Wall clock time and date at job start Mon Mar 30 2020 06:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38137 * 120.03592 * 2 1 4 4 C 1.38268 * 120.06944 * 180.02562 * 3 2 1 5 5 C 1.38311 * 120.14056 * 359.97438 * 4 3 2 6 6 C 1.38091 * 120.06869 * 359.97438 * 5 4 3 7 7 C 1.38855 * 120.03645 * 179.72296 * 2 1 3 8 8 N 1.40074 * 120.06698 * 359.97438 * 7 2 1 9 9 N 1.39874 * 125.69057 * 48.32387 * 8 7 2 10 10 C 1.30309 * 109.30860 * 179.97438 * 9 8 7 11 11 C 1.41962 * 108.10975 * 0.02562 * 10 9 8 12 12 C 1.41465 * 126.56852 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99478 * 179.97438 * 12 11 10 14 14 C 1.39685 * 120.00107 * 359.97438 * 12 11 10 15 15 N 1.31050 * 120.00239 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99861 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47278 * 89.99842 * 16 14 12 18 18 H 1.48506 * 109.46937 * 209.99587 * 16 14 12 19 19 H 1.48500 * 109.47019 * 329.99407 * 16 14 12 20 20 C 1.34835 * 125.68949 * 228.01450 * 8 7 2 21 21 Cl 1.73600 * 126.44874 * 0.02562 * 20 8 7 22 22 H 1.09005 * 109.46590 * 85.63933 * 1 2 3 23 23 H 1.08999 * 109.47097 * 325.64243 * 1 2 3 24 24 H 1.08996 * 109.47288 * 205.63398 * 1 2 3 25 25 H 1.07997 * 119.96048 * 0.02562 * 3 2 1 26 26 H 1.07999 * 119.92622 * 180.02562 * 4 3 2 27 27 H 1.07998 * 119.96138 * 180.02562 * 5 4 3 28 28 H 1.07999 * 120.03199 * 179.97438 * 6 5 4 29 29 H 1.07999 * 125.93942 * 179.97438 * 10 9 8 30 30 H 0.96997 * 120.00023 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5811 1.1967 -0.0005 5 6 4.2763 0.0010 -0.0005 6 6 3.5909 -1.1978 0.0005 7 6 2.2020 -1.2021 0.0058 8 7 1.5038 -2.4164 0.0122 9 7 0.4419 -2.7516 -0.8342 10 6 0.0311 -3.9560 -0.5538 11 6 0.8280 -4.4580 0.5084 12 6 0.7160 -5.7297 1.1179 13 1 1.3822 -6.0032 1.9228 14 6 -0.2562 -6.6315 0.6788 15 7 -1.0649 -6.2993 -0.2974 16 14 -0.4036 -8.3110 1.4833 17 1 -1.3490 -8.2314 2.6257 18 1 -0.9088 -9.2928 0.4902 19 1 0.9297 -8.7438 1.9732 20 6 1.7471 -3.4593 0.8314 21 17 2.9708 -3.5422 2.0600 22 1 -0.3633 0.0781 -1.0248 23 1 -0.3633 0.8484 0.5800 24 1 -0.3633 -0.9265 0.4446 25 1 1.6584 2.1311 0.0004 26 1 4.1193 2.1330 -0.0001 27 1 5.3562 0.0050 -0.0005 28 1 4.1343 -2.1311 0.0001 29 1 -0.7758 -4.4807 -1.0437 30 1 -1.7402 -6.9254 -0.6021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260923671.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:52 Heat of formation + Delta-G solvation = 74.623724 kcal Electronic energy + Delta-G solvation = -16852.955888 eV Core-core repulsion = 14060.872731 eV Total energy + Delta-G solvation = -2792.083157 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.78123 -39.83130 -37.25508 -35.74511 -33.95467 -33.44084 -31.01422 -30.08187 -27.75677 -26.84649 -23.82658 -22.81421 -21.48817 -21.15146 -19.46000 -17.85077 -16.91068 -16.72341 -16.52917 -15.76173 -15.17715 -14.82133 -14.59206 -14.47583 -14.14922 -13.91379 -13.32381 -13.09576 -12.97055 -12.90892 -12.75756 -12.57068 -12.32418 -12.10504 -12.01387 -11.62848 -11.30073 -11.03973 -10.42717 -9.72170 -9.47804 -9.05636 -8.52399 -6.15787 0.13186 0.39953 1.11650 1.14854 1.45322 1.50599 1.58392 2.21396 2.26405 2.29310 2.79062 3.38601 3.88993 3.91290 4.18044 4.36210 4.39255 4.57534 4.70974 4.75844 4.77283 4.98013 5.03146 5.10281 5.29073 5.44479 5.48535 5.53665 5.60949 5.90124 5.96165 6.42857 6.60779 6.77708 6.99071 7.21478 8.47636 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.033289 B = 0.006225 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.913429 B = 4496.776164 C = 5093.434314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.105 4.105 3 C -0.104 4.104 4 C -0.117 4.117 5 C -0.106 4.106 6 C -0.140 4.140 7 C 0.133 3.867 8 N -0.336 5.336 9 N -0.305 5.305 10 C 0.023 3.977 11 C -0.014 4.014 12 C -0.455 4.455 13 H 0.074 0.926 14 C 0.031 3.969 15 N -0.851 5.851 16 Si 0.991 3.009 17 H -0.265 1.265 18 H -0.267 1.267 19 H -0.263 1.263 20 C -0.066 4.066 21 Cl -0.033 7.033 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.034 0.966 25 H 0.158 0.842 26 H 0.166 0.834 27 H 0.156 0.844 28 H 0.110 0.890 29 H 0.207 0.793 30 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.684 10.120 1.223 11.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.108 4.108 3 C -0.122 4.122 4 C -0.136 4.136 5 C -0.124 4.124 6 C -0.161 4.161 7 C 0.041 3.959 8 N -0.121 5.121 9 N -0.126 5.126 10 C -0.164 4.164 11 C -0.024 4.024 12 C -0.488 4.488 13 H 0.092 0.908 14 C -0.180 4.180 15 N -0.481 5.481 16 Si 0.812 3.188 17 H -0.190 1.190 18 H -0.192 1.192 19 H -0.188 1.188 20 C -0.211 4.211 21 Cl -0.005 7.005 22 H 0.089 0.911 23 H 0.106 0.894 24 H 0.053 0.947 25 H 0.175 0.825 26 H 0.183 0.817 27 H 0.174 0.826 28 H 0.129 0.871 29 H 0.223 0.777 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.465 11.021 0.502 12.311 hybrid contribution 0.009 -1.863 0.844 2.045 sum 5.474 9.158 1.346 10.754 Atomic orbital electron populations 1.20614 0.90737 1.01804 1.02373 1.20130 0.97044 0.92096 1.01491 1.21263 0.94988 0.96616 0.99361 1.21572 0.93801 0.99074 0.99122 1.21302 1.01239 0.90808 0.99061 1.21219 0.91749 1.00141 1.03013 1.17806 0.91027 0.83200 1.03821 1.44849 1.27973 1.10785 1.28459 1.76776 1.02665 1.17792 1.15372 1.25122 1.01637 0.91182 0.98503 1.18190 0.93524 0.94298 0.96433 1.19025 1.15674 0.97173 1.16946 0.90763 1.26575 0.93277 1.03736 0.94369 1.69459 1.16700 1.37796 1.24138 0.85052 0.79288 0.75973 0.78461 1.19020 1.19192 1.18755 1.21428 1.04190 0.93710 1.01757 1.98201 1.52755 1.97958 1.51618 0.91129 0.89439 0.94731 0.82460 0.81666 0.82615 0.87143 0.77677 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.35 9.16 71.23 0.65 -2.70 16 2 C -0.11 -3.64 5.90 -19.74 -0.12 -3.75 16 3 C -0.10 -2.61 9.71 22.25 0.22 -2.39 16 4 C -0.12 -2.54 10.04 22.29 0.22 -2.31 16 5 C -0.11 -2.69 10.04 22.25 0.22 -2.47 16 6 C -0.14 -4.94 8.85 22.39 0.20 -4.74 16 7 C 0.13 5.44 6.08 38.13 0.23 5.67 16 8 N -0.34 -16.31 3.04 -176.16 -0.54 -16.85 16 9 N -0.31 -15.66 10.60 -55.89 -0.59 -16.25 16 10 C 0.02 1.26 10.91 85.84 0.94 2.19 16 11 C -0.01 -0.78 5.94 -21.25 -0.13 -0.90 16 12 C -0.46 -24.68 9.24 23.41 0.22 -24.46 16 13 H 0.07 3.94 7.78 -2.91 -0.02 3.92 16 14 C 0.03 1.56 5.49 85.16 0.47 2.03 16 15 N -0.85 -43.20 10.32 21.79 0.22 -42.97 16 16 Si 0.99 38.67 29.56 68.60 2.03 40.69 16 17 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 18 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 C -0.07 -3.38 7.37 84.54 0.62 -2.76 16 21 Cl -0.03 -1.42 27.42 -2.72 -0.07 -1.50 16 22 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 23 H 0.09 2.33 8.11 -2.39 -0.02 2.31 16 24 H 0.03 1.44 6.56 -2.39 -0.02 1.42 16 25 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 26 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 27 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 28 H 0.11 4.11 7.44 -2.91 -0.02 4.09 16 29 H 0.21 11.15 5.77 -2.91 -0.02 11.13 16 30 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 Total: -1.00 -62.01 277.29 5.96 -56.04 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 1.17 Total: 17.43 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 3.75 Total: -36.60 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -0.90 Total: -76.07 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.07 Total: -1.50 kcal Total: -62.01 5.96 -56.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260923671.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.667 kcal (2) G-P(sol) polarization free energy of solvation -62.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds