Wall clock time and date at job start Mon Mar 30 2020 06:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38220 * 120.01674 * 2 1 4 4 C 1.38223 * 120.02755 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.97283 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47465 * 359.97438 * 5 4 3 7 7 C 1.50705 * 109.47250 * 239.97688 * 5 4 3 8 8 H 1.08002 * 119.99212 * 0.02562 * 7 5 4 9 9 C 1.37879 * 120.00128 * 180.02562 * 7 5 4 10 10 N 1.31503 * 120.00030 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 119.99712 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47392 * 59.99945 * 11 9 7 13 13 H 1.48498 * 109.47007 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47117 * 299.99504 * 11 9 7 15 15 C 1.53001 * 109.47202 * 119.97861 * 5 4 3 16 16 F 1.39899 * 109.47191 * 59.99668 * 15 5 4 17 17 F 1.39901 * 109.47247 * 179.97438 * 15 5 4 18 18 F 1.39898 * 109.46886 * 299.99842 * 15 5 4 19 19 C 1.38265 * 120.04931 * 359.97438 * 4 3 2 20 20 C 1.38168 * 120.02977 * 359.97438 * 19 4 3 21 21 C 1.38440 * 120.01195 * 180.02562 * 2 1 3 22 22 F 1.35102 * 120.02757 * 0.24616 * 21 2 1 23 23 H 1.09001 * 109.46710 * 269.99878 * 1 2 3 24 24 H 1.09004 * 109.46977 * 29.99518 * 1 2 3 25 25 H 1.08998 * 109.47601 * 150.00108 * 1 2 3 26 26 H 1.08000 * 119.98716 * 0.02562 * 3 2 1 27 27 H 0.96998 * 120.00181 * 180.02562 * 10 9 7 28 28 H 1.08002 * 119.98423 * 179.97438 * 19 4 3 29 29 H 1.08007 * 120.01590 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3332 2.5026 0.0000 6 1 3.6244 3.3307 0.0004 7 6 5.1996 2.5837 -1.2304 8 1 5.2042 1.7711 -1.9419 9 6 5.9861 3.6950 -1.4479 10 7 5.9800 4.6846 -0.5818 11 14 7.0594 3.7956 -2.9735 12 1 6.2052 3.7179 -4.1857 13 1 7.8011 5.0821 -2.9729 14 1 8.0247 2.6672 -2.9749 15 6 5.2129 2.5837 1.2493 16 9 6.1227 1.5209 1.2488 17 9 5.9120 3.7955 1.2495 18 9 4.4087 2.5085 2.3915 19 6 4.2732 0.0004 -0.0005 20 6 3.5842 -1.1973 0.0005 21 6 2.1994 -1.1988 -0.0005 22 9 1.5247 -2.3693 -0.0061 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8901 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 1.6585 2.1322 0.0004 27 1 6.5330 5.4666 -0.7349 28 1 5.3532 0.0018 -0.0014 29 1 4.1255 -2.1319 0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260788898.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:20 Heat of formation + Delta-G solvation = -170.196988 kcal Electronic energy + Delta-G solvation = -20222.644085 eV Core-core repulsion = 16417.458838 eV Total energy + Delta-G solvation = -3805.185247 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.53034 -48.48535 -46.14194 -45.67675 -38.77623 -34.18968 -32.42485 -31.33544 -28.03996 -26.46748 -24.59501 -22.49618 -21.94628 -19.95439 -17.33222 -17.14581 -16.77637 -16.64691 -16.15170 -15.30732 -15.23493 -14.80248 -14.13809 -13.62146 -13.20437 -13.14525 -12.96864 -12.77225 -12.65175 -12.51920 -12.43481 -12.11537 -11.95190 -11.86403 -11.56220 -11.36788 -10.93659 -10.75688 -10.65253 -10.27900 -9.87997 -9.61766 -8.64114 -8.43439 -7.91771 -6.20835 -4.41641 1.64500 1.71282 3.21154 3.26122 3.28566 4.01452 4.24276 4.50324 4.67588 4.93848 5.06669 5.11755 5.35069 5.61640 5.73644 5.73821 5.80665 5.88037 5.94643 6.01591 6.20404 6.40087 6.57859 6.67942 6.80269 6.85408 7.30369 7.40427 7.63423 7.79708 8.58248 9.24348 10.71004 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.007449 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.163578 B = 3758.087770 C = 4162.131274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.127 4.127 3 C -0.088 4.088 4 C -0.055 4.055 5 C 0.048 3.952 6 H 0.073 0.927 7 C -0.529 4.529 8 H 0.073 0.927 9 C 0.062 3.938 10 N -0.845 5.845 11 Si 0.908 3.092 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.433 3.567 16 F -0.205 7.205 17 F -0.137 7.137 18 F -0.227 7.227 19 C -0.082 4.082 20 C -0.154 4.154 21 C 0.074 3.926 22 F -0.149 7.149 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.129 0.871 27 H 0.266 0.734 28 H 0.143 0.857 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.582 -5.910 1.337 8.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.128 4.128 3 C -0.106 4.106 4 C -0.056 4.056 5 C 0.028 3.972 6 H 0.090 0.910 7 C -0.566 4.566 8 H 0.091 0.909 9 C -0.146 4.146 10 N -0.479 5.479 11 Si 0.735 3.265 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.378 3.622 16 F -0.187 7.187 17 F -0.118 7.118 18 F -0.209 7.209 19 C -0.100 4.100 20 C -0.173 4.173 21 C 0.055 3.945 22 F -0.128 7.128 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.147 0.853 27 H 0.077 0.923 28 H 0.160 0.840 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.503 -5.734 1.407 8.071 hybrid contribution 0.712 -0.091 -0.507 0.879 sum -4.791 -5.824 0.900 7.596 Atomic orbital electron populations 1.20653 0.90786 1.02776 1.02262 1.19785 0.96450 0.91993 1.04528 1.20834 0.93582 0.96753 0.99423 1.20114 0.93273 0.95899 0.96275 1.18975 0.94262 0.92117 0.91848 0.90953 1.20761 1.25653 1.04682 1.05485 0.90852 1.25141 0.96801 0.95570 0.97042 1.70356 1.38256 1.06692 1.32554 0.86370 0.80177 0.77625 0.82317 1.19824 1.20985 1.19830 1.22701 0.80579 0.74213 0.84691 1.92956 1.70281 1.58715 1.96781 1.93423 1.79760 1.42809 1.95788 1.93025 1.74543 1.96393 1.56946 1.21245 1.01384 0.90599 0.96787 1.21078 0.91986 0.99591 1.04652 1.17480 0.90076 0.80542 1.06422 1.91411 1.80597 1.46406 1.94390 0.91323 0.91181 0.91730 0.85308 0.92302 0.83976 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.84 36.00 0.35 -1.03 15 2 C -0.13 -2.08 5.89 -104.56 -0.62 -2.69 15 3 C -0.09 -1.58 9.32 -39.59 -0.37 -1.95 15 4 C -0.06 -1.13 4.47 -104.62 -0.47 -1.60 15 5 C 0.05 1.12 2.16 -92.92 -0.20 0.92 15 6 H 0.07 1.75 7.87 -51.93 -0.41 1.34 15 7 C -0.53 -13.37 7.98 -34.44 -0.27 -13.65 15 8 H 0.07 1.83 7.60 -52.49 -0.40 1.43 15 9 C 0.06 1.59 5.20 -17.82 -0.09 1.49 15 10 N -0.84 -22.59 9.50 55.43 0.53 -22.06 15 11 Si 0.91 20.11 29.54 -169.99 -5.02 15.09 15 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 15 C 0.43 10.44 2.66 37.16 0.10 10.54 15 16 F -0.21 -4.84 14.43 2.25 0.03 -4.81 15 17 F -0.14 -3.62 12.91 2.25 0.03 -3.59 15 18 F -0.23 -5.19 17.02 2.25 0.04 -5.15 15 19 C -0.08 -1.59 8.36 -39.60 -0.33 -1.92 15 20 C -0.15 -2.63 10.03 -39.52 -0.40 -3.03 15 21 C 0.07 1.25 7.24 -39.42 -0.29 0.96 15 22 F -0.15 -2.41 16.48 2.25 0.04 -2.37 15 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.07 0.80 8.09 -51.93 -0.42 0.38 15 25 H 0.06 0.78 7.64 -51.93 -0.40 0.39 15 26 H 0.13 2.10 7.94 -52.49 -0.42 1.68 15 27 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 28 H 0.14 2.81 6.38 -52.49 -0.33 2.48 15 29 H 0.13 1.86 8.06 -52.48 -0.42 1.43 15 LS Contribution 264.37 15.07 3.98 3.98 Total: -1.00 -26.61 264.37 -5.31 -31.92 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -2.36 Total: -1.04 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.58 Total: -11.96 kcal Atomic # 7 Polarization: -22.59 SS G_CDS: 0.53 Total: -22.06 kcal Atomic # 9 Polarization: -16.06 SS G_CDS: 0.14 Total: -15.93 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.61 -5.31 -31.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260788898.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.280 kcal (2) G-P(sol) polarization free energy of solvation -26.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds