Wall clock time and date at job start Mon Mar 30 2020 06:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00317 * 2 1 4 4 H 1.48501 * 109.47518 * 270.00174 * 3 2 1 5 5 H 1.48504 * 109.47174 * 30.00398 * 3 2 1 6 6 H 1.48498 * 109.47521 * 150.00261 * 3 2 1 7 7 C 1.37875 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00477 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47316 * 179.97438 * 9 7 2 11 11 N 1.34826 * 126.19831 * 265.02987 * 10 9 7 12 12 H 0.97003 * 125.88999 * 359.96929 * 11 10 9 13 13 N 1.40013 * 108.21577 * 179.76700 * 11 10 9 14 14 C 1.30670 * 108.52275 * 0.35755 * 13 11 10 15 15 C 1.36430 * 126.19647 * 84.99785 * 10 9 7 16 16 C 1.48482 * 126.22138 * 0.02564 * 15 10 9 17 17 C 1.39326 * 120.11065 * 309.74757 * 16 15 10 18 18 C 1.38006 * 119.90971 * 179.72163 * 17 16 15 19 19 C 1.38322 * 120.13116 * 0.55178 * 18 17 16 20 20 C 1.38408 * 120.22142 * 359.72564 * 19 18 17 21 21 Cl 1.73594 * 119.95512 * 180.02562 * 20 19 18 22 22 C 1.38172 * 120.08990 * 359.97438 * 20 19 18 23 23 H 0.97004 * 119.99666 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46868 * 60.00389 * 9 7 2 25 25 H 1.08999 * 109.47099 * 300.00012 * 9 7 2 26 26 H 1.08002 * 125.95363 * 179.91545 * 14 13 11 27 27 H 1.08011 * 120.04536 * 359.97370 * 17 16 15 28 28 H 1.08007 * 119.93526 * 180.25450 * 18 17 16 29 29 H 1.07993 * 119.88821 * 179.70213 * 19 18 17 30 30 H 1.08001 * 120.06696 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0018 11 7 2.6751 -4.3106 -1.0864 12 1 2.4195 -4.1357 -2.0056 13 7 3.5734 -5.2952 -0.6573 14 6 3.6650 -5.2346 0.6447 15 6 2.8276 -4.1951 1.0943 16 6 2.6306 -3.7750 2.5047 17 6 2.7462 -2.4319 2.8566 18 6 2.5567 -2.0452 4.1677 19 6 2.2635 -2.9898 5.1348 20 6 2.1531 -4.3263 4.7923 21 17 1.7843 -5.5058 6.0114 22 6 2.3350 -4.7228 3.4813 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8897 26 1 4.2795 -5.8680 1.2673 27 1 2.9798 -1.6937 2.1035 28 1 2.6421 -1.0036 4.4402 29 1 2.1207 -2.6835 6.1604 30 1 2.2491 -5.7658 3.2145 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260911814.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:32 Heat of formation + Delta-G solvation = 57.860649 kcal Electronic energy + Delta-G solvation = -16685.724317 eV Core-core repulsion = 13892.914258 eV Total energy + Delta-G solvation = -2792.810059 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.12560 -39.78130 -37.31469 -35.54687 -33.40794 -33.01681 -31.51337 -30.34478 -28.59143 -25.28140 -23.64470 -23.45838 -22.33408 -20.53831 -18.60413 -18.28749 -17.37856 -16.50999 -16.28331 -16.04221 -15.41136 -15.06582 -14.60069 -14.50491 -14.31421 -14.20335 -13.89005 -13.43124 -12.77593 -12.63169 -12.49008 -12.36463 -12.11340 -11.89743 -11.78942 -11.61716 -11.48767 -10.60235 -10.44400 -10.06429 -9.58646 -8.89697 -8.20787 -6.32253 0.29168 0.42367 1.08257 1.22591 1.41867 1.45088 1.53982 1.90565 2.04998 2.41855 2.89334 3.12449 3.82737 4.05578 4.11055 4.24252 4.38561 4.51623 4.57782 4.64114 4.85729 5.00513 5.11129 5.27608 5.33484 5.52099 5.59146 5.69371 5.72690 5.87615 6.04396 6.05840 6.45655 6.75325 6.81221 7.35406 8.88243 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.007167 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.407690 B = 3906.015699 C = 5108.374363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.021 3.979 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.084 3.916 10 C 0.143 3.857 11 N -0.475 5.475 12 H 0.444 0.556 13 N -0.326 5.326 14 C 0.071 3.929 15 C -0.241 4.241 16 C 0.013 3.987 17 C -0.110 4.110 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.042 4.042 21 Cl -0.071 7.071 22 C -0.110 4.110 23 H 0.266 0.734 24 H 0.015 0.985 25 H 0.027 0.973 26 H 0.212 0.788 27 H 0.126 0.874 28 H 0.143 0.857 29 H 0.151 0.849 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 -6.778 8.249 11.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.179 4.179 3 Si 0.777 3.223 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.045 3.955 10 C 0.013 3.987 11 N -0.182 5.182 12 H 0.289 0.711 13 N -0.147 5.147 14 C -0.116 4.116 15 C -0.252 4.252 16 C 0.011 3.989 17 C -0.129 4.129 18 C -0.130 4.130 19 C -0.137 4.137 20 C -0.068 4.068 21 Cl -0.042 7.042 22 C -0.129 4.129 23 H 0.075 0.925 24 H 0.033 0.967 25 H 0.045 0.955 26 H 0.228 0.772 27 H 0.144 0.856 28 H 0.161 0.839 29 H 0.169 0.831 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.107 -7.412 7.293 11.585 hybrid contribution -0.396 1.401 0.005 1.456 sum 4.711 -6.011 7.299 10.564 Atomic orbital electron populations 1.70043 1.07464 1.28015 1.50478 1.25663 0.95455 1.02294 0.94458 0.85634 0.78992 0.79293 0.78370 1.20300 1.20752 1.18702 1.21007 0.92754 0.90051 1.51528 0.92526 1.17779 0.91634 0.88651 0.97456 1.21875 0.96178 0.93435 0.87226 1.46180 1.35757 1.27216 1.09042 0.71117 1.77033 1.12607 1.11298 1.13794 1.24282 0.98304 0.97160 0.91816 1.18618 1.09412 1.04757 0.92437 1.17951 0.97924 0.92646 0.90350 1.21848 0.97762 0.96131 0.97140 1.21253 0.99250 1.00366 0.92168 1.21226 1.00831 0.90606 1.01018 1.20803 1.05532 0.90651 0.89839 1.98336 1.93207 1.57946 1.54737 1.21097 1.00922 1.00309 0.90523 0.92478 0.96719 0.95513 0.77182 0.85618 0.83906 0.83145 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.79 13.29 21.45 0.28 -50.50 16 2 C 0.02 1.09 5.46 84.65 0.46 1.56 16 3 Si 0.95 40.72 29.54 68.60 2.03 42.74 16 4 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.52 -25.96 6.98 25.60 0.18 -25.78 16 8 H 0.06 2.86 7.49 -2.91 -0.02 2.84 16 9 C 0.08 4.00 4.80 29.10 0.14 4.14 16 10 C 0.14 5.90 6.41 41.68 0.27 6.17 16 11 N -0.47 -17.41 7.33 -47.44 -0.35 -17.76 16 12 H 0.44 14.19 8.96 -213.37 -1.91 12.27 16 13 N -0.33 -11.52 12.67 -56.46 -0.72 -12.24 16 14 C 0.07 2.33 11.94 85.50 1.02 3.35 16 15 C -0.24 -9.05 5.58 -20.33 -0.11 -9.16 16 16 C 0.01 0.46 5.50 -20.04 -0.11 0.35 16 17 C -0.11 -4.10 9.06 22.48 0.20 -3.90 16 18 C -0.11 -3.48 10.03 22.23 0.22 -3.26 16 19 C -0.12 -3.23 9.82 22.33 0.22 -3.01 16 20 C -0.04 -1.18 6.31 22.29 0.14 -1.04 16 21 Cl -0.07 -1.71 28.95 -2.72 -0.08 -1.79 16 22 C -0.11 -3.35 9.50 22.50 0.21 -3.14 16 23 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 24 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.03 1.40 8.03 -2.39 -0.02 1.38 16 26 H 0.21 5.12 8.06 -2.91 -0.02 5.10 16 27 H 0.13 5.32 5.60 -2.91 -0.02 5.30 16 28 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 29 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -57.28 283.26 3.28 -54.00 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -0.73 Total: 19.27 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 2.85 Total: -33.72 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -0.78 Total: -80.50 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -57.28 3.28 -54.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911814.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.857 kcal (2) G-P(sol) polarization free energy of solvation -57.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds