Wall clock time and date at job start Mon Mar 30 2020 06:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99851 * 2 1 4 4 H 1.48501 * 109.47127 * 240.00304 * 3 2 1 5 5 H 1.48500 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47134 * 119.99859 * 3 2 1 7 7 C 1.37876 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99818 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99678 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47059 * 185.34546 * 10 9 7 12 12 C 1.38265 * 119.98905 * 270.54594 * 11 10 9 13 13 C 1.38215 * 120.05253 * 180.02562 * 12 11 10 14 14 C 1.38220 * 120.02956 * 359.97438 * 13 12 11 15 15 C 1.38441 * 119.96713 * 0.02562 * 14 13 12 16 16 F 1.35102 * 120.02105 * 180.02562 * 15 14 13 17 17 C 1.38178 * 119.98754 * 90.54679 * 11 10 9 18 18 C 1.50700 * 120.00911 * 0.02562 * 17 11 10 19 19 F 1.39908 * 109.46925 * 202.79902 * 18 17 11 20 20 F 1.39902 * 109.47277 * 322.79793 * 18 17 11 21 21 F 1.39895 * 109.47301 * 82.79904 * 18 17 11 22 22 H 0.97005 * 120.00232 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47390 * 59.99948 * 9 7 2 24 24 H 1.09002 * 109.47393 * 299.99590 * 9 7 2 25 25 H 1.09005 * 109.47255 * 65.35069 * 10 9 7 26 26 H 1.09001 * 109.47316 * 305.34338 * 10 9 7 27 27 H 1.08003 * 119.97396 * 0.27838 * 12 11 10 28 28 H 1.08008 * 119.98691 * 179.97438 * 13 12 11 29 29 H 1.07993 * 120.01708 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6619 0.0005 11 6 1.4965 -4.9631 -0.1318 12 6 1.0585 -5.6265 0.9994 13 6 0.3721 -6.8202 0.8795 14 6 0.1223 -7.3519 -0.3716 15 6 0.5604 -6.6884 -1.5050 16 9 0.3164 -7.2069 -2.7285 17 6 1.2480 -5.4926 -1.3837 18 6 1.7261 -4.7695 -2.6164 19 9 0.9570 -5.1644 -3.7164 20 9 1.5957 -3.3895 -2.4276 21 9 3.0693 -5.0834 -2.8497 22 1 -0.4851 0.8401 0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8073 -3.6596 0.9346 26 1 2.9333 -3.5518 -0.8377 27 1 1.2493 -5.2097 1.9773 28 1 0.0308 -7.3378 1.7639 29 1 -0.4137 -8.2848 -0.4650 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260828635.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:18 Heat of formation + Delta-G solvation = -179.057210 kcal Electronic energy + Delta-G solvation = -20148.845046 eV Core-core repulsion = 16343.275591 eV Total energy + Delta-G solvation = -3805.569455 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.82236 -48.90632 -47.24213 -47.12439 -39.24628 -34.23185 -32.39645 -31.38332 -29.20555 -25.96282 -24.98562 -22.44290 -22.10350 -20.41126 -18.16102 -18.13953 -17.89805 -16.92205 -16.23620 -16.19154 -15.61846 -15.08931 -14.50639 -14.33860 -13.93493 -13.73084 -13.60170 -13.53432 -13.26765 -13.24190 -12.74582 -12.55548 -12.15613 -12.02309 -11.63680 -11.27680 -10.95072 -10.84266 -10.59339 -9.91495 -9.74917 -9.17255 -9.07370 -8.50844 -8.34016 -6.00475 -4.02896 0.90187 1.19662 3.01977 3.33893 3.38358 3.40396 3.45677 4.01651 4.07756 4.38484 4.45912 4.78136 4.80225 4.98222 5.20988 5.28017 5.35872 5.64446 5.85986 5.93486 6.05423 6.27560 6.43316 6.57717 6.72641 6.91361 7.62672 7.74720 7.97612 8.37059 9.02149 9.60554 11.10726 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.026331 B = 0.006738 C = 0.005942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.117986 B = 4154.648409 C = 4711.182471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.096 4.096 11 C 0.021 3.979 12 C -0.135 4.135 13 C -0.059 4.059 14 C -0.177 4.177 15 C 0.146 3.854 16 F -0.128 7.128 17 C -0.226 4.226 18 C 0.505 3.495 19 F -0.180 7.180 20 F -0.142 7.142 21 F -0.182 7.182 22 H 0.261 0.739 23 H 0.033 0.967 24 H 0.017 0.983 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 -14.359 -0.223 14.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.133 4.133 11 C 0.021 3.979 12 C -0.153 4.153 13 C -0.077 4.077 14 C -0.196 4.196 15 C 0.126 3.874 16 F -0.106 7.106 17 C -0.228 4.228 18 C 0.450 3.550 19 F -0.162 7.162 20 F -0.123 7.123 21 F -0.163 7.163 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.036 0.964 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.158 0.842 28 H 0.156 0.844 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.069 -14.231 -0.317 14.275 hybrid contribution 0.381 0.927 -0.455 1.101 sum 1.450 -13.304 -0.772 13.405 Atomic orbital electron populations 1.69951 1.06036 1.26762 1.50554 1.24982 0.94823 0.99161 0.95251 0.86659 0.79589 0.83125 0.78643 1.20184 1.21306 1.20244 1.21106 0.92948 0.90666 1.50991 0.92631 1.19241 0.93515 0.89902 0.98166 1.21247 0.99075 0.90474 1.02551 1.20177 0.92156 0.95443 0.90146 1.21189 0.99852 0.95304 0.98923 1.21182 0.94867 0.94882 0.96797 1.21003 1.05158 1.02243 0.91185 1.17314 0.97339 0.91862 0.80839 1.91551 1.92116 1.86047 1.40924 1.20018 1.10171 0.98162 0.94478 1.18187 0.75127 0.78868 0.82787 1.93192 1.75359 1.90834 1.56775 1.93426 1.95162 1.29139 1.94548 1.93182 1.35021 1.92932 1.95168 0.92908 0.94896 0.96436 0.90968 0.91174 0.84166 0.84445 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.92 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 15 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 15 9 C 0.03 0.72 4.33 -27.89 -0.12 0.60 15 10 C -0.10 -1.92 4.50 -27.88 -0.13 -2.05 15 11 C 0.02 0.36 5.10 -104.63 -0.53 -0.17 15 12 C -0.13 -1.89 9.70 -39.58 -0.38 -2.27 15 13 C -0.06 -0.68 10.04 -39.60 -0.40 -1.08 15 14 C -0.18 -2.16 10.03 -39.51 -0.40 -2.56 15 15 C 0.15 2.24 7.16 -39.42 -0.28 1.95 15 16 F -0.13 -2.00 15.19 2.25 0.03 -1.96 15 17 C -0.23 -3.93 5.45 -104.56 -0.57 -4.50 15 18 C 0.50 9.40 2.78 36.01 0.10 9.50 15 19 F -0.18 -3.29 15.19 2.25 0.03 -3.26 15 20 F -0.14 -3.06 12.05 2.25 0.03 -3.04 15 21 F -0.18 -3.24 17.04 2.25 0.04 -3.20 15 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 23 H 0.03 0.89 6.15 -51.93 -0.32 0.57 15 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 15 25 H 0.07 1.32 8.09 -51.93 -0.42 0.90 15 26 H 0.07 1.43 6.05 -51.93 -0.31 1.12 15 27 H 0.14 1.73 8.06 -52.48 -0.42 1.31 15 28 H 0.14 1.08 8.06 -52.48 -0.42 0.65 15 29 H 0.14 1.30 8.06 -52.49 -0.42 0.87 15 LS Contribution 265.93 15.07 4.01 4.01 Total: -1.00 -30.18 265.93 -5.55 -35.73 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: -2.29 Total: -5.22 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -3.12 Total: -13.68 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 9 Polarization: -11.59 SS G_CDS: 0.13 Total: -11.46 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.18 -5.55 -35.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828635.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.327 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds