Wall clock time and date at job start Mon Mar 30 2020 06:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39897 * 109.46617 * 2 1 4 4 C 1.50703 * 109.46856 * 240.00193 * 2 1 3 5 5 C 1.38656 * 119.87715 * 345.02292 * 4 2 1 6 6 C 1.38615 * 120.49927 * 179.97438 * 5 4 2 7 7 C 1.37642 * 120.24642 * 359.97438 * 6 5 4 8 8 C 1.40692 * 119.74445 * 359.74993 * 7 6 5 9 9 C 1.41402 * 120.24310 * 180.27498 * 8 7 6 10 10 H 1.07996 * 119.99837 * 330.44128 * 9 8 7 11 11 C 1.39947 * 119.99878 * 150.43526 * 9 8 7 12 12 N 1.30825 * 119.99955 * 161.72664 * 11 9 8 13 13 Si 1.86805 * 120.00101 * 341.72321 * 11 9 8 14 14 H 1.48498 * 109.46722 * 95.41704 * 13 11 9 15 15 H 1.48501 * 109.47136 * 215.41810 * 13 11 9 16 16 H 1.48503 * 109.47111 * 335.41487 * 13 11 9 17 17 C 1.37597 * 119.87210 * 164.99821 * 4 2 1 18 18 C 1.53001 * 109.47051 * 120.00208 * 2 1 3 19 19 F 1.39895 * 109.46899 * 179.97438 * 18 2 1 20 20 F 1.39907 * 109.46890 * 299.99928 * 18 2 1 21 21 F 1.39896 * 109.46939 * 60.00061 * 18 2 1 22 22 H 1.09002 * 109.46917 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47063 * 299.99847 * 1 2 3 24 24 H 1.09004 * 109.47184 * 59.99894 * 1 2 3 25 25 H 1.07993 * 119.74779 * 359.95070 * 5 4 2 26 26 H 1.07995 * 119.87170 * 180.02562 * 6 5 4 27 27 H 1.07996 * 120.12198 * 180.02562 * 7 6 5 28 28 H 0.96996 * 120.00020 * 179.97438 * 12 11 9 29 29 H 1.07999 * 120.12797 * 359.97438 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.1675 -1.4986 -1.9744 6 6 1.6156 -2.1573 -3.1087 7 6 2.9268 -2.0348 -3.5092 8 6 3.8118 -1.2330 -2.7653 9 6 5.1595 -1.0950 -3.1704 10 1 5.6486 -1.8981 -3.7016 11 6 5.8594 0.0823 -2.8831 12 7 7.1670 0.0923 -2.9234 13 14 4.9267 1.6396 -2.4422 14 1 4.8381 1.7620 -0.9650 15 1 5.6417 2.8181 -2.9946 16 1 3.5587 1.5767 -3.0167 17 6 3.3473 -0.5739 -1.6119 18 6 2.0400 -0.7213 1.2492 19 9 3.4390 -0.7218 1.2489 20 9 1.5737 -0.0618 2.3915 21 9 1.5737 -2.0403 1.2491 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.1371 -1.6003 -1.6675 26 1 0.9332 -2.7683 -3.6808 27 1 3.2737 -2.5486 -4.3935 28 1 7.6521 0.9084 -2.7246 29 1 4.0190 0.0412 -1.0315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260468439.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:09 Heat of formation + Delta-G solvation = -200.860054 kcal Electronic energy + Delta-G solvation = -20645.441012 eV Core-core repulsion = 16838.926115 eV Total energy + Delta-G solvation = -3806.514897 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.41646 -49.32844 -48.82947 -48.59240 -39.88451 -36.02294 -34.76737 -32.21260 -30.65178 -27.97400 -26.85048 -24.19374 -23.24550 -21.55071 -19.82842 -19.74736 -19.37016 -18.99059 -18.06246 -16.81872 -16.58260 -16.31634 -15.63355 -15.59503 -15.53255 -15.33484 -15.20272 -15.00701 -14.92263 -14.90121 -14.45940 -14.05789 -13.74226 -13.68379 -13.14282 -12.92782 -12.70851 -12.58231 -12.30541 -12.11079 -11.67305 -11.50626 -11.07485 -9.67476 -9.53730 -8.96198 -6.55873 0.44094 0.76735 1.23237 1.25642 1.39153 1.43383 2.04528 2.35114 2.50122 2.69506 2.77384 3.22401 3.41236 3.49744 3.71911 4.28819 4.46646 4.54483 4.63357 4.70265 4.87147 4.94304 5.05778 5.20911 5.42105 5.68163 5.80360 5.84942 6.18255 6.30179 6.64117 6.77759 8.12140 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.021956 B = 0.009860 C = 0.008406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.967746 B = 2839.212525 C = 3330.015044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.125 3.875 3 F -0.191 7.191 4 C -0.115 4.115 5 C -0.185 4.185 6 C -0.083 4.083 7 C -0.199 4.199 8 C 0.065 3.935 9 C -0.483 4.483 10 H 0.064 0.936 11 C 0.054 3.946 12 N -0.846 5.846 13 Si 0.947 3.053 14 H -0.270 1.270 15 H -0.272 1.272 16 H -0.249 1.249 17 C -0.219 4.219 18 C 0.437 3.563 19 F -0.188 7.188 20 F -0.171 7.171 21 F -0.162 7.162 22 H 0.113 0.887 23 H 0.097 0.903 24 H 0.107 0.893 25 H 0.155 0.845 26 H 0.148 0.852 27 H 0.111 0.889 28 H 0.293 0.707 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.639 0.370 6.013 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.106 3.894 3 F -0.171 7.171 4 C -0.116 4.116 5 C -0.204 4.204 6 C -0.101 4.101 7 C -0.219 4.219 8 C 0.063 3.937 9 C -0.513 4.513 10 H 0.082 0.918 11 C -0.161 4.161 12 N -0.472 5.472 13 Si 0.771 3.229 14 H -0.196 1.196 15 H -0.198 1.198 16 H -0.172 1.172 17 C -0.239 4.239 18 C 0.382 3.618 19 F -0.169 7.169 20 F -0.153 7.153 21 F -0.143 7.143 22 H 0.132 0.868 23 H 0.115 0.885 24 H 0.125 0.875 25 H 0.172 0.828 26 H 0.165 0.835 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.323 0.485 6.040 15.552 hybrid contribution 1.042 0.644 0.377 1.281 sum -13.281 1.129 6.417 14.793 Atomic orbital electron populations 1.22582 0.85933 1.07206 1.06807 1.21007 0.99901 0.77937 0.90581 1.92925 1.90805 1.36289 1.97074 1.19530 0.94568 1.01318 0.96168 1.20925 0.99871 1.01906 0.97665 1.21146 0.94881 0.97930 0.96100 1.21441 0.94280 1.05246 1.00898 1.17852 0.92995 0.92153 0.90728 1.19475 0.95462 1.02304 1.34065 0.91796 1.26653 0.95166 1.03069 0.91242 1.69709 1.08757 1.31173 1.37575 0.85757 0.80301 0.77627 0.79191 1.19647 1.19838 1.17234 1.20927 0.95873 1.07630 0.99430 1.21018 0.75802 0.78879 0.86110 1.93215 1.30607 1.96379 1.96712 1.93188 1.88192 1.80585 1.53298 1.93192 1.88141 1.36300 1.96661 0.86834 0.88465 0.87471 0.82771 0.83457 0.87093 0.89659 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 7.49 71.98 0.54 -3.09 15 2 C 0.13 4.17 0.99 -11.54 -0.01 4.16 15 3 F -0.19 -7.21 16.40 44.97 0.74 -6.47 15 4 C -0.12 -4.52 4.65 -19.92 -0.09 -4.61 15 5 C -0.19 -6.08 9.10 22.46 0.20 -5.88 15 6 C -0.08 -2.85 10.02 22.22 0.22 -2.62 15 7 C -0.20 -8.58 9.80 22.73 0.22 -8.35 15 8 C 0.07 3.30 5.10 -21.29 -0.11 3.19 15 9 C -0.48 -27.35 9.57 23.46 0.22 -27.13 15 10 H 0.06 3.83 8.06 -2.91 -0.02 3.80 15 11 C 0.05 2.98 5.40 85.26 0.46 3.44 15 12 N -0.85 -47.71 13.93 21.83 0.30 -47.40 15 13 Si 0.95 45.33 24.52 68.60 1.68 47.01 15 14 H -0.27 -13.04 6.71 99.48 0.67 -12.37 15 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 16 H -0.25 -11.93 6.87 99.48 0.68 -11.25 15 17 C -0.22 -10.55 5.70 22.73 0.13 -10.42 15 18 C 0.44 14.68 2.43 71.98 0.18 14.86 15 19 F -0.19 -7.64 15.80 44.97 0.71 -6.93 15 20 F -0.17 -5.12 16.78 44.97 0.75 -4.36 15 21 F -0.16 -5.03 16.51 44.97 0.74 -4.29 15 22 H 0.11 1.97 6.50 -2.39 -0.02 1.95 15 23 H 0.10 1.73 7.80 -2.39 -0.02 1.71 15 24 H 0.11 2.06 8.11 -2.39 -0.02 2.04 15 25 H 0.15 3.61 5.93 -2.91 -0.02 3.60 15 26 H 0.15 3.79 8.06 -2.91 -0.02 3.76 15 27 H 0.11 4.53 8.06 -2.91 -0.02 4.51 15 28 H 0.29 14.96 8.30 -92.71 -0.77 14.19 15 29 H 0.09 4.54 4.19 -2.91 -0.01 4.53 15 Total: -1.00 -61.84 259.85 8.03 -53.81 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 1.13 Total: 5.10 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 1.97 Total: -36.46 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.30 Total: -47.40 kcal Atomic # 9 Polarization: -25.00 SS G_CDS: 2.94 Total: -22.06 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.68 Total: 47.01 kcal Total: -61.84 8.03 -53.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260468439.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.053 kcal (2) G-P(sol) polarization free energy of solvation -61.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds