Wall clock time and date at job start Mon Mar 30 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99524 * 2 1 4 4 H 1.48500 * 109.46871 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47425 * 300.00066 * 3 2 1 6 6 H 1.48498 * 109.47203 * 60.00416 * 3 2 1 7 7 C 1.37877 * 120.00446 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99876 * 185.76955 * 7 2 1 9 9 C 1.50699 * 119.99834 * 5.76678 * 7 2 1 10 10 C 1.50692 * 115.55128 * 324.60059 * 9 7 2 11 11 C 1.39426 * 120.21038 * 98.01793 * 10 9 7 12 12 C 1.46781 * 134.32380 * 359.97114 * 11 10 9 13 13 C 1.33995 * 106.18319 * 180.02562 * 12 11 10 14 14 O 1.34435 * 110.15617 * 0.02562 * 13 12 11 15 15 C 1.34857 * 110.89105 * 359.97438 * 14 13 12 16 16 C 1.38921 * 133.39950 * 180.02562 * 15 14 13 17 17 C 1.37812 * 119.97959 * 180.22877 * 16 15 14 18 18 C 1.37831 * 120.20269 * 277.99057 * 10 9 7 19 19 Cl 1.73597 * 119.87466 * 0.04725 * 18 10 9 20 20 C 1.53007 * 117.49544 * 110.26589 * 9 7 2 21 21 C 1.53004 * 117.49803 * 178.92274 * 9 7 2 22 22 H 0.96999 * 120.00453 * 354.97826 * 1 2 3 23 23 H 1.07995 * 126.90901 * 359.97372 * 12 11 10 24 24 H 1.08003 * 124.92148 * 180.02562 * 13 12 11 25 25 H 1.08005 * 120.00921 * 359.94338 * 16 15 14 26 26 H 1.07999 * 119.66315 * 179.72599 * 17 16 15 27 27 H 1.08993 * 117.49510 * 215.00201 * 20 9 7 28 28 H 1.08992 * 117.49905 * 0.02562 * 20 9 7 29 29 H 1.08997 * 117.49484 * 359.97438 * 21 9 7 30 30 H 1.08991 * 117.49686 * 144.97560 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0805 -1.1963 0.0935 9 6 1.2569 -2.4958 -0.1323 10 6 -0.0914 -2.5417 0.5391 11 6 -1.2521 -2.3258 -0.2027 12 6 -1.5276 -2.0347 -1.6147 13 6 -2.8592 -1.9308 -1.7217 14 8 -3.4369 -2.1264 -0.5236 15 6 -2.5085 -2.3684 0.4241 16 6 -2.5809 -2.6281 1.7869 17 6 -1.4266 -2.8359 2.5106 18 6 -0.1850 -2.7979 1.8901 19 17 1.2554 -3.0673 2.8209 20 6 1.4233 -3.2771 -1.4372 21 6 2.0809 -3.7849 -0.1515 22 1 -0.4851 0.8368 0.0735 23 1 -0.8027 -1.9255 -2.4078 24 1 -3.3913 -1.7203 -2.6377 25 1 -3.5412 -2.6627 2.2799 26 1 -1.4886 -3.0331 3.5706 27 1 0.5576 -3.8243 -1.8100 28 1 2.0739 -2.8497 -2.2002 29 1 3.1637 -3.6913 -0.0694 30 1 1.6478 -4.6660 0.3218 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260522238.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:59 Heat of formation + Delta-G solvation = 51.931610 kcal Electronic energy + Delta-G solvation = -17729.412421 eV Core-core repulsion = 14904.052509 eV Total energy + Delta-G solvation = -2825.359912 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.51349 -37.87720 -35.71632 -35.09439 -32.17551 -31.67164 -29.07584 -28.39417 -25.62411 -22.81683 -21.86825 -21.07564 -20.64084 -19.05109 -16.93591 -16.57098 -15.76525 -15.21128 -15.02706 -14.64108 -13.92879 -13.41714 -13.21620 -12.48113 -12.08297 -12.01792 -11.78035 -11.66211 -11.06471 -11.00866 -10.78697 -10.46259 -10.34499 -10.17152 -10.00120 -9.49299 -9.26253 -9.05300 -8.78152 -8.30384 -7.52875 -7.17379 -5.92378 -4.12005 1.84669 2.21206 3.20481 3.24928 3.27515 3.34306 3.37367 3.62802 4.35361 4.60987 4.92313 5.34975 5.45814 5.51243 5.85505 5.87721 6.03202 6.17619 6.24879 6.33952 6.50229 6.66219 6.70760 6.77175 6.90428 6.92184 7.15639 7.23940 7.30162 7.43580 7.53834 7.80775 8.00436 8.27834 8.83056 9.46823 10.94375 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.011733 C = 0.009347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.963668 B = 2385.921028 C = 2994.844339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.073 3.927 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.480 4.480 8 H 0.065 0.935 9 C 0.078 3.922 10 C 0.109 3.891 11 C -0.052 4.052 12 C -0.143 4.143 13 C -0.045 4.045 14 O -0.207 6.207 15 C 0.038 3.962 16 C -0.132 4.132 17 C -0.091 4.091 18 C -0.067 4.067 19 Cl -0.080 7.080 20 C -0.206 4.206 21 C -0.192 4.192 22 H 0.261 0.739 23 H 0.147 0.853 24 H 0.193 0.807 25 H 0.121 0.879 26 H 0.126 0.874 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.064 -4.806 0.145 6.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.131 4.131 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.517 4.517 8 H 0.084 0.916 9 C 0.077 3.923 10 C 0.108 3.892 11 C -0.054 4.054 12 C -0.162 4.162 13 C -0.109 4.109 14 O -0.110 6.110 15 C -0.009 4.009 16 C -0.151 4.151 17 C -0.110 4.110 18 C -0.093 4.093 19 Cl -0.051 7.051 20 C -0.244 4.244 21 C -0.229 4.229 22 H 0.072 0.928 23 H 0.165 0.835 24 H 0.210 0.790 25 H 0.139 0.861 26 H 0.144 0.856 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.374 -4.667 0.218 6.400 hybrid contribution 0.685 1.223 -0.039 1.402 sum -3.689 -3.444 0.180 5.050 Atomic orbital electron populations 1.70017 1.05427 1.26421 1.48105 1.25003 0.94946 0.99042 0.94113 0.86522 0.80205 0.83712 0.77582 1.19721 1.21011 1.21006 1.20409 0.92791 0.87626 1.50877 0.91646 1.17707 0.89403 0.91273 0.93870 1.18462 0.93625 0.87102 0.90051 1.19115 0.91638 1.01369 0.93241 1.22309 0.94603 1.03348 0.95973 1.23551 0.93298 1.06975 0.87093 1.83871 1.35841 1.75056 1.16271 1.19548 0.87138 1.03536 0.90697 1.19327 0.98196 1.08644 0.88899 1.20447 0.90018 1.01538 0.99010 1.20206 0.86751 1.10582 0.91801 1.98283 1.38989 1.95041 1.72797 1.23168 1.02016 1.06585 0.92629 1.22871 0.98658 0.98935 1.02427 0.92838 0.83517 0.79034 0.86143 0.85579 0.91424 0.90124 0.90209 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.92 9.45 55.43 0.52 -22.40 16 2 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.48 -12.49 9.05 -34.44 -0.31 -12.80 16 8 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 9 C 0.08 1.85 1.23 -156.81 -0.19 1.66 16 10 C 0.11 2.55 3.51 -104.33 -0.37 2.19 16 11 C -0.05 -1.18 4.19 -105.16 -0.44 -1.62 16 12 C -0.14 -2.92 9.52 -37.62 -0.36 -3.28 16 13 C -0.05 -0.80 11.96 29.24 0.35 -0.45 16 14 O -0.21 -4.08 10.58 3.81 0.04 -4.04 16 15 C 0.04 0.80 7.41 -38.49 -0.29 0.52 16 16 C -0.13 -2.52 10.06 -39.48 -0.40 -2.91 16 17 C -0.09 -1.76 9.79 -39.51 -0.39 -2.15 16 18 C -0.07 -1.46 6.29 -39.50 -0.25 -1.71 16 19 Cl -0.08 -1.63 27.11 -51.86 -1.41 -3.04 16 20 C -0.21 -4.42 8.85 -26.69 -0.24 -4.66 16 21 C -0.19 -4.06 8.87 -26.69 -0.24 -4.30 16 22 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 23 H 0.15 2.95 7.67 -52.49 -0.40 2.55 16 24 H 0.19 2.45 8.06 -52.48 -0.42 2.03 16 25 H 0.12 1.91 8.06 -52.48 -0.42 1.49 16 26 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 27 H 0.07 1.38 7.59 -51.93 -0.39 0.99 16 28 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 29 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 274.13 15.07 4.13 4.13 Total: -1.00 -27.88 274.13 -7.82 -35.70 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -2.88 Total: 1.65 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -3.21 Total: -27.71 kcal Atomic # 7 Polarization: -22.92 SS G_CDS: 0.52 Total: -22.40 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: 0.04 Total: -4.04 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -1.41 Total: -3.04 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.88 -7.82 -35.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260522238.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.632 kcal (2) G-P(sol) polarization free energy of solvation -27.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds