Wall clock time and date at job start Mon Mar 30 2020 06:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38290 * 119.92912 * 2 1 4 4 C 1.38101 * 120.06838 * 180.02562 * 3 2 1 5 5 C 1.38873 * 119.93253 * 359.97438 * 4 3 2 6 6 N 1.40077 * 120.07191 * 180.02562 * 5 4 3 7 7 N 1.39871 * 125.68893 * 324.97676 * 6 5 4 8 8 C 1.30306 * 109.31101 * 180.02562 * 7 6 5 9 9 C 1.41966 * 108.10768 * 359.97438 * 8 7 6 10 10 C 1.41464 * 126.56989 * 180.26450 * 9 8 7 11 11 H 1.08009 * 119.99582 * 179.68845 * 10 9 8 12 12 C 1.39685 * 120.00332 * 359.69026 * 10 9 8 13 13 N 1.31051 * 119.99665 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00204 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47138 * 59.99709 * 14 12 10 16 16 H 1.48508 * 109.47163 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47218 * 299.99819 * 14 12 10 18 18 C 1.34834 * 125.69076 * 145.00227 * 6 5 4 19 19 Cl 1.73601 * 126.44909 * 0.02562 * 18 6 5 20 20 C 1.38871 * 119.86146 * 0.28066 * 5 4 3 21 21 C 1.38112 * 119.92327 * 359.42175 * 20 5 4 22 22 H 1.08998 * 109.47122 * 90.00400 * 1 2 3 23 23 H 1.09003 * 109.46546 * 210.00581 * 1 2 3 24 24 H 1.09001 * 109.47078 * 329.99527 * 1 2 3 25 25 H 1.07995 * 119.96103 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.03566 * 179.97438 * 4 3 2 27 27 H 1.07998 * 125.94752 * 180.02562 * 8 7 6 28 28 H 0.97006 * 119.99547 * 180.02562 * 13 12 10 29 29 H 1.07993 * 120.03940 * 179.70178 * 20 5 4 30 30 H 1.08004 * 119.96206 * 180.29575 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1985 0.0000 4 6 3.5780 1.2018 -0.0005 5 6 4.2739 0.0000 -0.0005 6 7 5.6747 0.0000 -0.0005 7 7 6.4907 0.9303 -0.6525 8 6 7.7408 0.6291 -0.4421 9 6 7.7837 -0.5328 0.3725 10 6 8.9448 -1.1919 0.8402 11 1 8.8535 -2.0705 1.4618 12 6 10.2091 -0.7064 0.4984 13 7 10.3197 0.3594 -0.2562 14 14 11.7422 -1.5771 1.1154 15 1 11.7495 -2.9771 0.6203 16 1 12.9484 -0.8694 0.6157 17 1 11.7475 -1.5773 2.6004 18 6 6.4613 -0.8970 0.6276 19 17 5.9289 -2.2510 1.5747 20 6 3.5782 -1.2018 -0.0059 21 6 2.1971 -1.1984 0.0009 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3632 -0.8900 0.5140 24 1 -0.3633 0.8900 0.5139 25 1 1.6553 2.1327 -0.0004 26 1 4.1163 2.1381 -0.0010 27 1 8.5957 1.1698 -0.8207 28 1 11.1978 0.6963 -0.4939 29 1 4.1164 -2.1380 -0.0108 30 1 1.6554 -2.1328 0.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260969303.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:56 Heat of formation + Delta-G solvation = 70.309220 kcal Electronic energy + Delta-G solvation = -16506.061459 eV Core-core repulsion = 13713.791211 eV Total energy + Delta-G solvation = -2792.270248 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.76338 -39.92621 -37.30706 -35.89243 -34.44356 -32.03734 -31.40262 -31.03627 -27.67962 -26.34186 -23.84569 -23.07291 -21.56196 -21.15530 -19.61168 -17.90400 -16.86734 -16.55285 -16.35079 -15.83699 -15.35509 -14.81184 -14.61299 -14.51109 -14.45095 -13.94713 -13.13004 -13.06039 -12.93491 -12.89159 -12.82601 -12.67254 -12.47660 -12.10724 -11.97771 -11.54176 -11.32548 -11.05341 -10.48507 -9.95115 -9.52662 -8.92310 -8.55690 -6.18740 0.04025 0.39719 1.06893 1.16995 1.45412 1.51655 1.56910 2.17652 2.20530 2.27778 2.78494 3.35608 3.85210 3.99533 4.06539 4.23585 4.44436 4.53613 4.73414 4.84305 4.94160 4.96546 5.02996 5.12545 5.22257 5.36855 5.43142 5.51302 5.64766 5.85772 5.95083 6.39244 6.54270 6.73335 6.95111 7.15160 8.44366 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.041776 B = 0.005314 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.074732 B = 5267.740583 C = 5842.756430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.103 4.103 3 C -0.097 4.097 4 C -0.140 4.140 5 C 0.139 3.861 6 N -0.339 5.339 7 N -0.316 5.316 8 C 0.030 3.970 9 C -0.011 4.011 10 C -0.455 4.455 11 H 0.077 0.923 12 C 0.032 3.968 13 N -0.849 5.849 14 Si 0.993 3.007 15 H -0.263 1.263 16 H -0.267 1.267 17 H -0.263 1.263 18 C -0.075 4.075 19 Cl -0.028 7.028 20 C -0.150 4.150 21 C -0.096 4.096 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.156 0.844 26 H 0.115 0.885 27 H 0.211 0.789 28 H 0.290 0.710 29 H 0.119 0.881 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.612 -1.509 1.062 12.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.104 4.104 3 C -0.115 4.115 4 C -0.161 4.161 5 C 0.046 3.954 6 N -0.123 5.123 7 N -0.136 5.136 8 C -0.158 4.158 9 C -0.021 4.021 10 C -0.487 4.487 11 H 0.096 0.904 12 C -0.180 4.180 13 N -0.478 5.478 14 Si 0.814 3.186 15 H -0.188 1.188 16 H -0.191 1.191 17 H -0.188 1.188 18 C -0.219 4.219 19 Cl 0.000 7.000 20 C -0.171 4.171 21 C -0.114 4.114 22 H 0.100 0.900 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.173 0.827 26 H 0.133 0.867 27 H 0.227 0.773 28 H 0.101 0.899 29 H 0.137 0.863 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.276 -0.717 0.511 13.306 hybrid contribution 1.654 -0.904 0.623 1.985 sum -11.622 -1.620 1.133 11.789 Atomic orbital electron populations 1.20799 0.87947 1.04022 1.03349 1.20332 0.98184 0.92110 0.99780 1.21181 0.91714 0.99570 0.99023 1.21031 0.95574 0.95936 1.03531 1.17967 0.78825 0.95997 1.02628 1.44963 1.03365 1.22181 1.41748 1.76724 1.03467 1.13603 1.19811 1.25218 0.93487 0.97828 0.99244 1.18214 0.90460 0.95418 0.97984 1.19044 0.89643 1.11426 1.28584 0.90448 1.26623 1.03338 0.94852 0.93156 1.69444 1.27345 1.20875 1.30179 0.85067 0.75568 0.78733 0.79213 1.18774 1.19095 1.18792 1.21386 0.90333 0.97153 1.12989 1.98193 1.90263 1.41231 1.70314 1.21251 0.95860 0.96068 1.03968 1.21161 0.91647 0.99576 0.99005 0.90031 0.90282 0.90252 0.82677 0.86694 0.77316 0.89931 0.86287 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 10.01 71.24 0.71 -0.81 16 2 C -0.10 -2.45 5.88 -19.84 -0.12 -2.57 16 3 C -0.10 -2.59 9.69 22.25 0.22 -2.37 16 4 C -0.14 -5.08 9.75 22.39 0.22 -4.86 16 5 C 0.14 5.82 6.35 38.13 0.24 6.06 16 6 N -0.34 -16.87 3.71 -176.16 -0.65 -17.53 16 7 N -0.32 -16.59 12.21 -55.89 -0.68 -17.28 16 8 C 0.03 1.64 10.91 85.84 0.94 2.58 16 9 C -0.01 -0.58 5.94 -21.25 -0.13 -0.71 16 10 C -0.45 -24.48 9.24 23.41 0.22 -24.26 16 11 H 0.08 4.05 7.79 -2.91 -0.02 4.03 16 12 C 0.03 1.56 5.49 85.16 0.47 2.03 16 13 N -0.85 -42.75 10.32 21.79 0.22 -42.52 16 14 Si 0.99 38.17 29.56 68.60 2.03 40.20 16 15 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 16 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 17 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 18 C -0.07 -3.84 7.36 84.54 0.62 -3.22 16 19 Cl -0.03 -1.19 26.30 -2.72 -0.07 -1.26 16 20 C -0.15 -5.41 8.79 22.39 0.20 -5.22 16 21 C -0.10 -2.57 9.69 22.25 0.22 -2.36 16 22 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 24 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 25 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 26 H 0.11 4.35 8.05 -2.91 -0.02 4.33 16 27 H 0.21 11.33 5.77 -2.91 -0.02 11.31 16 28 H 0.29 13.19 8.30 -92.70 -0.77 12.42 16 29 H 0.12 4.47 6.16 -2.91 -0.02 4.45 16 30 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -61.74 279.02 5.81 -55.93 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 1.17 Total: 18.17 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 3.80 Total: -35.70 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -1.11 Total: -77.33 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.07 Total: -1.26 kcal Total: -61.74 5.81 -55.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260969303.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.235 kcal (2) G-P(sol) polarization free energy of solvation -61.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds