Wall clock time and date at job start Mon Mar 30 2020 06:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99851 * 2 1 4 4 H 1.48501 * 109.47127 * 240.00304 * 3 2 1 5 5 H 1.48500 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47134 * 119.99859 * 3 2 1 7 7 C 1.37876 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99818 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99678 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47059 * 185.34546 * 10 9 7 12 12 C 1.38265 * 119.98905 * 270.54594 * 11 10 9 13 13 C 1.38215 * 120.05253 * 180.02562 * 12 11 10 14 14 C 1.38220 * 120.02956 * 359.97438 * 13 12 11 15 15 C 1.38441 * 119.96713 * 0.02562 * 14 13 12 16 16 F 1.35102 * 120.02105 * 180.02562 * 15 14 13 17 17 C 1.38178 * 119.98754 * 90.54679 * 11 10 9 18 18 C 1.50700 * 120.00911 * 0.02562 * 17 11 10 19 19 F 1.39908 * 109.46925 * 202.79902 * 18 17 11 20 20 F 1.39902 * 109.47277 * 322.79793 * 18 17 11 21 21 F 1.39895 * 109.47301 * 82.79904 * 18 17 11 22 22 H 0.97005 * 120.00232 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47390 * 59.99948 * 9 7 2 24 24 H 1.09002 * 109.47393 * 299.99590 * 9 7 2 25 25 H 1.09005 * 109.47255 * 65.35069 * 10 9 7 26 26 H 1.09001 * 109.47316 * 305.34338 * 10 9 7 27 27 H 1.08003 * 119.97396 * 0.27838 * 12 11 10 28 28 H 1.08008 * 119.98691 * 179.97438 * 13 12 11 29 29 H 1.07993 * 120.01708 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6619 0.0005 11 6 1.4965 -4.9631 -0.1318 12 6 1.0585 -5.6265 0.9994 13 6 0.3721 -6.8202 0.8795 14 6 0.1223 -7.3519 -0.3716 15 6 0.5604 -6.6884 -1.5050 16 9 0.3164 -7.2069 -2.7285 17 6 1.2480 -5.4926 -1.3837 18 6 1.7261 -4.7695 -2.6164 19 9 0.9570 -5.1644 -3.7164 20 9 1.5957 -3.3895 -2.4276 21 9 3.0693 -5.0834 -2.8497 22 1 -0.4851 0.8401 0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8073 -3.6596 0.9346 26 1 2.9333 -3.5518 -0.8377 27 1 1.2493 -5.2097 1.9773 28 1 0.0308 -7.3378 1.7639 29 1 -0.4137 -8.2848 -0.4650 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260828635.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:18 Heat of formation + Delta-G solvation = -195.298646 kcal Electronic energy + Delta-G solvation = -20149.549328 eV Core-core repulsion = 16343.275591 eV Total energy + Delta-G solvation = -3806.273736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.29931 -50.10460 -48.71000 -48.67985 -40.40619 -35.96752 -34.11344 -32.68632 -30.75174 -27.52607 -26.55092 -24.04533 -23.36140 -21.95584 -19.63046 -19.54728 -19.31951 -18.51696 -17.90471 -17.43854 -16.81155 -16.51370 -16.14762 -15.86388 -15.45008 -15.21688 -15.08402 -15.00638 -14.76977 -14.55823 -14.35406 -13.91123 -13.67521 -13.60869 -13.10236 -12.83001 -12.70471 -12.53239 -12.14327 -11.74831 -11.57991 -11.19337 -10.50848 -10.25119 -9.71818 -8.17116 -6.26727 -0.23154 0.08163 1.40732 1.43565 1.50981 1.61924 2.34897 2.43492 2.62588 2.87578 3.07982 3.16904 3.34314 3.66348 3.87925 4.13229 4.22795 4.43941 4.54564 4.75610 4.85378 4.94913 5.11546 5.20402 5.32972 5.52206 5.73590 5.75121 5.87230 6.25220 6.88384 7.41123 8.94343 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.026331 B = 0.006738 C = 0.005942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.117986 B = 4154.648409 C = 4711.182471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.036 3.964 10 C -0.083 4.083 11 C -0.007 4.007 12 C -0.134 4.134 13 C -0.039 4.039 14 C -0.157 4.157 15 C 0.128 3.872 16 F -0.134 7.134 17 C -0.245 4.245 18 C 0.499 3.501 19 F -0.181 7.181 20 F -0.166 7.166 21 F -0.180 7.180 22 H 0.262 0.738 23 H 0.005 0.995 24 H -0.002 1.002 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.157 0.843 28 H 0.188 0.812 29 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.277 -15.952 1.230 16.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.077 0.923 9 C -0.001 4.001 10 C -0.120 4.120 11 C -0.008 4.008 12 C -0.152 4.152 13 C -0.057 4.057 14 C -0.175 4.175 15 C 0.109 3.891 16 F -0.112 7.112 17 C -0.247 4.247 18 C 0.445 3.555 19 F -0.163 7.163 20 F -0.147 7.147 21 F -0.162 7.162 22 H 0.071 0.929 23 H 0.023 0.977 24 H 0.016 0.984 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.175 0.825 28 H 0.205 0.795 29 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.141 -15.837 1.136 15.919 hybrid contribution 0.331 1.321 -0.912 1.639 sum 1.472 -14.516 0.224 14.592 Atomic orbital electron populations 1.70084 1.07670 1.27668 1.51775 1.25879 0.95681 1.03008 0.94891 0.85593 0.78359 0.78541 0.79121 1.19746 1.20947 1.18797 1.21577 0.93399 0.92151 1.50347 0.92320 1.19031 0.93882 0.91446 0.95723 1.20899 0.97940 0.90517 1.02664 1.19972 0.94205 0.95124 0.91451 1.21494 0.99287 0.96047 0.98390 1.21713 0.92372 0.93354 0.98234 1.21526 1.03159 1.02756 0.90090 1.17597 0.98051 0.91743 0.81749 1.91533 1.92204 1.85965 1.41538 1.20017 1.11822 0.99330 0.93537 1.18495 0.75296 0.77991 0.83708 1.93176 1.75379 1.90685 1.57024 1.93369 1.95321 1.31289 1.94749 1.93171 1.34970 1.92771 1.95255 0.92880 0.97719 0.98362 0.89609 0.92495 0.82550 0.79484 0.80340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.29 21.45 0.28 -56.56 15 2 C 0.00 0.18 5.46 84.65 0.46 0.65 15 3 Si 0.96 44.58 29.54 68.60 2.03 46.60 15 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 15 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 15 6 H -0.26 -11.58 7.11 99.48 0.71 -10.87 15 7 C -0.54 -30.42 9.11 25.60 0.23 -30.18 15 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 15 9 C 0.04 1.88 4.33 29.85 0.13 2.00 15 10 C -0.08 -3.38 4.50 29.85 0.13 -3.24 15 11 C -0.01 -0.24 5.10 -19.87 -0.10 -0.35 15 12 C -0.13 -3.40 9.70 22.27 0.22 -3.19 15 13 C -0.04 -0.71 10.04 22.26 0.22 -0.48 15 14 C -0.16 -3.17 10.03 22.31 0.22 -2.94 15 15 C 0.13 3.71 7.16 22.37 0.16 3.87 15 16 F -0.13 -4.03 15.19 44.97 0.68 -3.34 15 17 C -0.24 -8.49 5.45 -19.82 -0.11 -8.60 15 18 C 0.50 19.23 2.78 71.24 0.20 19.43 15 19 F -0.18 -6.81 15.19 44.97 0.68 -6.13 15 20 F -0.17 -7.58 12.05 44.97 0.54 -7.04 15 21 F -0.18 -6.62 17.04 44.97 0.77 -5.86 15 22 H 0.26 15.13 8.31 -92.70 -0.77 14.36 15 23 H 0.00 0.26 6.15 -2.39 -0.01 0.25 15 24 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 15 25 H 0.09 3.14 8.09 -2.38 -0.02 3.13 15 26 H 0.06 2.41 6.05 -2.39 -0.01 2.40 15 27 H 0.16 3.40 8.06 -2.91 -0.02 3.37 15 28 H 0.19 1.61 8.06 -2.91 -0.02 1.58 15 29 H 0.18 2.26 8.06 -2.91 -0.02 2.23 15 Total: -1.00 -67.73 265.93 7.95 -59.78 By element: Atomic # 1 Polarization: -5.61 SS G_CDS: 1.19 Total: -4.42 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 1.77 Total: -23.03 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.28 Total: -56.56 kcal Atomic # 9 Polarization: -25.05 SS G_CDS: 2.67 Total: -22.37 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -67.73 7.95 -59.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828635.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.518 kcal (2) G-P(sol) polarization free energy of solvation -67.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds