Wall clock time and date at job start Mon Mar 30 2020 06:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00268 * 2 1 4 4 H 1.48502 * 109.47195 * 270.00317 * 3 2 1 5 5 H 1.48500 * 109.46950 * 30.00184 * 3 2 1 6 6 H 1.48498 * 109.47289 * 149.99640 * 3 2 1 7 7 C 1.37883 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00215 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47181 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47210 * 180.02562 * 10 9 7 12 12 C 1.38260 * 120.00236 * 99.98219 * 11 10 9 13 13 C 1.38213 * 120.07197 * 180.02562 * 12 11 10 14 14 C 1.50697 * 119.96544 * 180.02562 * 13 12 11 15 15 F 1.39901 * 109.47041 * 299.97698 * 14 13 12 16 16 F 1.39902 * 109.46925 * 59.97091 * 14 13 12 17 17 C 1.38256 * 120.07134 * 359.97438 * 13 12 11 18 18 C 1.38375 * 119.99825 * 0.02562 * 17 13 12 19 19 F 1.35101 * 120.03012 * 179.97438 * 18 17 13 20 20 C 1.38367 * 119.99948 * 280.00200 * 11 10 9 21 21 F 1.35098 * 120.03581 * 359.95656 * 20 11 10 22 22 H 0.96994 * 120.00399 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46974 * 60.00162 * 9 7 2 24 24 H 1.08993 * 109.47077 * 300.00446 * 9 7 2 25 25 H 1.09005 * 109.46799 * 60.00342 * 10 9 7 26 26 H 1.09000 * 109.47457 * 300.00619 * 10 9 7 27 27 H 1.07993 * 119.95981 * 0.02562 * 12 11 10 28 28 H 1.08995 * 109.47496 * 179.97438 * 14 13 12 29 29 H 1.07995 * 120.00047 * 180.27428 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 6 1.4918 -4.9672 -0.0025 12 6 1.3253 -5.6689 -1.1821 13 6 0.6340 -6.8657 -1.1844 14 6 0.4545 -7.6287 -2.4715 15 9 -0.2400 -6.8354 -3.3910 16 9 1.7085 -7.9606 -2.9956 17 6 0.1079 -7.3641 -0.0071 18 6 0.2728 -6.6644 1.1753 19 9 -0.2415 -7.1506 2.3261 20 6 0.9661 -5.4632 1.1775 21 9 1.1287 -4.7785 2.3307 22 1 -0.4850 0.8400 -0.0004 23 1 0.6240 -2.5568 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8725 -3.6048 0.8878 26 1 2.8713 -3.6040 -0.8922 27 1 1.7359 -5.2813 -2.1027 28 1 -0.1110 -8.5401 -2.2778 29 1 -0.4282 -8.3016 -0.0094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260965135.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:43 Heat of formation + Delta-G solvation = -201.970656 kcal Electronic energy + Delta-G solvation = -19105.663724 eV Core-core repulsion = 15299.100667 eV Total energy + Delta-G solvation = -3806.563056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.59409 -49.93536 -49.67737 -47.93284 -40.34530 -36.17328 -34.25700 -32.29742 -30.98718 -27.30636 -27.04911 -24.24357 -23.32398 -21.93333 -19.16210 -18.87580 -18.63922 -18.34976 -18.16221 -17.44644 -17.39736 -16.99045 -16.54255 -16.07817 -15.72876 -14.98289 -14.89914 -14.86825 -14.55830 -14.32121 -14.30482 -14.05250 -13.60700 -13.28005 -13.11027 -12.86489 -12.62924 -12.46608 -12.06266 -11.88001 -11.67225 -11.27353 -10.59619 -9.96661 -9.93541 -8.23319 -6.35635 -0.39961 -0.14711 1.39252 1.40914 1.51973 2.07139 2.39162 2.45964 2.80179 3.10260 3.20340 3.24532 3.37913 3.71702 3.90659 3.95641 4.08119 4.25403 4.41694 4.63092 4.68134 4.77177 4.91363 5.01577 5.05613 5.42177 5.54973 5.60642 5.76898 6.15908 6.80184 7.34102 8.88720 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.020354 B = 0.005526 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.344319 B = 5065.640505 C = 5966.403126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.036 3.964 10 C -0.069 4.069 11 C -0.089 4.089 12 C -0.067 4.067 13 C -0.152 4.152 14 C 0.320 3.680 15 F -0.210 7.210 16 F -0.206 7.206 17 C -0.079 4.079 18 C 0.057 3.943 19 F -0.130 7.130 20 C 0.062 3.938 21 F -0.139 7.139 22 H 0.264 0.736 23 H -0.004 1.004 24 H -0.014 1.014 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.148 0.852 28 H 0.180 0.820 29 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 -18.919 -3.338 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.001 4.001 10 C -0.106 4.106 11 C -0.090 4.090 12 C -0.086 4.086 13 C -0.153 4.153 14 C 0.267 3.733 15 F -0.192 7.192 16 F -0.187 7.187 17 C -0.097 4.097 18 C 0.037 3.963 19 F -0.108 7.108 20 C 0.042 3.958 21 F -0.117 7.117 22 H 0.073 0.927 23 H 0.014 0.986 24 H 0.004 0.996 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.165 0.835 28 H 0.196 0.804 29 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.376 -18.793 -3.281 19.081 hybrid contribution 0.188 1.507 0.663 1.657 sum 0.564 -17.286 -2.618 17.492 Atomic orbital electron populations 1.70104 1.07931 1.27913 1.51384 1.26006 0.95755 1.03498 0.94513 0.85406 0.78606 0.78157 0.78644 1.19443 1.20865 1.18666 1.21652 0.93728 0.91933 1.50971 0.91637 1.18912 0.93966 0.92365 0.94901 1.20593 0.97605 0.89460 1.02941 1.20158 0.99423 0.97776 0.91664 1.21037 0.96596 0.93514 0.97416 1.20476 1.01868 0.96894 0.96066 1.20774 0.78359 0.93703 0.80441 1.93027 1.79257 1.77686 1.69187 1.93015 1.44761 1.92999 1.87968 1.21080 0.99318 1.01613 0.87704 1.17622 1.00937 0.93503 0.84239 1.91521 1.84840 1.87163 1.47286 1.18074 1.02652 0.92080 0.82983 1.91495 1.93734 1.79241 1.47244 0.92689 0.98551 0.99570 0.91663 0.89592 0.83454 0.80374 0.78163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.65 13.29 21.45 0.28 -57.37 15 2 C 0.00 0.01 5.46 84.66 0.46 0.48 15 3 Si 0.97 44.54 29.54 68.60 2.03 46.56 15 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 15 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 15 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 7 C -0.55 -31.24 9.11 25.60 0.23 -31.01 15 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 15 9 C 0.04 1.91 4.95 29.85 0.15 2.06 15 10 C -0.07 -2.86 5.01 29.85 0.15 -2.71 15 11 C -0.09 -3.15 5.14 -19.83 -0.10 -3.25 15 12 C -0.07 -1.93 9.22 22.27 0.21 -1.73 15 13 C -0.15 -3.25 5.37 -19.87 -0.11 -3.35 15 14 C 0.32 5.07 5.45 71.24 0.39 5.45 15 15 F -0.21 -4.62 17.26 44.97 0.78 -3.84 15 16 F -0.21 -4.02 17.26 44.97 0.78 -3.25 15 17 C -0.08 -1.50 9.65 22.31 0.22 -1.29 15 18 C 0.06 1.58 7.31 22.41 0.16 1.75 15 19 F -0.13 -3.63 17.18 44.97 0.77 -2.86 15 20 C 0.06 2.20 7.25 22.41 0.16 2.36 15 21 F -0.14 -5.64 16.58 44.97 0.75 -4.90 15 22 H 0.26 15.30 8.31 -92.71 -0.77 14.53 15 23 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 15 24 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 15 25 H 0.06 2.72 7.95 -2.38 -0.02 2.70 15 26 H 0.09 3.25 8.00 -2.39 -0.02 3.23 15 27 H 0.15 4.03 8.03 -2.91 -0.02 4.00 15 28 H 0.18 0.86 7.87 -2.39 -0.02 0.84 15 29 H 0.20 1.70 7.94 -2.91 -0.02 1.68 15 Total: -1.00 -70.03 278.46 8.49 -61.55 By element: Atomic # 1 Polarization: -5.84 SS G_CDS: 1.19 Total: -4.66 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 1.92 Total: -31.24 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.28 Total: -57.37 kcal Atomic # 9 Polarization: -17.91 SS G_CDS: 3.07 Total: -14.84 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -70.03 8.49 -61.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260965135.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.425 kcal (2) G-P(sol) polarization free energy of solvation -70.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds