Wall clock time and date at job start Mon Mar 30 2020 06:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39900 * 109.46781 * 2 1 4 4 C 1.50708 * 109.46545 * 240.00619 * 2 1 3 5 5 C 1.38632 * 119.74401 * 164.99795 * 4 2 1 6 6 C 1.37624 * 120.24747 * 179.97438 * 5 4 2 7 7 C 1.40715 * 119.74131 * 0.02562 * 6 5 4 8 8 C 1.41399 * 120.23986 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00215 * 335.39104 * 8 7 6 10 10 C 1.39941 * 119.99722 * 155.39887 * 8 7 6 11 11 N 1.30829 * 120.00095 * 342.38320 * 10 8 7 12 12 Si 1.86803 * 120.00143 * 162.39016 * 10 8 7 13 13 H 1.48503 * 109.47194 * 94.65747 * 12 10 8 14 14 H 1.48490 * 109.47218 * 214.65999 * 12 10 8 15 15 H 1.48496 * 109.46907 * 334.66335 * 12 10 8 16 16 C 1.40715 * 119.51432 * 0.25861 * 7 6 5 17 17 C 1.37620 * 119.74069 * 359.46511 * 16 7 6 18 18 C 1.52998 * 109.47554 * 120.00663 * 2 1 3 19 19 F 1.39899 * 109.47012 * 180.02562 * 18 2 1 20 20 F 1.39904 * 109.46876 * 299.99797 * 18 2 1 21 21 F 1.39896 * 109.47255 * 59.99764 * 18 2 1 22 22 H 1.09003 * 109.47282 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47225 * 299.99159 * 1 2 3 24 24 H 1.08999 * 109.47947 * 59.99413 * 1 2 3 25 25 H 1.08008 * 119.87904 * 359.97382 * 5 4 2 26 26 H 1.07996 * 120.12669 * 180.02562 * 6 5 4 27 27 H 0.96995 * 120.00023 * 180.02562 * 11 10 8 28 28 H 1.07995 * 120.12909 * 179.72124 * 16 7 6 29 29 H 1.08007 * 119.86999 * 180.27121 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 6 2.0322 -0.7103 -1.2306 5 6 3.3576 -0.5710 -1.6125 6 6 3.8274 -1.2154 -2.7341 7 6 2.9565 -2.0176 -3.4945 8 6 3.4278 -2.6840 -4.6491 9 1 4.2871 -2.3020 -5.1802 10 6 2.7806 -3.8385 -5.1038 11 7 1.9803 -4.4971 -4.3055 12 14 3.0596 -4.4392 -6.8504 13 1 4.1376 -5.4606 -6.8564 14 1 1.8062 -5.0394 -7.3736 15 1 3.4570 -3.2952 -7.7097 16 6 1.6117 -2.1469 -3.1008 17 6 1.1653 -1.4979 -1.9723 18 6 2.0401 -0.7214 1.2491 19 9 3.4391 -0.7208 1.2493 20 9 1.5738 -0.0619 2.3915 21 9 1.5738 -2.0403 1.2490 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8901 24 1 -0.3635 0.5139 -0.8899 25 1 4.0241 0.0456 -1.0275 26 1 4.8603 -1.1058 -3.0296 27 1 1.5320 -5.2975 -4.6205 28 1 0.9336 -2.7564 -3.6795 29 1 0.1347 -1.5992 -1.6657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260580488.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:17 Heat of formation + Delta-G solvation = -202.640925 kcal Electronic energy + Delta-G solvation = -20089.751026 eV Core-core repulsion = 16283.158904 eV Total energy + Delta-G solvation = -3806.592121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.30093 -49.15319 -48.71450 -48.46254 -39.60572 -36.16676 -34.34286 -31.32988 -30.92499 -27.77323 -27.05518 -23.75619 -22.90360 -21.60114 -19.66490 -19.56326 -19.37158 -19.06906 -17.66471 -16.93141 -16.44739 -15.73405 -15.55935 -15.46810 -15.33139 -15.11385 -15.05665 -14.87767 -14.83639 -14.73061 -14.07898 -14.04664 -13.52689 -13.48202 -13.09594 -12.79195 -12.73498 -12.46088 -12.29156 -12.01901 -11.49818 -11.29802 -11.06904 -9.49684 -9.40778 -8.72775 -6.44943 0.69682 1.08112 1.38408 1.41625 1.53589 1.60933 2.18545 2.48176 2.62207 2.85376 2.95695 3.42643 3.67924 3.68970 3.86570 4.38694 4.44627 4.59043 4.71311 4.94737 5.02296 5.09381 5.24389 5.34127 5.60433 5.78194 6.00845 6.01934 6.27608 6.59503 6.84600 6.91467 8.23998 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.038993 B = 0.005633 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.908920 B = 4969.403923 C = 5060.472280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.155 3.845 3 F -0.189 7.189 4 C -0.274 4.274 5 C -0.059 4.059 6 C -0.248 4.248 7 C 0.093 3.907 8 C -0.489 4.489 9 H 0.079 0.921 10 C 0.039 3.961 11 N -0.812 5.812 12 Si 0.984 3.016 13 H -0.263 1.263 14 H -0.263 1.263 15 H -0.259 1.259 16 C -0.193 4.193 17 C -0.064 4.064 18 C 0.435 3.565 19 F -0.184 7.184 20 F -0.176 7.176 21 F -0.172 7.172 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.293 0.707 28 H 0.110 0.890 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 4.142 5.527 8.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.135 3.865 3 F -0.169 7.169 4 C -0.276 4.276 5 C -0.077 4.077 6 C -0.267 4.267 7 C 0.091 3.909 8 C -0.517 4.517 9 H 0.097 0.903 10 C -0.178 4.178 11 N -0.437 5.437 12 Si 0.804 3.196 13 H -0.188 1.188 14 H -0.187 1.187 15 H -0.182 1.182 16 C -0.213 4.213 17 C -0.083 4.083 18 C 0.380 3.620 19 F -0.165 7.165 20 F -0.158 7.158 21 F -0.153 7.153 22 H 0.115 0.885 23 H 0.114 0.886 24 H 0.118 0.882 25 H 0.124 0.876 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.128 0.872 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.316 3.946 5.592 8.091 hybrid contribution 0.632 -0.444 -0.353 0.849 sum -3.683 3.503 5.238 7.299 Atomic orbital electron populations 1.22509 0.88056 1.06054 1.06225 1.20404 0.98267 0.77712 0.90077 1.92903 1.90642 1.36225 1.97125 1.19060 0.95889 1.11516 1.01129 1.20574 0.94488 0.96890 0.95757 1.21112 0.98722 1.07845 0.99020 1.18081 0.91974 0.89420 0.91447 1.19970 1.13476 1.08770 1.09521 0.90261 1.26797 0.92582 0.95425 1.03035 1.69849 1.22227 1.14154 1.37431 0.85163 0.79137 0.78901 0.76396 1.18791 1.18695 1.18232 1.21296 0.95812 1.04461 0.99687 1.20835 0.98641 0.94673 0.94101 1.21261 0.75881 0.78651 0.86183 1.93161 1.30270 1.96387 1.96732 1.93172 1.88296 1.80570 1.53712 1.93181 1.88315 1.37116 1.96681 0.88506 0.88591 0.88169 0.87560 0.88179 0.89614 0.87168 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 7.49 71.98 0.54 -3.89 15 2 C 0.16 5.27 0.99 -11.54 -0.01 5.25 15 3 F -0.19 -6.62 16.40 44.97 0.74 -5.88 15 4 C -0.27 -11.34 4.67 -19.67 -0.09 -11.43 15 5 C -0.06 -2.63 8.54 22.22 0.19 -2.44 15 6 C -0.25 -12.16 9.80 22.73 0.22 -11.93 15 7 C 0.09 4.91 5.57 -21.29 -0.12 4.79 15 8 C -0.49 -25.45 9.05 23.46 0.21 -25.24 15 9 H 0.08 3.98 7.91 -2.91 -0.02 3.96 15 10 C 0.04 1.85 5.14 85.25 0.44 2.29 15 11 N -0.81 -40.28 10.97 21.83 0.24 -40.04 15 12 Si 0.98 36.20 29.59 68.60 2.03 38.23 15 13 H -0.26 -9.39 7.11 99.48 0.71 -8.68 15 14 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 15 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 16 C -0.19 -9.61 8.70 22.73 0.20 -9.41 15 17 C -0.06 -2.74 9.06 22.22 0.20 -2.54 15 18 C 0.43 14.74 2.43 71.98 0.18 14.92 15 19 F -0.18 -6.81 15.79 44.97 0.71 -6.10 15 20 F -0.18 -5.31 16.78 44.97 0.75 -4.55 15 21 F -0.17 -5.99 16.51 44.97 0.74 -5.25 15 22 H 0.10 2.37 6.49 -2.39 -0.02 2.35 15 23 H 0.10 2.02 7.80 -2.38 -0.02 2.00 15 24 H 0.10 2.43 8.11 -2.39 -0.02 2.41 15 25 H 0.11 4.41 7.50 -2.91 -0.02 4.39 15 26 H 0.10 4.68 8.06 -2.91 -0.02 4.65 15 27 H 0.29 12.99 8.30 -92.71 -0.77 12.22 15 28 H 0.11 5.65 6.18 -2.91 -0.02 5.63 15 29 H 0.13 4.59 5.92 -2.91 -0.02 4.57 15 Total: -1.00 -55.21 265.07 8.36 -46.85 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.19 Total: 16.39 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 1.95 Total: -39.65 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.24 Total: -40.04 kcal Atomic # 9 Polarization: -24.73 SS G_CDS: 2.94 Total: -21.79 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 2.03 Total: 38.23 kcal Total: -55.21 8.36 -46.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260580488.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.794 kcal (2) G-P(sol) polarization free energy of solvation -55.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds