Wall clock time and date at job start Mon Mar 30 2020 06:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00317 * 2 1 4 4 H 1.48501 * 109.47518 * 270.00174 * 3 2 1 5 5 H 1.48504 * 109.47174 * 30.00398 * 3 2 1 6 6 H 1.48498 * 109.47521 * 150.00261 * 3 2 1 7 7 C 1.37875 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00477 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47316 * 179.97438 * 9 7 2 11 11 N 1.34826 * 126.19831 * 265.02987 * 10 9 7 12 12 H 0.97003 * 125.88999 * 359.96929 * 11 10 9 13 13 N 1.40013 * 108.21577 * 179.76700 * 11 10 9 14 14 C 1.30670 * 108.52275 * 0.35755 * 13 11 10 15 15 C 1.36430 * 126.19647 * 84.99785 * 10 9 7 16 16 C 1.48482 * 126.22138 * 0.02564 * 15 10 9 17 17 C 1.39326 * 120.11065 * 309.74757 * 16 15 10 18 18 C 1.38006 * 119.90971 * 179.72163 * 17 16 15 19 19 C 1.38322 * 120.13116 * 0.55178 * 18 17 16 20 20 C 1.38408 * 120.22142 * 359.72564 * 19 18 17 21 21 Cl 1.73594 * 119.95512 * 180.02562 * 20 19 18 22 22 C 1.38172 * 120.08990 * 359.97438 * 20 19 18 23 23 H 0.97004 * 119.99666 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46868 * 60.00389 * 9 7 2 25 25 H 1.08999 * 109.47099 * 300.00012 * 9 7 2 26 26 H 1.08002 * 125.95363 * 179.91545 * 14 13 11 27 27 H 1.08011 * 120.04536 * 359.97370 * 17 16 15 28 28 H 1.08007 * 119.93526 * 180.25450 * 18 17 16 29 29 H 1.07993 * 119.88821 * 179.70213 * 19 18 17 30 30 H 1.08001 * 120.06696 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0018 11 7 2.6751 -4.3106 -1.0864 12 1 2.4195 -4.1357 -2.0056 13 7 3.5734 -5.2952 -0.6573 14 6 3.6650 -5.2346 0.6447 15 6 2.8276 -4.1951 1.0943 16 6 2.6306 -3.7750 2.5047 17 6 2.7462 -2.4319 2.8566 18 6 2.5567 -2.0452 4.1677 19 6 2.2635 -2.9898 5.1348 20 6 2.1531 -4.3263 4.7923 21 17 1.7843 -5.5058 6.0114 22 6 2.3350 -4.7228 3.4813 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8897 26 1 4.2795 -5.8680 1.2673 27 1 2.9798 -1.6937 2.1035 28 1 2.6421 -1.0036 4.4402 29 1 2.1207 -2.6835 6.1604 30 1 2.2491 -5.7658 3.2145 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260911814.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:33 Heat of formation + Delta-G solvation = 71.484884 kcal Electronic energy + Delta-G solvation = -16685.133525 eV Core-core repulsion = 13892.914258 eV Total energy + Delta-G solvation = -2792.219268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.66528 -38.50771 -36.15866 -33.68026 -32.03611 -31.34837 -30.23241 -28.82200 -26.95639 -23.46133 -22.33556 -22.07591 -20.93218 -19.09929 -16.88482 -16.62737 -16.01626 -14.99415 -14.83021 -14.56580 -13.91865 -13.66695 -13.30479 -13.16179 -12.97585 -12.50552 -12.16459 -11.72572 -11.30452 -11.16696 -10.92520 -10.90992 -10.69682 -10.58970 -10.19151 -9.94438 -9.73491 -9.00952 -8.66806 -8.62973 -8.31189 -7.45252 -6.25332 -4.31089 1.59661 1.70277 2.40639 2.58502 3.17973 3.25786 3.27053 3.34410 3.47703 4.20175 4.27872 5.09251 5.13755 5.27155 5.39178 5.68014 5.73098 5.82800 5.90000 6.14929 6.20376 6.35809 6.50255 6.58960 6.90687 7.08120 7.21053 7.22571 7.29759 7.39786 7.68012 7.84865 8.05211 8.25973 8.71870 9.33462 10.83955 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.007167 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.407690 B = 3906.015699 C = 5108.374363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.069 3.931 10 C 0.169 3.831 11 N -0.477 5.477 12 H 0.436 0.564 13 N -0.323 5.323 14 C 0.066 3.934 15 C -0.243 4.243 16 C 0.032 3.968 17 C -0.088 4.088 18 C -0.109 4.109 19 C -0.126 4.126 20 C -0.040 4.040 21 Cl -0.092 7.092 22 C -0.112 4.112 23 H 0.266 0.734 24 H 0.032 0.968 25 H 0.052 0.948 26 H 0.175 0.825 27 H 0.153 0.847 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.846 -6.183 6.811 9.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.557 4.557 8 H 0.079 0.921 9 C 0.030 3.970 10 C 0.039 3.961 11 N -0.183 5.183 12 H 0.280 0.720 13 N -0.144 5.144 14 C -0.121 4.121 15 C -0.254 4.254 16 C 0.030 3.970 17 C -0.106 4.106 18 C -0.127 4.127 19 C -0.144 4.144 20 C -0.066 4.066 21 Cl -0.063 7.063 22 C -0.131 4.131 23 H 0.075 0.925 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.192 0.808 27 H 0.171 0.829 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.070 -6.809 5.866 9.866 hybrid contribution -0.080 1.308 0.366 1.360 sum 3.990 -5.502 6.232 9.221 Atomic orbital electron populations 1.69936 1.06060 1.27305 1.48940 1.24954 0.94844 0.99238 0.94660 0.86555 0.79947 0.83022 0.78406 1.20518 1.20937 1.19499 1.20849 0.92983 0.89193 1.52678 0.92067 1.18162 0.91590 0.87691 0.99565 1.22258 0.95172 0.92936 0.85777 1.46182 1.35795 1.27397 1.08949 0.72014 1.77043 1.12792 1.11511 1.13065 1.23748 0.98787 0.97525 0.92045 1.18362 1.09960 1.04839 0.92212 1.17900 0.96499 0.92310 0.90297 1.21987 0.95799 0.96310 0.96504 1.21062 0.99712 0.99079 0.92896 1.20939 1.02432 0.91028 1.00045 1.20673 1.06399 0.89920 0.89600 1.98326 1.93432 1.58751 1.55803 1.21003 1.01516 1.00050 0.90501 0.92464 0.95011 0.93042 0.80768 0.82926 0.85528 0.85892 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.85 13.29 55.43 0.74 -23.12 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.52 -12.76 6.98 -34.44 -0.24 -13.00 16 8 H 0.06 1.51 7.49 -52.48 -0.39 1.12 16 9 C 0.07 1.58 4.80 -29.03 -0.14 1.44 16 10 C 0.17 3.43 6.41 -81.93 -0.53 2.90 16 11 N -0.48 -8.77 7.33 33.65 0.25 -8.53 16 12 H 0.44 6.92 8.96 -182.66 -1.64 5.28 16 13 N -0.32 -5.92 12.67 30.80 0.39 -5.53 16 14 C 0.07 1.14 11.94 -17.06 -0.20 0.93 16 15 C -0.24 -4.60 5.58 -105.34 -0.59 -5.19 16 16 C 0.03 0.57 5.50 -104.89 -0.58 -0.01 16 17 C -0.09 -1.63 9.06 -39.26 -0.36 -1.98 16 18 C -0.11 -1.76 10.03 -39.64 -0.40 -2.15 16 19 C -0.13 -1.87 9.82 -39.49 -0.39 -2.26 16 20 C -0.04 -0.60 6.31 -39.54 -0.25 -0.85 16 21 Cl -0.09 -1.24 28.95 -51.86 -1.50 -2.74 16 22 C -0.11 -1.80 9.50 -39.23 -0.37 -2.18 16 23 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.05 1.28 8.03 -51.93 -0.42 0.86 16 26 H 0.18 2.40 8.06 -52.49 -0.42 1.98 16 27 H 0.15 3.13 5.60 -52.48 -0.29 2.84 16 28 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 283.26 15.07 4.27 4.27 Total: -1.00 -26.95 283.26 -9.00 -35.95 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -3.99 Total: 5.73 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -4.13 Total: -20.75 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 1.37 Total: -37.17 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.74 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.95 -9.00 -35.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911814.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.439 kcal (2) G-P(sol) polarization free energy of solvation -26.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds