Wall clock time and date at job start Mon Mar 30 2020 06:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99853 * 2 1 4 4 H 1.48497 * 109.47165 * 269.99869 * 3 2 1 5 5 H 1.48507 * 109.47175 * 30.00023 * 3 2 1 6 6 H 1.48508 * 109.47100 * 149.99855 * 3 2 1 7 7 C 1.37875 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00059 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.50701 * 109.46951 * 180.02562 * 9 7 2 11 11 C 1.38253 * 119.99890 * 270.01739 * 10 9 7 12 12 C 1.38220 * 120.00051 * 180.02562 * 11 10 9 13 13 C 1.38255 * 119.99697 * 359.95697 * 12 11 10 14 14 C 1.38217 * 120.00132 * 0.07194 * 13 12 11 15 15 C 1.50706 * 119.99801 * 179.97438 * 14 13 12 16 16 F 1.39900 * 109.47329 * 29.94951 * 15 14 13 17 17 F 1.39894 * 109.47167 * 149.95137 * 15 14 13 18 18 C 1.52995 * 109.46836 * 269.95075 * 15 14 13 19 19 F 1.39907 * 109.47418 * 60.00163 * 18 15 14 20 20 F 1.39905 * 109.47222 * 180.02562 * 18 15 14 21 21 C 1.38215 * 119.99815 * 89.99902 * 10 9 7 22 22 H 0.97008 * 119.99981 * 0.02562 * 1 2 3 23 23 H 1.08990 * 109.47329 * 59.99761 * 9 7 2 24 24 H 1.09006 * 109.47198 * 299.99651 * 9 7 2 25 25 H 1.08002 * 120.00348 * 359.97438 * 11 10 9 26 26 H 1.07999 * 120.00153 * 179.97438 * 12 11 10 27 27 H 1.08005 * 119.99804 * 179.97438 * 13 12 11 28 28 H 1.09002 * 109.47404 * 300.00282 * 18 15 14 29 29 H 1.07995 * 120.00164 * 359.72517 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0010 11 6 4.2435 -3.2669 1.1983 12 6 4.7047 -4.5699 1.1982 13 6 4.9356 -5.2213 0.0008 14 6 4.7066 -4.5692 -1.1962 15 6 4.9588 -5.2792 -2.5013 16 9 4.7450 -6.6516 -2.3346 17 9 4.0854 -4.7863 -3.4767 18 6 6.4040 -5.0380 -2.9420 19 9 7.2775 -5.5309 -1.9666 20 9 6.6380 -5.6966 -4.1540 21 6 4.2446 -3.2661 -1.1961 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6800 0.8910 24 1 3.8752 -0.6804 -0.8889 25 1 4.0632 -2.7580 2.1336 26 1 4.8845 -5.0792 2.1334 27 1 5.2964 -6.2393 0.0007 28 1 6.5706 -3.9686 -3.0719 29 1 4.0608 -2.7583 -2.1313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261114114.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:45 Heat of formation + Delta-G solvation = -181.478616 kcal Electronic energy + Delta-G solvation = -19538.217758 eV Core-core repulsion = 15732.543303 eV Total energy + Delta-G solvation = -3805.674455 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.91446 -48.67409 -47.55176 -47.08975 -39.04821 -33.83312 -32.36611 -31.45922 -28.79604 -27.71590 -24.01903 -23.20947 -21.63087 -20.44453 -18.33948 -18.21334 -17.89527 -16.88275 -16.80903 -16.66224 -15.63150 -14.75069 -14.60452 -14.46183 -14.22043 -14.04963 -13.88596 -13.71458 -13.60591 -13.10404 -13.00857 -12.55626 -12.43707 -12.17744 -11.83736 -11.45529 -11.32286 -10.80771 -10.48780 -10.22224 -10.10946 -9.50402 -8.76273 -8.67337 -8.17541 -6.16204 -4.17056 1.34888 1.73751 2.65009 3.21701 3.30245 3.30902 3.61276 3.69136 3.80090 3.88893 4.22752 4.32687 4.70294 4.72642 5.14522 5.23960 5.24718 5.56316 5.72488 5.86217 6.07294 6.33653 6.56776 6.66854 6.75088 6.84996 7.24513 7.31503 7.57195 8.38133 8.88153 9.42802 10.96511 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.028168 B = 0.005492 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.794504 B = 5096.710416 C = 5366.295454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.030 4.030 11 C -0.093 4.093 12 C -0.122 4.122 13 C -0.098 4.098 14 C -0.177 4.177 15 C 0.308 3.692 16 F -0.179 7.179 17 F -0.171 7.171 18 C 0.240 3.760 19 F -0.178 7.178 20 F -0.188 7.188 21 C -0.084 4.084 22 H 0.266 0.734 23 H 0.032 0.968 24 H 0.026 0.974 25 H 0.128 0.872 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.143 0.857 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.563 -8.526 -2.756 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.030 4.030 11 C -0.111 4.111 12 C -0.140 4.140 13 C -0.116 4.116 14 C -0.178 4.178 15 C 0.271 3.729 16 F -0.159 7.159 17 F -0.151 7.151 18 C 0.185 3.815 19 F -0.159 7.159 20 F -0.169 7.169 21 C -0.102 4.102 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.146 0.854 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.160 0.840 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.393 -8.462 -2.789 16.087 hybrid contribution 0.137 0.609 -0.174 0.648 sum 13.530 -7.853 -2.963 15.922 Atomic orbital electron populations 1.69894 1.06294 1.27136 1.50082 1.24995 0.94745 0.99053 0.94314 0.86808 0.80361 0.83629 0.78720 1.20065 1.21155 1.18905 1.20893 0.88017 0.94803 1.51972 0.90757 1.18843 0.97697 0.88000 0.97748 1.20298 0.92716 0.98383 0.91585 1.21322 0.96779 0.94322 0.98646 1.21053 1.00487 0.95131 0.97325 1.20686 0.99985 0.99509 0.91390 1.19778 1.09628 0.96573 0.91847 1.20310 0.87980 0.77226 0.87404 1.93070 1.95594 1.31451 1.95821 1.93105 1.70655 1.87271 1.64094 1.22822 0.87063 0.97700 0.73883 1.93050 1.70168 1.90019 1.62678 1.93055 1.95074 1.83825 1.44967 1.20857 0.97250 0.92505 0.99552 0.92450 0.94996 0.95575 0.85443 0.85765 0.85857 0.83979 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.96 55.43 0.77 -26.00 15 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 3 Si 0.88 20.48 27.47 -169.99 -4.67 15.81 15 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 15 6 H -0.26 -5.83 6.54 56.52 0.37 -5.46 15 7 C -0.52 -14.11 9.65 -34.44 -0.33 -14.44 15 8 H 0.07 2.24 7.98 -52.48 -0.42 1.82 15 9 C 0.01 0.31 4.17 -29.03 -0.12 0.19 15 10 C -0.03 -0.57 5.07 -104.62 -0.53 -1.10 15 11 C -0.09 -1.57 9.70 -39.58 -0.38 -1.96 15 12 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 15 13 C -0.10 -1.43 9.12 -39.58 -0.36 -1.79 15 14 C -0.18 -2.77 4.79 -104.62 -0.50 -3.27 15 15 C 0.31 4.42 1.88 -27.88 -0.05 4.37 15 16 F -0.18 -2.71 16.17 2.25 0.04 -2.67 15 17 F -0.17 -2.64 16.19 2.25 0.04 -2.60 15 18 C 0.24 2.82 4.82 37.16 0.18 3.00 15 19 F -0.18 -2.21 16.79 2.25 0.04 -2.17 15 20 F -0.19 -2.38 17.30 2.25 0.04 -2.34 15 21 C -0.08 -1.46 9.06 -39.58 -0.36 -1.82 15 22 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 23 H 0.03 0.69 7.14 -51.93 -0.37 0.32 15 24 H 0.03 0.56 7.51 -51.93 -0.39 0.17 15 25 H 0.13 2.03 8.06 -52.49 -0.42 1.61 15 26 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.12 1.59 7.60 -52.48 -0.40 1.19 15 28 H 0.14 1.23 8.14 -51.93 -0.42 0.81 15 29 H 0.13 2.19 7.60 -52.49 -0.40 1.79 15 LS Contribution 272.81 15.07 4.11 4.11 Total: -1.00 -29.80 272.81 -5.00 -34.81 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -2.41 Total: -1.84 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -2.96 Total: -17.10 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.77 Total: -26.00 kcal Atomic # 9 Polarization: -9.94 SS G_CDS: 0.15 Total: -9.79 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.80 -5.00 -34.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114114.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.670 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds