Wall clock time and date at job start Mon Mar 30 2020 06:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38220 * 120.01674 * 2 1 4 4 C 1.38223 * 120.02755 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.97283 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47465 * 359.97438 * 5 4 3 7 7 C 1.50705 * 109.47250 * 239.97688 * 5 4 3 8 8 H 1.08002 * 119.99212 * 0.02562 * 7 5 4 9 9 C 1.37879 * 120.00128 * 180.02562 * 7 5 4 10 10 N 1.31503 * 120.00030 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 119.99712 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47392 * 59.99945 * 11 9 7 13 13 H 1.48498 * 109.47007 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47117 * 299.99504 * 11 9 7 15 15 C 1.53001 * 109.47202 * 119.97861 * 5 4 3 16 16 F 1.39899 * 109.47191 * 59.99668 * 15 5 4 17 17 F 1.39901 * 109.47247 * 179.97438 * 15 5 4 18 18 F 1.39898 * 109.46886 * 299.99842 * 15 5 4 19 19 C 1.38265 * 120.04931 * 359.97438 * 4 3 2 20 20 C 1.38168 * 120.02977 * 359.97438 * 19 4 3 21 21 C 1.38440 * 120.01195 * 180.02562 * 2 1 3 22 22 F 1.35102 * 120.02757 * 0.24616 * 21 2 1 23 23 H 1.09001 * 109.46710 * 269.99878 * 1 2 3 24 24 H 1.09004 * 109.46977 * 29.99518 * 1 2 3 25 25 H 1.08998 * 109.47601 * 150.00108 * 1 2 3 26 26 H 1.08000 * 119.98716 * 0.02562 * 3 2 1 27 27 H 0.96998 * 120.00181 * 180.02562 * 10 9 7 28 28 H 1.08002 * 119.98423 * 179.97438 * 19 4 3 29 29 H 1.08007 * 120.01590 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3332 2.5026 0.0000 6 1 3.6244 3.3307 0.0004 7 6 5.1996 2.5837 -1.2304 8 1 5.2042 1.7711 -1.9419 9 6 5.9861 3.6950 -1.4479 10 7 5.9800 4.6846 -0.5818 11 14 7.0594 3.7956 -2.9735 12 1 6.2052 3.7179 -4.1857 13 1 7.8011 5.0821 -2.9729 14 1 8.0247 2.6672 -2.9749 15 6 5.2129 2.5837 1.2493 16 9 6.1227 1.5209 1.2488 17 9 5.9120 3.7955 1.2495 18 9 4.4087 2.5085 2.3915 19 6 4.2732 0.0004 -0.0005 20 6 3.5842 -1.1973 0.0005 21 6 2.1994 -1.1988 -0.0005 22 9 1.5247 -2.3693 -0.0061 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8901 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 1.6585 2.1322 0.0004 27 1 6.5330 5.4666 -0.7349 28 1 5.3532 0.0018 -0.0014 29 1 4.1255 -2.1319 0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260788898.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:20 Heat of formation + Delta-G solvation = -182.073709 kcal Electronic energy + Delta-G solvation = -20223.159098 eV Core-core repulsion = 16417.458838 eV Total energy + Delta-G solvation = -3805.700260 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.41434 -49.83611 -48.04413 -47.67100 -40.19416 -35.94009 -33.89184 -32.93981 -29.62783 -27.72494 -26.54366 -24.15627 -23.37459 -21.51627 -19.24071 -18.75547 -18.57072 -18.42917 -17.68725 -16.86784 -16.66605 -16.60332 -15.63350 -15.22221 -14.93226 -14.58263 -14.47480 -14.43087 -14.22998 -14.21004 -14.16951 -13.91944 -13.72568 -13.28574 -13.09986 -12.89033 -12.67667 -12.42595 -12.31514 -11.79899 -11.61053 -11.46787 -10.59189 -9.79130 -9.36407 -8.15433 -6.41616 0.22117 0.34047 1.45438 1.46579 1.54513 2.36245 2.47324 2.74408 2.99758 3.32957 3.64444 3.84776 3.87610 3.90735 3.97379 4.33784 4.40279 4.44669 4.73359 4.79866 4.85416 5.05884 5.11696 5.25168 5.30088 5.40505 5.63650 5.74630 5.89649 6.05209 6.61306 7.27199 8.75989 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.007449 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.163578 B = 3758.087770 C = 4162.131274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.079 4.079 5 C 0.050 3.950 6 H 0.058 0.942 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.018 3.982 10 N -0.872 5.872 11 Si 0.965 3.035 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.431 3.569 16 F -0.204 7.204 17 F -0.153 7.153 18 F -0.220 7.220 19 C -0.097 4.097 20 C -0.149 4.149 21 C 0.072 3.928 22 F -0.142 7.142 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.141 0.859 27 H 0.266 0.734 28 H 0.131 0.869 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.600 -7.063 0.791 9.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C -0.111 4.111 4 C -0.079 4.079 5 C 0.031 3.969 6 H 0.075 0.925 7 C -0.576 4.576 8 H 0.089 0.911 9 C -0.187 4.187 10 N -0.507 5.507 11 Si 0.790 3.210 12 H -0.190 1.190 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.376 3.624 16 F -0.185 7.185 17 F -0.134 7.134 18 F -0.202 7.202 19 C -0.115 4.115 20 C -0.167 4.167 21 C 0.053 3.947 22 F -0.120 7.120 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.159 0.841 27 H 0.076 0.924 28 H 0.149 0.851 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.533 -6.900 0.863 9.541 hybrid contribution 0.962 0.196 -0.289 1.023 sum -5.571 -6.704 0.575 8.736 Atomic orbital electron populations 1.20759 0.87996 1.04048 1.03625 1.20131 0.98442 0.91050 1.02485 1.20973 0.92699 0.98117 0.99360 1.20001 0.94335 0.94793 0.98807 1.18837 0.93810 0.93465 0.90818 0.92451 1.21002 1.25993 1.04539 1.06096 0.91072 1.25872 0.97965 0.95328 0.99500 1.70469 1.39066 1.07127 1.34049 0.85480 0.78650 0.77482 0.79397 1.19035 1.20787 1.19676 1.22755 0.80657 0.73673 0.85291 1.92952 1.70282 1.58491 1.96821 1.93387 1.80202 1.43881 1.95922 1.93024 1.74275 1.96334 1.56617 1.21156 1.00974 0.91190 0.98208 1.21258 0.92372 0.99714 1.03378 1.17591 0.90139 0.81028 1.05956 1.91434 1.80372 1.45967 1.94265 0.89772 0.89666 0.90778 0.84109 0.92443 0.85134 0.82945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.40 9.84 71.23 0.70 -1.70 15 2 C -0.12 -3.65 5.89 -19.82 -0.12 -3.76 15 3 C -0.09 -3.24 9.32 22.26 0.21 -3.04 15 4 C -0.08 -3.21 4.47 -19.86 -0.09 -3.30 15 5 C 0.05 2.39 2.16 -12.29 -0.03 2.36 15 6 H 0.06 2.85 7.87 -2.39 -0.02 2.83 15 7 C -0.54 -27.49 7.98 25.60 0.20 -27.28 15 8 H 0.07 3.57 7.60 -2.91 -0.02 3.55 15 9 C 0.02 0.91 5.20 84.66 0.44 1.35 15 10 N -0.87 -47.25 9.50 21.45 0.20 -47.05 15 11 Si 0.97 41.12 29.54 68.60 2.03 43.15 15 12 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 13 H -0.28 -11.85 7.11 99.48 0.71 -11.14 15 14 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 15 C 0.43 21.03 2.66 71.98 0.19 21.23 15 16 F -0.20 -9.69 14.43 44.97 0.65 -9.04 15 17 F -0.15 -8.23 12.91 44.97 0.58 -7.65 15 18 F -0.22 -10.12 17.02 44.97 0.77 -9.35 15 19 C -0.10 -3.70 8.36 22.26 0.19 -3.52 15 20 C -0.15 -4.80 10.03 22.31 0.22 -4.57 15 21 C 0.07 2.25 7.24 22.38 0.16 2.41 15 22 F -0.14 -4.13 16.48 44.97 0.74 -3.39 15 23 H 0.08 1.66 8.14 -2.39 -0.02 1.64 15 24 H 0.08 1.66 8.09 -2.38 -0.02 1.64 15 25 H 0.07 1.53 7.64 -2.39 -0.02 1.51 15 26 H 0.14 4.42 7.94 -2.91 -0.02 4.40 15 27 H 0.27 13.78 8.31 -92.71 -0.77 13.01 15 28 H 0.13 5.20 6.38 -2.91 -0.02 5.18 15 29 H 0.15 4.05 8.06 -2.91 -0.02 4.03 15 Total: -1.00 -55.67 264.37 8.24 -47.43 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.19 Total: 5.72 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 2.08 Total: -19.82 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.20 Total: -47.05 kcal Atomic # 9 Polarization: -32.17 SS G_CDS: 2.74 Total: -29.43 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -55.67 8.24 -47.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260788898.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.643 kcal (2) G-P(sol) polarization free energy of solvation -55.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds