Wall clock time and date at job start Mon Mar 30 2020 06:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38312 * 119.96751 * 2 1 4 4 C 1.38263 * 120.14287 * 180.02562 * 3 2 1 5 5 C 1.38138 * 120.06911 * 359.97438 * 4 3 2 6 6 C 1.38850 * 119.92624 * 359.97438 * 5 4 3 7 7 N 1.40084 * 120.06526 * 179.72534 * 6 5 4 8 8 N 1.39867 * 125.68823 * 145.02242 * 7 6 5 9 9 C 1.30309 * 109.30855 * 179.97438 * 8 7 6 10 10 C 1.41972 * 108.11063 * 0.02562 * 9 8 7 11 11 C 1.41462 * 126.57444 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00006 * 161.47452 * 11 10 9 13 13 C 1.39696 * 119.99737 * 341.47410 * 11 10 9 14 14 N 1.31045 * 119.99425 * 164.03077 * 13 11 10 15 15 Si 1.86798 * 120.00154 * 344.02708 * 13 11 10 16 16 H 1.48502 * 109.46765 * 91.50008 * 15 13 11 17 17 H 1.48499 * 109.47206 * 211.50203 * 15 13 11 18 18 H 1.48500 * 109.47281 * 331.50409 * 15 13 11 19 19 C 1.34841 * 125.69064 * 324.71655 * 7 6 5 20 20 Cl 1.73610 * 126.44474 * 359.97438 * 19 7 6 21 21 C 1.38088 * 119.96730 * 179.97438 * 2 1 3 22 22 H 1.08995 * 109.47039 * 89.99669 * 1 2 3 23 23 H 1.09004 * 109.47361 * 210.00064 * 1 2 3 24 24 H 1.09004 * 109.47095 * 330.00069 * 1 2 3 25 25 H 1.08002 * 119.92642 * 0.02562 * 3 2 1 26 26 H 1.07999 * 119.97004 * 179.97438 * 4 3 2 27 27 H 1.07995 * 120.03242 * 180.02562 * 5 4 3 28 28 H 1.07997 * 125.94680 * 180.02562 * 9 8 7 29 29 H 0.97000 * 119.99476 * 179.97438 * 14 13 11 30 30 H 1.08005 * 120.03013 * 0.02820 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2024 -0.0005 5 6 4.2762 0.0091 -0.0005 6 6 3.5856 -1.1954 0.0005 7 7 4.2882 -2.4073 -0.0053 8 7 3.8954 -3.5813 0.6456 9 6 4.7817 -4.5116 0.4283 10 6 5.8052 -3.9639 -0.3890 11 6 6.9582 -4.6351 -0.8592 12 1 7.5095 -4.2380 -1.6986 13 6 7.3835 -5.8117 -0.2377 14 7 8.2410 -6.5980 -0.8407 15 14 6.7301 -6.2640 1.4528 16 1 5.5194 -7.1112 1.3050 17 1 7.7706 -7.0137 2.2014 18 1 6.3806 -5.0266 2.1957 19 6 5.4530 -2.6382 -0.6441 20 17 6.3478 -1.4992 -1.6012 21 6 2.1967 -1.1963 0.0005 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6561 2.1325 0.0004 26 1 4.1171 2.1397 -0.0010 27 1 5.3562 0.0131 -0.0005 28 1 4.7442 -5.5233 0.8045 29 1 8.5367 -7.4148 -0.4091 30 1 1.6566 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260962628.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:55 Heat of formation + Delta-G solvation = 90.794507 kcal Electronic energy + Delta-G solvation = -16644.002838 eV Core-core repulsion = 13852.620898 eV Total energy + Delta-G solvation = -2791.381940 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.35071 -38.70879 -35.62910 -34.05902 -33.03778 -31.90422 -29.66279 -29.02272 -26.74658 -25.02275 -22.81077 -21.50098 -20.40100 -19.36617 -17.80388 -16.40141 -15.94036 -15.26069 -15.13323 -14.30019 -14.06031 -13.59917 -13.57625 -13.41385 -12.97502 -12.28084 -12.22088 -11.96956 -11.62870 -11.54974 -11.21227 -11.12454 -10.95405 -10.81675 -10.18999 -9.94077 -9.53655 -9.46455 -9.13090 -8.56792 -7.93876 -7.53079 -6.88884 -4.30795 1.32328 1.55359 2.64679 2.70357 2.97060 3.15079 3.19467 3.60922 3.64232 3.91814 3.99787 4.91776 4.99361 5.10830 5.27518 5.37188 5.52816 5.59723 5.62187 5.72759 5.84786 6.05536 6.14596 6.34288 6.58122 6.62424 6.71813 6.79062 6.98192 7.06168 7.39301 8.00549 8.30266 8.45446 8.51512 8.82274 10.15951 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.030540 B = 0.006296 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.605781 B = 4446.032980 C = 5090.439266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 C -0.146 4.146 4 C -0.095 4.095 5 C -0.145 4.145 6 C 0.191 3.809 7 N -0.327 5.327 8 N -0.275 5.275 9 C -0.004 4.004 10 C 0.011 3.989 11 C -0.420 4.420 12 H 0.096 0.904 13 C 0.085 3.915 14 N -0.815 5.815 15 Si 0.894 3.106 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.247 1.247 19 C -0.060 4.060 20 Cl -0.040 7.040 21 C -0.129 4.129 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.174 0.826 29 H 0.284 0.716 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.110 9.998 2.194 13.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.072 4.072 3 C -0.165 4.165 4 C -0.114 4.114 5 C -0.166 4.166 6 C 0.096 3.904 7 N -0.111 5.111 8 N -0.095 5.095 9 C -0.192 4.192 10 C 0.000 4.000 11 C -0.452 4.452 12 H 0.114 0.886 13 C -0.132 4.132 14 N -0.442 5.442 15 Si 0.721 3.279 16 H -0.192 1.192 17 H -0.211 1.211 18 H -0.171 1.171 19 C -0.203 4.203 20 Cl -0.012 7.012 21 C -0.150 4.150 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.137 0.863 26 H 0.142 0.858 27 H 0.150 0.850 28 H 0.190 0.810 29 H 0.095 0.905 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.867 10.151 2.601 14.393 hybrid contribution 0.753 -0.498 0.191 0.922 sum -9.114 9.653 2.792 13.566 Atomic orbital electron populations 1.20757 0.91158 1.02610 1.02208 1.19687 0.95867 0.92488 0.99194 1.20914 0.94144 0.97209 1.04237 1.20882 0.94037 0.97130 0.99308 1.21205 1.00992 0.90854 1.03551 1.17442 0.90838 0.83009 0.99094 1.44691 1.17654 1.07651 1.41091 1.76696 1.23371 0.91149 1.18306 1.23988 0.94175 0.98494 1.02573 1.17853 0.96026 0.89011 0.97066 1.18661 1.07054 1.04817 1.14641 0.88583 1.25865 0.93814 0.94519 0.98971 1.69729 1.26783 1.10323 1.37316 0.86716 0.78362 0.79810 0.83012 1.19246 1.21053 1.17110 1.20922 0.94266 0.92191 1.12932 1.98232 1.72914 1.59992 1.70094 1.20822 0.92134 0.98417 1.03640 0.91258 0.91551 0.91625 0.86256 0.85759 0.85013 0.81002 0.90547 0.85438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.00 0.36 -0.78 16 2 C -0.07 -0.99 5.88 -104.65 -0.62 -1.61 16 3 C -0.15 -1.88 9.70 -39.54 -0.38 -2.26 16 4 C -0.09 -1.31 10.04 -39.61 -0.40 -1.71 16 5 C -0.14 -2.50 8.78 -39.39 -0.35 -2.85 16 6 C 0.19 3.73 6.35 -83.62 -0.53 3.20 16 7 N -0.33 -7.45 3.71 -7.03 -0.03 -7.47 16 8 N -0.28 -6.45 12.21 30.99 0.38 -6.07 16 9 C 0.00 -0.10 9.27 -16.77 -0.16 -0.26 16 10 C 0.01 0.27 5.49 -106.77 -0.59 -0.32 16 11 C -0.42 -11.22 9.75 -37.81 -0.37 -11.58 16 12 H 0.10 2.72 8.06 -52.49 -0.42 2.29 16 13 C 0.09 2.19 5.50 -17.34 -0.10 2.09 16 14 N -0.82 -21.40 13.94 55.54 0.77 -20.63 16 15 Si 0.89 19.57 24.51 -169.99 -4.17 15.40 16 16 H -0.27 -5.48 6.68 56.52 0.38 -5.10 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.25 -5.58 6.54 56.52 0.37 -5.21 16 19 C -0.06 -1.44 7.36 -15.76 -0.12 -1.56 16 20 Cl -0.04 -0.83 26.36 -51.86 -1.37 -2.20 16 21 C -0.13 -2.21 9.40 -39.40 -0.37 -2.58 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 24 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 25 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 26 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 27 H 0.13 2.34 6.18 -52.49 -0.32 2.01 16 28 H 0.17 3.82 4.23 -52.49 -0.22 3.60 16 29 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 30 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 273.84 15.07 4.13 4.13 Total: -1.00 -28.03 273.84 -6.58 -34.60 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -2.69 Total: 2.46 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -3.60 Total: -20.22 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 1.13 Total: -34.17 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.17 Total: 15.40 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.37 Total: -2.20 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.03 -6.58 -34.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962628.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.398 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds