Wall clock time and date at job start Mon Mar 30 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48501 * 109.47285 * 269.99818 * 3 2 1 5 5 H 1.48494 * 109.47210 * 30.00085 * 3 2 1 6 6 H 1.48503 * 109.47030 * 150.00200 * 3 2 1 7 7 C 1.37881 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99746 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.38148 * 119.99502 * 264.99832 * 10 9 7 12 12 C 1.38685 * 119.99791 * 179.97438 * 11 10 9 13 13 O 1.35982 * 119.99725 * 179.97438 * 12 11 10 14 14 C 1.38717 * 119.99673 * 0.02562 * 12 11 10 15 15 C 1.38104 * 120.00404 * 0.02562 * 14 12 11 16 16 C 1.50694 * 120.00231 * 179.97438 * 15 14 12 17 17 F 1.39901 * 109.47236 * 359.97438 * 16 15 14 18 18 F 1.39911 * 109.47295 * 119.99634 * 16 15 14 19 19 F 1.39898 * 109.47252 * 239.99912 * 16 15 14 20 20 C 1.38672 * 120.00377 * 84.72327 * 10 9 7 21 21 O 1.35986 * 119.99640 * 359.97438 * 20 10 9 22 22 H 0.96996 * 120.00425 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47496 * 60.00360 * 9 7 2 24 24 H 1.09005 * 109.47284 * 299.99896 * 9 7 2 25 25 H 1.07999 * 120.00301 * 359.97438 * 11 10 9 26 26 H 0.96696 * 114.00561 * 90.00726 * 13 12 11 27 27 H 1.08001 * 119.99475 * 179.97438 * 14 12 11 28 28 H 0.96705 * 114.00144 * 90.00194 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.5999 -4.2373 -1.1924 12 6 3.5016 -5.2911 -1.1926 13 8 3.8649 -5.8748 -2.3657 14 6 4.0319 -5.7502 0.0042 15 6 3.6617 -5.1583 1.1958 16 6 4.2374 -5.6575 2.4959 17 9 5.1143 -6.7173 2.2412 18 9 4.9307 -4.6196 3.1280 19 9 3.2012 -6.0993 3.3256 20 6 2.7650 -4.0999 1.1953 21 8 2.4059 -3.5124 2.3679 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.1867 -3.8801 -2.1241 26 1 4.6386 -5.4717 -2.7827 27 1 4.7337 -6.5711 0.0041 28 1 1.6332 -3.9138 2.7886 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260514639.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:38 Heat of formation + Delta-G solvation = -242.568811 kcal Electronic energy + Delta-G solvation = -19833.105843 eV Core-core repulsion = 16012.409529 eV Total energy + Delta-G solvation = -3820.696314 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.18326 -48.70993 -48.62898 -41.26335 -38.95090 -36.68273 -35.52591 -33.58922 -30.77732 -28.86353 -27.03940 -25.45090 -23.23144 -22.36565 -19.78562 -19.59195 -19.42091 -19.29480 -18.49361 -17.91351 -17.25424 -16.58666 -16.53592 -15.96607 -15.49446 -15.44999 -15.08218 -14.87244 -14.80976 -14.63742 -14.32559 -14.02401 -13.85713 -13.56100 -13.10448 -13.03701 -12.65641 -12.54330 -12.08161 -11.95214 -11.60440 -11.19184 -10.59452 -10.09695 -9.44642 -8.20851 -6.31163 -0.20749 0.12014 1.39614 1.41318 1.52070 1.59084 2.23888 2.44288 2.62738 2.94243 3.09832 3.12359 3.34965 3.40106 3.86067 4.06773 4.29191 4.46570 4.76742 4.89778 5.04319 5.19735 5.31262 5.55039 5.69183 5.72892 6.14396 6.69783 6.78081 6.82367 7.36278 8.89041 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.006825 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.927296 B = 4101.458291 C = 4801.857560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.049 0.951 9 C 0.065 3.935 10 C -0.075 4.075 11 C -0.107 4.107 12 C 0.108 3.892 13 O -0.495 6.495 14 C -0.099 4.099 15 C -0.204 4.204 16 C 0.524 3.476 17 F -0.172 7.172 18 F -0.179 7.179 19 F -0.177 7.177 20 C 0.138 3.862 21 O -0.493 6.493 22 H 0.265 0.735 23 H 0.013 0.987 24 H 0.015 0.985 25 H 0.140 0.860 26 H 0.414 0.586 27 H 0.168 0.832 28 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.567 -12.371 0.473 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.029 3.971 10 C -0.075 4.075 11 C -0.126 4.126 12 C 0.063 3.937 13 O -0.308 6.308 14 C -0.117 4.117 15 C -0.206 4.206 16 C 0.470 3.530 17 F -0.153 7.153 18 F -0.161 7.161 19 F -0.159 7.159 20 C 0.092 3.908 21 O -0.305 6.305 22 H 0.074 0.926 23 H 0.032 0.968 24 H 0.033 0.967 25 H 0.158 0.842 26 H 0.273 0.727 27 H 0.185 0.815 28 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 8.439 -12.273 0.514 14.903 hybrid contribution 0.092 1.032 0.321 1.084 sum 8.531 -11.242 0.835 14.137 Atomic orbital electron populations 1.70042 1.07398 1.27878 1.51413 1.25779 0.95698 1.02684 0.94713 0.85532 0.78546 0.78952 0.78558 1.19450 1.20624 1.19625 1.21227 0.92764 0.91107 1.50696 0.93287 1.17974 0.92457 0.89954 0.96765 1.20632 0.98079 0.96600 0.92226 1.21578 0.98030 0.94574 0.98390 1.18067 0.96634 0.92831 0.86137 1.84779 1.53282 1.59016 1.33744 1.21162 1.00273 1.00588 0.89707 1.20198 1.05887 1.00955 0.93607 1.17895 0.75791 0.74953 0.84393 1.93152 1.70251 1.57849 1.94056 1.93224 1.80090 1.58778 1.83966 1.93180 1.58616 1.89694 1.74373 1.18004 0.95343 0.90813 0.86605 1.84869 1.52190 1.59586 1.33886 0.92589 0.96842 0.96693 0.84247 0.72651 0.81498 0.73827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.32 13.29 21.45 0.28 -54.04 15 2 C 0.01 0.54 5.46 84.66 0.46 1.00 15 3 Si 0.96 43.89 29.54 68.60 2.03 45.91 15 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 7 C -0.52 -28.83 9.09 25.60 0.23 -28.59 15 8 H 0.05 2.73 7.74 -2.91 -0.02 2.70 15 9 C 0.07 3.28 4.82 29.10 0.14 3.42 15 10 C -0.07 -3.04 5.08 -19.78 -0.10 -3.14 15 11 C -0.11 -3.69 9.62 22.36 0.21 -3.47 15 12 C 0.11 3.03 6.70 22.49 0.15 3.18 15 13 O -0.49 -10.95 13.50 -93.35 -1.26 -12.21 15 14 C -0.10 -2.66 9.37 22.35 0.21 -2.45 15 15 C -0.20 -6.40 5.38 -19.78 -0.11 -6.50 15 16 C 0.52 15.18 2.99 71.23 0.21 15.40 15 17 F -0.17 -4.36 15.97 44.97 0.72 -3.64 15 18 F -0.18 -5.80 16.93 44.97 0.76 -5.04 15 19 F -0.18 -5.01 16.96 44.97 0.76 -4.24 15 20 C 0.14 5.15 6.56 22.49 0.15 5.29 15 21 O -0.49 -18.71 11.54 -93.39 -1.08 -19.79 15 22 H 0.27 14.64 8.31 -92.71 -0.77 13.87 15 23 H 0.01 0.70 8.05 -2.39 -0.02 0.68 15 24 H 0.01 0.79 7.69 -2.38 -0.02 0.77 15 25 H 0.14 4.65 8.06 -2.91 -0.02 4.63 15 26 H 0.41 4.96 9.06 -74.06 -0.67 4.29 15 27 H 0.17 3.53 7.15 -2.91 -0.02 3.51 15 28 H 0.40 11.78 9.06 -74.05 -0.67 11.11 15 Total: -1.00 -65.51 269.24 3.68 -61.83 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -0.10 Total: 7.09 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 1.56 Total: -15.87 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.28 Total: -54.04 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -2.34 Total: -32.00 kcal Atomic # 9 Polarization: -15.17 SS G_CDS: 2.24 Total: -12.92 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -65.51 3.68 -61.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260514639.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.742 kcal (2) G-P(sol) polarization free energy of solvation -65.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds