Wall clock time and date at job start Mon Mar 30 2020 06:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99853 * 2 1 4 4 H 1.48497 * 109.47165 * 269.99869 * 3 2 1 5 5 H 1.48507 * 109.47175 * 30.00023 * 3 2 1 6 6 H 1.48508 * 109.47100 * 149.99855 * 3 2 1 7 7 C 1.37875 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00059 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.50701 * 109.46951 * 180.02562 * 9 7 2 11 11 C 1.38253 * 119.99890 * 270.01739 * 10 9 7 12 12 C 1.38220 * 120.00051 * 180.02562 * 11 10 9 13 13 C 1.38255 * 119.99697 * 359.95697 * 12 11 10 14 14 C 1.38217 * 120.00132 * 0.07194 * 13 12 11 15 15 C 1.50706 * 119.99801 * 179.97438 * 14 13 12 16 16 F 1.39900 * 109.47329 * 29.94951 * 15 14 13 17 17 F 1.39894 * 109.47167 * 149.95137 * 15 14 13 18 18 C 1.52995 * 109.46836 * 269.95075 * 15 14 13 19 19 F 1.39907 * 109.47418 * 60.00163 * 18 15 14 20 20 F 1.39905 * 109.47222 * 180.02562 * 18 15 14 21 21 C 1.38215 * 119.99815 * 89.99902 * 10 9 7 22 22 H 0.97008 * 119.99981 * 0.02562 * 1 2 3 23 23 H 1.08990 * 109.47329 * 59.99761 * 9 7 2 24 24 H 1.09006 * 109.47198 * 299.99651 * 9 7 2 25 25 H 1.08002 * 120.00348 * 359.97438 * 11 10 9 26 26 H 1.07999 * 120.00153 * 179.97438 * 12 11 10 27 27 H 1.08005 * 119.99804 * 179.97438 * 13 12 11 28 28 H 1.09002 * 109.47404 * 300.00282 * 18 15 14 29 29 H 1.07995 * 120.00164 * 359.72517 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0010 11 6 4.2435 -3.2669 1.1983 12 6 4.7047 -4.5699 1.1982 13 6 4.9356 -5.2213 0.0008 14 6 4.7066 -4.5692 -1.1962 15 6 4.9588 -5.2792 -2.5013 16 9 4.7450 -6.6516 -2.3346 17 9 4.0854 -4.7863 -3.4767 18 6 6.4040 -5.0380 -2.9420 19 9 7.2775 -5.5309 -1.9666 20 9 6.6380 -5.6966 -4.1540 21 6 4.2446 -3.2661 -1.1961 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6800 0.8910 24 1 3.8752 -0.6804 -0.8889 25 1 4.0632 -2.7580 2.1336 26 1 4.8845 -5.0792 2.1334 27 1 5.2964 -6.2393 0.0007 28 1 6.5706 -3.9686 -3.0719 29 1 4.0608 -2.7583 -2.1313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261114114.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:45 Heat of formation + Delta-G solvation = -197.491054 kcal Electronic energy + Delta-G solvation = -19538.912109 eV Core-core repulsion = 15732.543303 eV Total energy + Delta-G solvation = -3806.368806 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.97391 -49.73745 -48.62070 -48.15420 -40.33768 -35.58555 -33.90644 -32.94928 -30.02159 -29.30636 -25.14720 -24.95219 -22.88470 -21.83049 -19.38771 -19.26959 -19.02548 -18.97330 -17.92591 -17.73424 -16.85906 -16.35524 -16.06157 -15.66982 -15.37091 -15.18181 -15.15555 -14.86717 -14.69400 -14.61795 -14.24591 -14.10241 -13.65427 -13.55288 -13.48333 -12.96312 -12.61703 -12.39368 -11.92957 -11.83920 -11.68563 -11.54254 -10.78841 -9.99992 -9.58103 -8.29680 -6.35916 0.09510 0.45075 1.38983 1.40494 1.51902 1.60877 2.35980 2.48464 2.59494 2.73087 2.93796 3.05345 3.05826 3.68288 3.71878 4.01988 4.06277 4.24130 4.47180 4.57308 4.76354 4.99312 5.09725 5.16584 5.32369 5.45179 5.55777 5.82996 5.95724 6.24947 6.71134 7.28093 8.86904 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.028168 B = 0.005492 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.794504 B = 5096.710416 C = 5366.295454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.239 1.239 7 C -0.523 4.523 8 H 0.026 0.974 9 C 0.019 3.981 10 C -0.062 4.062 11 C -0.103 4.103 12 C -0.112 4.112 13 C -0.094 4.094 14 C -0.178 4.178 15 C 0.303 3.697 16 F -0.185 7.185 17 F -0.180 7.180 18 C 0.247 3.753 19 F -0.180 7.180 20 F -0.192 7.192 21 C -0.093 4.093 22 H 0.267 0.733 23 H 0.040 0.960 24 H 0.035 0.965 25 H 0.133 0.867 26 H 0.161 0.839 27 H 0.146 0.854 28 H 0.179 0.821 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.969 -8.577 -2.465 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.162 1.162 7 C -0.561 4.561 8 H 0.044 0.956 9 C -0.018 4.018 10 C -0.062 4.062 11 C -0.121 4.121 12 C -0.130 4.130 13 C -0.112 4.112 14 C -0.179 4.179 15 C 0.265 3.735 16 F -0.166 7.166 17 F -0.161 7.161 18 C 0.193 3.807 19 F -0.161 7.161 20 F -0.173 7.173 21 C -0.111 4.111 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.151 0.849 26 H 0.178 0.822 27 H 0.164 0.836 28 H 0.195 0.805 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.825 -8.536 -2.499 18.154 hybrid contribution -0.658 0.454 -0.251 0.838 sum 15.167 -8.082 -2.750 17.405 Atomic orbital electron populations 1.70067 1.08493 1.28322 1.52158 1.26011 0.95570 1.03533 0.93882 0.85641 0.79671 0.77891 0.79368 1.19056 1.21207 1.16245 1.21163 0.90925 0.92935 1.51077 0.95592 1.18693 0.94117 0.90691 0.98285 1.20160 0.95292 0.97472 0.93287 1.21488 0.96991 0.95501 0.98076 1.21401 0.98670 0.94026 0.98868 1.21056 0.98699 1.00359 0.91046 1.19883 1.09042 0.95911 0.93015 1.20549 0.89485 0.76676 0.86780 1.93055 1.95793 1.31886 1.95832 1.93085 1.71284 1.87372 1.64363 1.22965 0.85071 0.99278 0.73406 1.93048 1.69961 1.90233 1.62829 1.93049 1.94917 1.84154 1.45222 1.20846 0.97814 0.93458 0.98989 0.92375 0.94196 0.94684 0.84908 0.82187 0.83631 0.80474 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.63 13.96 21.45 0.30 -58.33 15 2 C 0.01 0.40 5.47 84.65 0.46 0.87 15 3 Si 0.95 42.00 27.47 68.60 1.88 43.89 15 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 5 H -0.29 -12.56 7.11 99.48 0.71 -11.86 15 6 H -0.24 -9.51 6.54 99.48 0.65 -8.86 15 7 C -0.52 -29.19 9.65 25.60 0.25 -28.95 15 8 H 0.03 1.64 7.98 -2.91 -0.02 1.62 15 9 C 0.02 0.85 4.17 29.10 0.12 0.97 15 10 C -0.06 -2.35 5.07 -19.87 -0.10 -2.45 15 11 C -0.10 -3.33 9.70 22.27 0.22 -3.12 15 12 C -0.11 -2.94 10.05 22.27 0.22 -2.72 15 13 C -0.09 -2.49 9.12 22.27 0.20 -2.29 15 14 C -0.18 -5.24 4.79 -19.86 -0.10 -5.33 15 15 C 0.30 8.15 1.88 29.85 0.06 8.21 15 16 F -0.18 -5.29 16.17 44.97 0.73 -4.56 15 17 F -0.18 -5.42 16.19 44.97 0.73 -4.69 15 18 C 0.25 5.20 4.82 71.98 0.35 5.54 15 19 F -0.18 -3.96 16.79 44.97 0.76 -3.20 15 20 F -0.19 -4.45 17.30 44.97 0.78 -3.67 15 21 C -0.09 -3.18 9.06 22.27 0.20 -2.98 15 22 H 0.27 15.35 8.31 -92.70 -0.77 14.58 15 23 H 0.04 1.67 7.14 -2.39 -0.02 1.66 15 24 H 0.03 1.46 7.51 -2.38 -0.02 1.44 15 25 H 0.13 4.06 8.06 -2.91 -0.02 4.04 15 26 H 0.16 3.02 8.06 -2.91 -0.02 3.00 15 27 H 0.15 3.24 7.60 -2.91 -0.02 3.22 15 28 H 0.18 2.51 8.14 -2.39 -0.02 2.50 15 29 H 0.13 4.31 7.60 -2.91 -0.02 4.28 15 Total: -1.00 -65.93 272.81 8.18 -57.75 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.13 Total: 5.07 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 1.88 Total: -32.25 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.30 Total: -58.33 kcal Atomic # 9 Polarization: -19.12 SS G_CDS: 2.99 Total: -16.13 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.88 Total: 43.89 kcal Total: -65.93 8.18 -57.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114114.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.739 kcal (2) G-P(sol) polarization free energy of solvation -65.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds