Wall clock time and date at job start Mon Mar 30 2020 06:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38312 * 119.96751 * 2 1 4 4 C 1.38263 * 120.14287 * 180.02562 * 3 2 1 5 5 C 1.38138 * 120.06911 * 359.97438 * 4 3 2 6 6 C 1.38850 * 119.92624 * 359.97438 * 5 4 3 7 7 N 1.40084 * 120.06526 * 179.72534 * 6 5 4 8 8 N 1.39867 * 125.68823 * 145.02242 * 7 6 5 9 9 C 1.30309 * 109.30855 * 179.97438 * 8 7 6 10 10 C 1.41972 * 108.11063 * 0.02562 * 9 8 7 11 11 C 1.41462 * 126.57444 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00006 * 161.47452 * 11 10 9 13 13 C 1.39696 * 119.99737 * 341.47410 * 11 10 9 14 14 N 1.31045 * 119.99425 * 164.03077 * 13 11 10 15 15 Si 1.86798 * 120.00154 * 344.02708 * 13 11 10 16 16 H 1.48502 * 109.46765 * 91.50008 * 15 13 11 17 17 H 1.48499 * 109.47206 * 211.50203 * 15 13 11 18 18 H 1.48500 * 109.47281 * 331.50409 * 15 13 11 19 19 C 1.34841 * 125.69064 * 324.71655 * 7 6 5 20 20 Cl 1.73610 * 126.44474 * 359.97438 * 19 7 6 21 21 C 1.38088 * 119.96730 * 179.97438 * 2 1 3 22 22 H 1.08995 * 109.47039 * 89.99669 * 1 2 3 23 23 H 1.09004 * 109.47361 * 210.00064 * 1 2 3 24 24 H 1.09004 * 109.47095 * 330.00069 * 1 2 3 25 25 H 1.08002 * 119.92642 * 0.02562 * 3 2 1 26 26 H 1.07999 * 119.97004 * 179.97438 * 4 3 2 27 27 H 1.07995 * 120.03242 * 180.02562 * 5 4 3 28 28 H 1.07997 * 125.94680 * 180.02562 * 9 8 7 29 29 H 0.97000 * 119.99476 * 179.97438 * 14 13 11 30 30 H 1.08005 * 120.03013 * 0.02820 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2024 -0.0005 5 6 4.2762 0.0091 -0.0005 6 6 3.5856 -1.1954 0.0005 7 7 4.2882 -2.4073 -0.0053 8 7 3.8954 -3.5813 0.6456 9 6 4.7817 -4.5116 0.4283 10 6 5.8052 -3.9639 -0.3890 11 6 6.9582 -4.6351 -0.8592 12 1 7.5095 -4.2380 -1.6986 13 6 7.3835 -5.8117 -0.2377 14 7 8.2410 -6.5980 -0.8407 15 14 6.7301 -6.2640 1.4528 16 1 5.5194 -7.1112 1.3050 17 1 7.7706 -7.0137 2.2014 18 1 6.3806 -5.0266 2.1957 19 6 5.4530 -2.6382 -0.6441 20 17 6.3478 -1.4992 -1.6012 21 6 2.1967 -1.1963 0.0005 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6561 2.1325 0.0004 26 1 4.1171 2.1397 -0.0010 27 1 5.3562 0.0131 -0.0005 28 1 4.7442 -5.5233 0.8045 29 1 8.5367 -7.4148 -0.4091 30 1 1.6566 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260962628.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:54 Heat of formation + Delta-G solvation = 74.904895 kcal Electronic energy + Delta-G solvation = -16644.691863 eV Core-core repulsion = 13852.620898 eV Total energy + Delta-G solvation = -2792.070965 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.06172 -40.02292 -37.42734 -35.79604 -34.56901 -33.16462 -31.51660 -30.51606 -27.79327 -26.83399 -24.30164 -22.83397 -22.09243 -21.04565 -19.51695 -18.04974 -17.33922 -16.82788 -16.61733 -16.01539 -15.50770 -15.32193 -14.82239 -14.58179 -14.21380 -14.04931 -13.54526 -13.25155 -13.07076 -12.93155 -12.88932 -12.71637 -12.53442 -12.13917 -11.92045 -11.62500 -11.34388 -11.24335 -10.74196 -9.76942 -9.68431 -9.15753 -8.79014 -6.28554 -0.05691 0.35548 0.88235 0.99473 1.22422 1.40246 1.45881 1.74972 1.97940 2.13347 2.74413 3.14751 3.66184 3.92290 3.95423 4.17328 4.35176 4.37797 4.46403 4.58540 4.81897 4.85061 4.88021 4.94711 5.11465 5.26604 5.38107 5.42325 5.56933 5.60710 5.89450 6.23276 6.35677 6.52682 6.68179 6.89518 8.31189 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.030540 B = 0.006296 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.605781 B = 4446.032980 C = 5090.439266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.069 4.069 3 C -0.126 4.126 4 C -0.089 4.089 5 C -0.157 4.157 6 C 0.140 3.860 7 N -0.324 5.324 8 N -0.282 5.282 9 C -0.019 4.019 10 C -0.018 4.018 11 C -0.450 4.450 12 H 0.063 0.937 13 C 0.050 3.950 14 N -0.856 5.856 15 Si 0.948 3.052 16 H -0.243 1.243 17 H -0.272 1.272 18 H -0.259 1.259 19 C -0.051 4.051 20 Cl -0.018 7.018 21 C -0.140 4.140 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.164 0.836 26 H 0.160 0.840 27 H 0.120 0.880 28 H 0.186 0.814 29 H 0.293 0.707 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.633 12.627 3.155 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.069 4.069 3 C -0.144 4.144 4 C -0.107 4.107 5 C -0.178 4.178 6 C 0.048 3.952 7 N -0.108 5.108 8 N -0.103 5.103 9 C -0.205 4.205 10 C -0.029 4.029 11 C -0.482 4.482 12 H 0.081 0.919 13 C -0.163 4.163 14 N -0.484 5.484 15 Si 0.772 3.228 16 H -0.168 1.168 17 H -0.198 1.198 18 H -0.184 1.184 19 C -0.196 4.196 20 Cl 0.010 6.990 21 C -0.160 4.160 22 H 0.101 0.899 23 H 0.084 0.916 24 H 0.111 0.889 25 H 0.182 0.818 26 H 0.177 0.823 27 H 0.138 0.862 28 H 0.202 0.798 29 H 0.103 0.897 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.425 12.808 3.557 18.196 hybrid contribution 1.363 -0.908 -0.192 1.649 sum -11.062 11.901 3.366 16.593 Atomic orbital electron populations 1.20849 0.88308 1.04001 1.03452 1.20148 0.97897 0.91575 0.97301 1.21472 0.93837 0.98506 1.00633 1.21317 0.94861 0.97044 0.97494 1.21302 1.00719 0.91467 1.04337 1.17949 0.91992 0.82324 1.02927 1.44991 1.17286 1.08527 1.39974 1.76627 1.23463 0.91554 1.18663 1.24088 0.93871 0.99318 1.03218 1.17988 0.96396 0.89861 0.98615 1.18533 1.08276 1.06394 1.15005 0.91928 1.26500 0.93877 0.94017 1.01888 1.69765 1.28462 1.11255 1.38957 0.85867 0.78952 0.79349 0.78621 1.16828 1.19759 1.18388 1.21343 0.94309 0.92495 1.11419 1.98229 1.72412 1.58964 1.69380 1.20937 0.91244 0.99655 1.04201 0.89932 0.91606 0.88911 0.81843 0.82251 0.86192 0.79755 0.89711 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.01 71.23 0.71 -1.06 16 2 C -0.07 -1.64 5.88 -19.88 -0.12 -1.76 16 3 C -0.13 -2.58 9.70 22.29 0.22 -2.36 16 4 C -0.09 -2.10 10.04 22.25 0.22 -1.88 16 5 C -0.16 -5.18 8.78 22.39 0.20 -4.99 16 6 C 0.14 5.38 6.35 38.12 0.24 5.62 16 7 N -0.32 -14.87 3.71 -176.15 -0.65 -15.52 16 8 N -0.28 -13.33 12.21 -55.88 -0.68 -14.01 16 9 C -0.02 -0.91 9.27 85.84 0.80 -0.12 16 10 C -0.02 -0.95 5.49 -21.25 -0.12 -1.06 16 11 C -0.45 -25.22 9.75 23.42 0.23 -24.99 16 12 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 13 C 0.05 2.66 5.50 85.16 0.47 3.13 16 14 N -0.86 -46.60 13.94 21.79 0.30 -46.30 16 15 Si 0.95 40.86 24.51 68.60 1.68 42.54 16 16 H -0.24 -9.49 6.68 99.48 0.66 -8.83 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 18 H -0.26 -11.61 6.54 99.48 0.65 -10.96 16 19 C -0.05 -2.47 7.36 84.54 0.62 -1.85 16 20 Cl -0.02 -0.74 26.36 -2.72 -0.07 -0.81 16 21 C -0.14 -4.59 9.40 22.39 0.21 -4.38 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 24 H 0.09 1.04 8.09 -2.39 -0.02 1.02 16 25 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 26 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 27 H 0.12 4.17 6.18 -2.91 -0.02 4.15 16 28 H 0.19 8.20 4.23 -2.91 -0.01 8.19 16 29 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 30 H 0.12 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -63.76 273.84 5.33 -58.43 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.07 Total: 11.38 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 3.68 Total: -35.70 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -1.03 Total: -75.84 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.68 Total: 42.54 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.07 Total: -0.81 kcal Total: -63.76 5.33 -58.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962628.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.332 kcal (2) G-P(sol) polarization free energy of solvation -63.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds