Wall clock time and date at job start Mon Mar 30 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99524 * 2 1 4 4 H 1.48500 * 109.46871 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47425 * 300.00066 * 3 2 1 6 6 H 1.48498 * 109.47203 * 60.00416 * 3 2 1 7 7 C 1.37877 * 120.00446 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99876 * 185.76955 * 7 2 1 9 9 C 1.50699 * 119.99834 * 5.76678 * 7 2 1 10 10 C 1.50692 * 115.55128 * 324.60059 * 9 7 2 11 11 C 1.39426 * 120.21038 * 98.01793 * 10 9 7 12 12 C 1.46781 * 134.32380 * 359.97114 * 11 10 9 13 13 C 1.33995 * 106.18319 * 180.02562 * 12 11 10 14 14 O 1.34435 * 110.15617 * 0.02562 * 13 12 11 15 15 C 1.34857 * 110.89105 * 359.97438 * 14 13 12 16 16 C 1.38921 * 133.39950 * 180.02562 * 15 14 13 17 17 C 1.37812 * 119.97959 * 180.22877 * 16 15 14 18 18 C 1.37831 * 120.20269 * 277.99057 * 10 9 7 19 19 Cl 1.73597 * 119.87466 * 0.04725 * 18 10 9 20 20 C 1.53007 * 117.49544 * 110.26589 * 9 7 2 21 21 C 1.53004 * 117.49803 * 178.92274 * 9 7 2 22 22 H 0.96999 * 120.00453 * 354.97826 * 1 2 3 23 23 H 1.07995 * 126.90901 * 359.97372 * 12 11 10 24 24 H 1.08003 * 124.92148 * 180.02562 * 13 12 11 25 25 H 1.08005 * 120.00921 * 359.94338 * 16 15 14 26 26 H 1.07999 * 119.66315 * 179.72599 * 17 16 15 27 27 H 1.08993 * 117.49510 * 215.00201 * 20 9 7 28 28 H 1.08992 * 117.49905 * 0.02562 * 20 9 7 29 29 H 1.08997 * 117.49484 * 359.97438 * 21 9 7 30 30 H 1.08991 * 117.49686 * 144.97560 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0805 -1.1963 0.0935 9 6 1.2569 -2.4958 -0.1323 10 6 -0.0914 -2.5417 0.5391 11 6 -1.2521 -2.3258 -0.2027 12 6 -1.5276 -2.0347 -1.6147 13 6 -2.8592 -1.9308 -1.7217 14 8 -3.4369 -2.1264 -0.5236 15 6 -2.5085 -2.3684 0.4241 16 6 -2.5809 -2.6281 1.7869 17 6 -1.4266 -2.8359 2.5106 18 6 -0.1850 -2.7979 1.8901 19 17 1.2554 -3.0673 2.8209 20 6 1.4233 -3.2771 -1.4372 21 6 2.0809 -3.7849 -0.1515 22 1 -0.4851 0.8368 0.0735 23 1 -0.8027 -1.9255 -2.4078 24 1 -3.3913 -1.7203 -2.6377 25 1 -3.5412 -2.6627 2.2799 26 1 -1.4886 -3.0331 3.5706 27 1 0.5576 -3.8243 -1.8100 28 1 2.0739 -2.8497 -2.2002 29 1 3.1637 -3.6913 -0.0694 30 1 1.6478 -4.6660 0.3218 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260522238.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:59 Heat of formation + Delta-G solvation = 38.938061 kcal Electronic energy + Delta-G solvation = -17729.975864 eV Core-core repulsion = 14904.052509 eV Total energy + Delta-G solvation = -2825.923355 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.050 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.02130 -39.50018 -37.36913 -36.67741 -34.10812 -33.19754 -30.65035 -29.90053 -27.56143 -24.38421 -23.48853 -22.68159 -22.24495 -20.76282 -18.69388 -18.03487 -17.39819 -16.76670 -16.56927 -16.50603 -15.65137 -14.98769 -14.90760 -14.03808 -13.69010 -13.61816 -13.37222 -13.23362 -12.91941 -12.82130 -12.55489 -12.17994 -12.09383 -11.75537 -11.66054 -11.24007 -10.99421 -10.74940 -10.50413 -10.15146 -9.07368 -8.77212 -7.82278 -6.10616 0.34343 0.60864 1.38661 1.44020 1.51928 1.60614 1.79305 2.17952 2.44039 3.00118 3.07808 3.64368 3.90567 4.03072 4.29496 4.41438 4.53567 4.56357 4.70035 4.74550 4.91808 4.95711 5.08738 5.19645 5.27691 5.39487 5.54283 5.61878 5.73276 5.75513 5.87693 5.93980 6.38634 6.48148 6.84355 7.48223 8.96179 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.011733 C = 0.009347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.963668 B = 2385.921028 C = 2994.844339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.494 4.494 8 H 0.051 0.949 9 C 0.057 3.943 10 C 0.079 3.921 11 C -0.072 4.072 12 C -0.180 4.180 13 C -0.017 4.017 14 O -0.208 6.208 15 C 0.016 3.984 16 C -0.124 4.124 17 C -0.097 4.097 18 C -0.083 4.083 19 Cl -0.078 7.078 20 C -0.196 4.196 21 C -0.179 4.179 22 H 0.254 0.746 23 H 0.140 0.860 24 H 0.243 0.757 25 H 0.156 0.844 26 H 0.157 0.843 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.340 -4.920 0.199 7.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.531 4.531 8 H 0.069 0.931 9 C 0.057 3.943 10 C 0.078 3.922 11 C -0.073 4.073 12 C -0.200 4.200 13 C -0.080 4.080 14 O -0.110 6.110 15 C -0.031 4.031 16 C -0.142 4.142 17 C -0.115 4.115 18 C -0.109 4.109 19 Cl -0.049 7.049 20 C -0.234 4.234 21 C -0.216 4.216 22 H 0.064 0.936 23 H 0.158 0.842 24 H 0.259 0.741 25 H 0.173 0.827 26 H 0.174 0.826 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.643 -4.794 0.272 7.409 hybrid contribution 1.056 1.229 -0.078 1.623 sum -4.586 -3.565 0.194 5.812 Atomic orbital electron populations 1.70180 1.05907 1.26102 1.48570 1.25493 0.95644 1.01026 0.94317 0.85784 0.79226 0.81073 0.77203 1.19763 1.20853 1.21369 1.20534 0.92322 0.89212 1.51058 0.93083 1.17717 0.90296 0.90991 0.95340 1.18527 0.93557 0.89288 0.90875 1.19424 0.92077 1.01455 0.94384 1.22371 0.95915 1.06322 0.95367 1.24403 0.92736 1.03255 0.87637 1.83892 1.35651 1.74808 1.16683 1.19906 0.87013 1.04475 0.91738 1.19779 0.99636 1.06508 0.88281 1.20805 0.89122 1.01068 1.00526 1.20547 0.87833 1.10762 0.91794 1.98271 1.39110 1.95020 1.72525 1.23092 1.02129 1.05965 0.92216 1.22838 0.98477 0.98306 1.01997 0.93607 0.84183 0.74111 0.82677 0.82561 0.90592 0.90378 0.90152 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.29 9.45 21.45 0.20 -46.09 16 2 C 0.04 1.97 5.40 84.65 0.46 2.43 16 3 Si 0.94 42.77 29.54 68.60 2.03 44.80 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.49 -25.95 9.05 25.60 0.23 -25.72 16 8 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 9 C 0.06 2.71 1.23 -53.67 -0.07 2.64 16 10 C 0.08 3.67 3.51 -19.68 -0.07 3.60 16 11 C -0.07 -3.20 4.19 -20.21 -0.08 -3.29 16 12 C -0.18 -7.22 9.52 23.54 0.22 -6.99 16 13 C -0.02 -0.56 11.96 66.85 0.80 0.24 16 14 O -0.21 -7.67 10.58 -9.29 -0.10 -7.77 16 15 C 0.02 0.64 7.41 22.98 0.17 0.81 16 16 C -0.12 -4.42 10.06 22.33 0.22 -4.20 16 17 C -0.10 -3.55 9.79 22.32 0.22 -3.33 16 18 C -0.08 -3.55 6.29 22.32 0.14 -3.41 16 19 Cl -0.08 -3.15 27.11 -2.72 -0.07 -3.22 16 20 C -0.20 -8.41 8.85 30.62 0.27 -8.14 16 21 C -0.18 -7.55 8.87 30.62 0.27 -7.28 16 22 H 0.25 13.37 8.32 -92.71 -0.77 12.60 16 23 H 0.14 5.65 7.67 -2.91 -0.02 5.63 16 24 H 0.24 5.13 8.06 -2.91 -0.02 5.11 16 25 H 0.16 4.35 8.06 -2.91 -0.02 4.32 16 26 H 0.16 4.63 8.06 -2.91 -0.02 4.60 16 27 H 0.08 3.09 7.59 -2.39 -0.02 3.07 16 28 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 29 H 0.08 3.32 8.14 -2.39 -0.02 3.31 16 30 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -59.11 274.13 6.00 -53.10 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.16 Total: 11.81 kcal Atomic # 6 Polarization: -55.43 SS G_CDS: 2.79 Total: -52.64 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.20 Total: -46.09 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.10 Total: -7.77 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 17 Polarization: -3.15 SS G_CDS: -0.07 Total: -3.22 kcal Total: -59.11 6.00 -53.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260522238.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.041 kcal (2) G-P(sol) polarization free energy of solvation -59.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds