94800 1.20059 1.00398 0.95724 0.96039 1.21262 0.98946 0.97457 0.95031 1.21478 0.98351 0.99911 0.94734 1.21545 0.97921 0.92822 1.00832 1.21408 1.00660 0.99503 0.93453 1.21190 0.97738 0.97157 0.96650 1.74779 1.16756 0.94410 1.30910 0.91799 0.83746 0.88842 0.86951 0.85311 0.83061 0.82923 0.84414 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.06 12.00 21.81 0.26 -46.80 16 2 C 0.03 1.43 5.49 85.22 0.47 1.90 16 3 Si 0.98 41.49 29.56 68.60 2.03 43.52 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.48 -27.84 9.41 23.45 0.22 -27.62 16 8 H 0.08 4.53 7.85 -2.91 -0.02 4.51 16 9 C 0.16 9.19 6.78 40.77 0.28 9.47 16 10 C -0.29 -14.62 10.96 22.56 0.25 -14.38 16 11 C 0.05 2.35 7.45 83.36 0.62 2.97 16 12 Cl -0.02 -0.59 28.05 -2.72 -0.08 -0.67 16 13 N -0.32 -14.78 3.30 -341.05 -1.13 -15.91 16 14 C 0.17 6.13 6.25 85.63 0.54 6.66 16 15 C -0.12 -4.16 5.46 -19.87 -0.11 -4.27 16 16 C -0.11 -3.16 9.70 22.27 0.22 -2.94 16 17 C -0.13 -3.10 10.05 22.27 0.22 -2.87 16 18 C -0.11 -2.71 10.05 22.27 0.22 -2.48 16 19 C -0.13 -3.76 10.05 22.27 0.22 -3.54 16 20 C -0.11 -3.78 9.70 22.27 0.22 -3.57 16 21 N -0.33 -18.89 10.26 -51.61 -0.53 -19.42 16 22 H 0.27 14.40 8.30 -92.71 -0.77 13.63 16 23 H 0.14 6.58 8.06 -2.91 -0.02 6.55 16 24 H 0.09 3.46 8.09 -2.39 -0.02 3.45 16 25 H 0.11 3.43 7.66 -2.38 -0.02 3.41 16 26 H 0.13 3.41 7.41 -2.91 -0.02 3.39 16 27 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 28 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 29 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.11 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -68.01 285.43 5.07 -62.93 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 1.15 Total: 17.01 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 3.36 Total: -40.67 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -1.39 Total: -82.13 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -68.01 5.07 -62.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260438876.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.456 kcal (2) G-P(sol) polarization free energy of solvation -68.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds