Wall clock time and date at job start Mon Mar 30 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39930 * 126.03499 * 2 1 4 4 C 1.30792 * 109.58100 * 179.97438 * 3 2 1 5 5 C 1.40150 * 108.96806 * 0.02562 * 4 3 2 6 6 C 1.47742 * 126.47268 * 180.02562 * 5 4 3 7 7 C 1.39773 * 120.14778 * 129.69627 * 6 5 4 8 8 C 1.37881 * 119.86477 * 179.76615 * 7 6 5 9 9 C 1.38424 * 120.16823 * 0.51081 * 8 7 6 10 10 C 1.38516 * 120.31003 * 359.74526 * 9 8 7 11 11 Cl 1.73591 * 119.93750 * 180.02562 * 10 9 8 12 12 C 1.38030 * 120.12544 * 359.97438 * 10 9 8 13 13 C 1.37496 * 126.03308 * 179.68592 * 2 1 3 14 14 C 1.39614 * 126.76936 * 0.02562 * 13 2 1 15 15 H 1.08004 * 120.00093 * 308.47097 * 14 13 2 16 16 C 1.40319 * 120.00220 * 128.47057 * 14 13 2 17 17 N 1.30685 * 120.00269 * 162.66868 * 16 14 13 18 18 Si 1.86806 * 119.99851 * 342.66161 * 16 14 13 19 19 H 1.48500 * 109.46957 * 95.59855 * 18 16 14 20 20 H 1.48495 * 109.47025 * 215.60074 * 18 16 14 21 21 H 1.48502 * 109.47146 * 335.60454 * 18 16 14 22 22 H 1.08998 * 109.46893 * 95.87221 * 1 2 3 23 23 H 1.09002 * 109.47180 * 215.86857 * 1 2 3 24 24 H 1.09001 * 109.46903 * 335.87110 * 1 2 3 25 25 H 1.08001 * 125.51881 * 179.97438 * 4 3 2 26 26 H 1.07996 * 120.06528 * 0.02646 * 7 6 5 27 27 H 1.07997 * 119.91650 * 180.25358 * 8 7 6 28 28 H 1.08007 * 119.84050 * 179.71628 * 9 8 7 29 29 H 1.08002 * 120.08788 * 179.97438 * 12 10 9 30 30 H 0.96999 * 120.00146 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2882 1.1316 0.0000 4 6 3.5425 0.7611 0.0006 5 6 3.6040 -0.6391 0.0003 6 6 4.8294 -1.4643 0.0013 7 6 4.9796 -2.4970 0.9313 8 6 6.1236 -3.2667 0.9239 9 6 7.1272 -3.0123 0.0051 10 6 6.9882 -1.9873 -0.9162 11 17 8.2526 -1.6772 -2.0645 12 6 5.8457 -1.2128 -0.9237 13 6 2.2738 -1.1119 0.0061 14 6 1.8610 -2.4456 0.0129 15 1 1.1452 -2.7856 0.7467 16 6 2.3761 -3.3443 -0.9336 17 7 2.2702 -4.6320 -0.7373 18 14 3.2130 -2.7001 -2.4745 19 1 4.6816 -2.6567 -2.2587 20 1 2.9067 -3.5985 -3.6165 21 1 2.7160 -1.3329 -2.7729 22 1 -0.3633 -0.1051 -1.0223 23 1 -0.3634 -0.8328 0.6021 24 1 -0.3633 0.9379 0.4201 25 1 4.3933 1.4264 0.0003 26 1 4.1993 -2.6942 1.6514 27 1 6.2387 -4.0674 1.6394 28 1 8.0231 -3.6156 0.0070 29 1 5.7381 -0.4135 -1.6420 30 1 2.6266 -5.2533 -1.3915 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260929025.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:05 Heat of formation + Delta-G solvation = 65.680419 kcal Electronic energy + Delta-G solvation = -17236.578866 eV Core-core repulsion = 14444.107898 eV Total energy + Delta-G solvation = -2792.470968 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.37327 -39.69217 -37.32859 -35.48154 -34.02588 -32.65442 -31.59676 -30.56765 -27.19530 -26.81765 -23.61514 -23.27141 -21.21437 -21.05371 -19.11714 -17.86496 -17.19721 -16.47762 -16.24185 -15.84863 -15.60711 -15.01371 -14.75731 -14.54834 -14.45837 -14.15932 -13.64433 -13.22898 -13.11993 -12.96573 -12.57248 -12.47008 -12.20317 -12.15535 -11.94642 -11.79039 -11.31244 -11.02975 -9.85670 -9.79790 -9.53289 -8.81130 -8.57700 -6.64095 0.35738 0.44741 1.07870 1.20825 1.37070 1.40868 1.50566 2.07558 2.10254 2.18721 2.84312 3.05278 3.91828 4.06731 4.17318 4.40864 4.48129 4.54491 4.58975 4.61793 4.73204 4.87349 5.03584 5.09690 5.22956 5.37052 5.42692 5.59071 5.84222 5.89330 6.07199 6.23859 6.27443 6.66007 6.95526 7.27006 8.26867 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.020824 B = 0.008834 C = 0.007714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.251613 B = 3168.986740 C = 3629.010631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.423 5.423 3 N -0.373 5.373 4 C 0.069 3.931 5 C -0.326 4.326 6 C 0.042 3.958 7 C -0.106 4.106 8 C -0.105 4.105 9 C -0.130 4.130 10 C -0.040 4.040 11 Cl -0.076 7.076 12 C -0.127 4.127 13 C 0.265 3.735 14 C -0.498 4.498 15 H 0.074 0.926 16 C 0.106 3.894 17 N -0.838 5.838 18 Si 0.902 3.098 19 H -0.221 1.221 20 H -0.284 1.284 21 H -0.281 1.281 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.190 0.810 26 H 0.112 0.888 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.123 0.877 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.036 2.196 -0.219 7.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.208 5.208 3 N -0.193 5.193 4 C -0.115 4.115 5 C -0.338 4.338 6 C 0.040 3.960 7 C -0.125 4.125 8 C -0.123 4.123 9 C -0.149 4.149 10 C -0.067 4.067 11 Cl -0.048 7.048 12 C -0.146 4.146 13 C 0.141 3.859 14 C -0.534 4.534 15 H 0.092 0.908 16 C -0.112 4.112 17 N -0.465 5.465 18 Si 0.727 3.273 19 H -0.144 1.144 20 H -0.211 1.211 21 H -0.206 1.206 22 H 0.085 0.915 23 H 0.100 0.900 24 H 0.111 0.889 25 H 0.206 0.794 26 H 0.130 0.870 27 H 0.168 0.832 28 H 0.169 0.831 29 H 0.141 0.859 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.202 3.040 -0.362 6.916 hybrid contribution 0.381 -0.555 -0.779 1.030 sum 6.583 2.485 -1.141 7.128 Atomic orbital electron populations 1.21646 0.74407 1.03803 1.02768 1.49562 1.06597 1.03582 1.61095 1.76635 1.02129 1.10031 1.30475 1.23669 0.94950 0.94289 0.98611 1.19116 0.91594 0.92786 1.30335 1.17939 0.90960 0.93997 0.93056 1.21426 0.97366 0.95337 0.98353 1.21239 0.92637 0.99411 0.99045 1.21198 1.00859 0.97512 0.95313 1.20802 0.90973 0.99650 0.95234 1.98317 1.51268 1.95479 1.59709 1.21097 0.93029 1.00925 0.99525 1.18936 0.88625 0.87910 0.90388 1.17916 1.28364 0.89618 1.17498 0.90846 1.25816 0.92236 0.93832 0.99352 1.69557 1.38119 1.03252 1.35610 0.86472 0.83381 0.78218 0.79250 1.14408 1.21078 1.20590 0.91548 0.90043 0.88938 0.79353 0.86990 0.83208 0.83059 0.85935 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.06 11.23 127.77 1.44 5.49 16 2 N -0.42 -19.11 4.08 -360.05 -1.47 -20.58 16 3 N -0.37 -16.61 12.48 -56.86 -0.71 -17.32 16 4 C 0.07 2.92 11.85 85.31 1.01 3.93 16 5 C -0.33 -14.73 4.53 -19.58 -0.09 -14.82 16 6 C 0.04 1.74 3.34 -20.04 -0.07 1.67 16 7 C -0.11 -4.21 8.88 22.56 0.20 -4.01 16 8 C -0.11 -3.43 10.03 22.23 0.22 -3.21 16 9 C -0.13 -3.97 9.83 22.38 0.22 -3.75 16 10 C -0.04 -1.34 6.23 22.29 0.14 -1.20 16 11 Cl -0.08 -2.19 28.95 -2.72 -0.08 -2.27 16 12 C -0.13 -4.75 7.01 22.58 0.16 -4.59 16 13 C 0.26 12.83 5.35 39.31 0.21 13.04 16 14 C -0.50 -25.47 8.62 23.11 0.20 -25.27 16 15 H 0.07 4.00 8.06 -2.91 -0.02 3.98 16 16 C 0.11 5.34 4.88 85.37 0.42 5.75 16 17 N -0.84 -42.91 13.92 21.90 0.30 -42.60 16 18 Si 0.90 41.58 24.76 68.60 1.70 43.28 16 19 H -0.22 -9.69 4.75 99.48 0.47 -9.22 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 22 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.08 2.77 7.98 -2.39 -0.02 2.75 16 24 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 25 H 0.19 6.47 8.06 -2.91 -0.02 6.44 16 26 H 0.11 4.78 7.94 -2.91 -0.02 4.76 16 27 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 28 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 30 H 0.29 13.77 8.29 -92.71 -0.77 13.00 16 Total: -1.00 -57.78 275.73 4.72 -53.06 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.92 Total: 13.38 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 4.06 Total: -26.95 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -1.87 Total: -80.50 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.70 Total: 43.28 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.08 Total: -2.27 kcal Total: -57.78 4.72 -53.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260929025.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.738 kcal (2) G-P(sol) polarization free energy of solvation -57.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds