Wall clock time and date at job start Mon Mar 30 2020 06:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00268 * 2 1 4 4 H 1.48502 * 109.47195 * 270.00317 * 3 2 1 5 5 H 1.48500 * 109.46950 * 30.00184 * 3 2 1 6 6 H 1.48498 * 109.47289 * 149.99640 * 3 2 1 7 7 C 1.37883 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00215 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47181 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47210 * 180.02562 * 10 9 7 12 12 C 1.38260 * 120.00236 * 99.98219 * 11 10 9 13 13 C 1.38213 * 120.07197 * 180.02562 * 12 11 10 14 14 C 1.50697 * 119.96544 * 180.02562 * 13 12 11 15 15 F 1.39901 * 109.47041 * 299.97698 * 14 13 12 16 16 F 1.39902 * 109.46925 * 59.97091 * 14 13 12 17 17 C 1.38256 * 120.07134 * 359.97438 * 13 12 11 18 18 C 1.38375 * 119.99825 * 0.02562 * 17 13 12 19 19 F 1.35101 * 120.03012 * 179.97438 * 18 17 13 20 20 C 1.38367 * 119.99948 * 280.00200 * 11 10 9 21 21 F 1.35098 * 120.03581 * 359.95656 * 20 11 10 22 22 H 0.96994 * 120.00399 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46974 * 60.00162 * 9 7 2 24 24 H 1.08993 * 109.47077 * 300.00446 * 9 7 2 25 25 H 1.09005 * 109.46799 * 60.00342 * 10 9 7 26 26 H 1.09000 * 109.47457 * 300.00619 * 10 9 7 27 27 H 1.07993 * 119.95981 * 0.02562 * 12 11 10 28 28 H 1.08995 * 109.47496 * 179.97438 * 14 13 12 29 29 H 1.07995 * 120.00047 * 180.27428 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 6 1.4918 -4.9672 -0.0025 12 6 1.3253 -5.6689 -1.1821 13 6 0.6340 -6.8657 -1.1844 14 6 0.4545 -7.6287 -2.4715 15 9 -0.2400 -6.8354 -3.3910 16 9 1.7085 -7.9606 -2.9956 17 6 0.1079 -7.3641 -0.0071 18 6 0.2728 -6.6644 1.1753 19 9 -0.2415 -7.1506 2.3261 20 6 0.9661 -5.4632 1.1775 21 9 1.1287 -4.7785 2.3307 22 1 -0.4850 0.8400 -0.0004 23 1 0.6240 -2.5568 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8725 -3.6048 0.8878 26 1 2.8713 -3.6040 -0.8922 27 1 1.7359 -5.2813 -2.1027 28 1 -0.1110 -8.5401 -2.2778 29 1 -0.4282 -8.3016 -0.0094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260965135.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:44 Heat of formation + Delta-G solvation = -185.299154 kcal Electronic energy + Delta-G solvation = -19104.940793 eV Core-core repulsion = 15299.100667 eV Total energy + Delta-G solvation = -3805.840126 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.34010 -49.09728 -48.38530 -47.07993 -39.17371 -34.43351 -32.44012 -31.13201 -29.36011 -26.13616 -25.44379 -22.71988 -22.01465 -20.44036 -18.05076 -17.74216 -17.35760 -17.31807 -16.54385 -16.31480 -16.09218 -15.93800 -14.79709 -14.51327 -14.47558 -14.00706 -13.66563 -13.44871 -13.34547 -13.19563 -12.80060 -12.42850 -12.31650 -12.06619 -11.57964 -11.33129 -10.97709 -10.95480 -10.61204 -10.01401 -9.80870 -9.21123 -8.78391 -8.61840 -8.40283 -6.04697 -4.08445 0.76380 0.98604 3.23225 3.30092 3.36506 3.39773 3.41543 3.85283 3.97682 4.26692 4.41705 4.54686 4.71791 4.88492 4.90549 5.01607 5.31380 5.51950 5.65069 5.79123 5.99389 6.06883 6.40699 6.46054 6.66719 6.88074 7.57259 7.67045 7.92364 8.31500 8.97382 9.56011 11.06524 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.020354 B = 0.005526 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.344319 B = 5065.640505 C = 5966.403126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.065 4.065 12 C -0.062 4.062 13 C -0.158 4.158 14 C 0.320 3.680 15 F -0.195 7.195 16 F -0.198 7.198 17 C -0.111 4.111 18 C 0.063 3.937 19 F -0.129 7.129 20 C 0.092 3.908 21 F -0.116 7.116 22 H 0.262 0.738 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.120 0.880 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 -17.106 -2.382 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.119 4.119 11 C -0.066 4.066 12 C -0.081 4.081 13 C -0.160 4.160 14 C 0.266 3.734 15 F -0.176 7.176 16 F -0.179 7.179 17 C -0.130 4.130 18 C 0.043 3.957 19 F -0.107 7.107 20 C 0.072 3.928 21 F -0.094 7.094 22 H 0.071 0.929 23 H 0.038 0.962 24 H 0.039 0.961 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.162 0.838 28 H 0.137 0.863 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.202 -16.966 -2.321 17.125 hybrid contribution 0.278 1.034 0.383 1.137 sum 0.480 -15.931 -1.938 16.056 Atomic orbital electron populations 1.69963 1.06102 1.26796 1.50316 1.25018 0.94855 0.99333 0.95105 0.86556 0.79830 0.83271 0.78137 1.20586 1.21176 1.19806 1.21166 0.93072 0.90659 1.51306 0.92410 1.19109 0.93585 0.90336 0.97824 1.20927 0.98672 0.89642 1.02648 1.20440 0.97662 0.98141 0.90345 1.20892 0.96295 0.92478 0.98400 1.20112 1.03611 0.97989 0.94246 1.20250 0.78233 0.92486 0.82416 1.93049 1.78988 1.76860 1.68721 1.93025 1.43873 1.93048 1.87990 1.20568 1.01668 1.00907 0.89833 1.17462 1.01038 0.94091 0.83127 1.91522 1.84903 1.87367 1.46922 1.17694 1.00873 0.90646 0.83604 1.91566 1.93304 1.78423 1.46104 0.92860 0.96161 0.96144 0.91058 0.90869 0.83783 0.86268 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.29 55.43 0.74 -26.05 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 15 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 9 C 0.03 0.72 4.95 -27.88 -0.14 0.59 15 10 C -0.08 -1.63 5.01 -27.89 -0.14 -1.77 15 11 C -0.06 -1.12 5.14 -104.57 -0.54 -1.66 15 12 C -0.06 -0.92 9.22 -39.58 -0.36 -1.29 15 13 C -0.16 -1.94 5.37 -104.63 -0.56 -2.51 15 14 C 0.32 3.22 5.45 36.00 0.20 3.41 15 15 F -0.20 -2.43 17.26 2.25 0.04 -2.39 15 16 F -0.20 -2.27 17.26 2.25 0.04 -2.23 15 17 C -0.11 -1.28 9.65 -39.52 -0.38 -1.66 15 18 C 0.06 0.92 7.31 -39.36 -0.29 0.63 15 19 F -0.13 -1.90 17.18 2.25 0.04 -1.86 15 20 C 0.09 1.59 7.25 -39.37 -0.29 1.31 15 21 F -0.12 -2.23 16.58 2.25 0.04 -2.19 15 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 23 H 0.02 0.54 8.14 -51.93 -0.42 0.12 15 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 25 H 0.07 1.41 7.95 -51.93 -0.41 1.00 15 26 H 0.07 1.35 8.00 -51.93 -0.42 0.93 15 27 H 0.14 2.00 8.03 -52.49 -0.42 1.58 15 28 H 0.12 0.70 7.87 -51.93 -0.41 0.29 15 29 H 0.15 1.13 7.94 -52.49 -0.42 0.72 15 LS Contribution 278.46 15.07 4.20 4.20 Total: -1.00 -30.70 278.46 -5.31 -36.01 By element: Atomic # 1 Polarization: -3.23 SS G_CDS: -2.46 Total: -5.69 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -2.91 Total: -16.29 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.05 kcal Atomic # 9 Polarization: -8.82 SS G_CDS: 0.15 Total: -8.66 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.70 -5.31 -36.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260965135.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.294 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds