Wall clock time and date at job start Mon Mar 30 2020 06:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47259 * 179.72713 * 9 7 2 11 11 C 1.38233 * 119.99904 * 269.72397 * 10 9 7 12 12 C 1.38231 * 119.99993 * 179.76482 * 11 10 9 13 13 C 1.38237 * 120.00323 * 0.51307 * 12 11 10 14 14 C 1.50696 * 120.00559 * 179.72317 * 13 12 11 15 15 H 1.09004 * 109.47232 * 175.02282 * 14 13 12 16 16 F 1.39898 * 109.47045 * 55.01925 * 14 13 12 17 17 C 1.53001 * 109.46773 * 295.01699 * 14 13 12 18 18 F 1.39897 * 109.46794 * 60.00461 * 17 14 13 19 19 F 1.39903 * 109.46691 * 179.97438 * 17 14 13 20 20 F 1.39898 * 109.47520 * 299.99935 * 17 14 13 21 21 C 1.38246 * 119.99369 * 359.74123 * 13 12 11 22 22 C 1.38231 * 120.00100 * 89.99885 * 10 9 7 23 23 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 25 25 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 26 26 H 1.08002 * 120.00456 * 0.02562 * 11 10 9 27 27 H 1.08006 * 120.00301 * 180.23254 * 12 11 10 28 28 H 1.07996 * 119.99765 * 179.97438 * 21 13 12 29 29 H 1.08005 * 119.99934 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0079 11 6 2.6695 -4.1706 -1.2084 12 6 3.5715 -5.2180 -1.2153 13 6 4.0261 -5.7466 -0.0216 14 6 5.0046 -6.8926 -0.0290 15 1 5.3132 -7.1135 0.9928 16 9 6.1257 -6.5437 -0.7897 17 6 4.3387 -8.1278 -0.6388 18 9 3.9426 -7.8443 -1.9503 19 9 5.2473 -9.1915 -0.6462 20 9 3.2177 -8.4767 0.1219 21 6 3.5826 -5.2240 1.1790 22 6 2.6847 -4.1731 1.1858 23 1 -0.4851 0.8401 0.0004 24 1 0.6283 -2.5592 0.8921 25 1 0.6202 -2.5546 -0.8878 26 1 2.3113 -3.7604 -2.1411 27 1 3.9177 -5.6265 -2.1533 28 1 3.9374 -5.6372 2.1116 29 1 2.3377 -3.7653 2.1237 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261115208.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:53 Heat of formation + Delta-G solvation = -190.483559 kcal Electronic energy + Delta-G solvation = -19308.749930 eV Core-core repulsion = 15502.684992 eV Total energy + Delta-G solvation = -3806.064939 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.38294 -48.27406 -47.80632 -47.54581 -38.92162 -34.05842 -32.37547 -30.54387 -29.70486 -26.74769 -24.06396 -22.57794 -22.28215 -20.38622 -18.80021 -18.71935 -18.20119 -16.56196 -16.35045 -16.16684 -15.12707 -14.62044 -14.57076 -14.44012 -14.31402 -14.27685 -14.14024 -13.89977 -13.87201 -13.65533 -12.95239 -12.72543 -12.20922 -11.82387 -11.62043 -11.35490 -11.08276 -10.84257 -10.58635 -10.39974 -9.69675 -9.55569 -8.53065 -8.49519 -8.10345 -6.12964 -4.17515 1.55049 1.83873 2.41065 3.24702 3.32703 3.37356 3.38903 3.65985 3.77372 4.13341 4.35245 4.43815 4.50427 4.88900 5.21631 5.28171 5.37093 5.79727 5.94661 6.00242 6.36981 6.40105 6.72427 6.94143 6.99482 7.35643 7.49599 7.68137 7.82580 8.19808 8.87831 9.47154 10.97039 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.042301 B = 0.004450 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.759335 B = 6290.979335 C = 6456.658233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.043 3.957 10 C -0.007 4.007 11 C -0.126 4.126 12 C -0.085 4.085 13 C -0.189 4.189 14 C 0.116 3.884 15 H 0.130 0.870 16 F -0.176 7.176 17 C 0.433 3.567 18 F -0.171 7.171 19 F -0.180 7.180 20 F -0.168 7.168 21 C -0.084 4.084 22 C -0.128 4.128 23 H 0.263 0.737 24 H 0.032 0.968 25 H 0.032 0.968 26 H 0.126 0.874 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.236 -14.920 0.712 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.006 3.994 10 C -0.007 4.007 11 C -0.144 4.144 12 C -0.103 4.103 13 C -0.189 4.189 14 C 0.079 3.921 15 H 0.148 0.852 16 F -0.157 7.157 17 C 0.379 3.621 18 F -0.152 7.152 19 F -0.161 7.161 20 F -0.149 7.149 21 C -0.102 4.102 22 C -0.146 4.146 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.144 0.856 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.100 -14.828 0.673 16.909 hybrid contribution 0.435 0.740 -0.184 0.878 sum 8.535 -14.088 0.489 16.479 Atomic orbital electron populations 1.69961 1.06057 1.26895 1.50184 1.25011 0.94905 0.99354 0.94994 0.86454 0.80132 0.83299 0.77702 1.19617 1.20861 1.20873 1.21049 0.93105 0.89645 1.51463 0.92306 1.18455 0.92598 0.89554 0.98800 1.20920 0.94222 0.93659 0.91916 1.21118 0.98159 0.96287 0.98815 1.21000 0.96383 0.96262 0.96692 1.19350 1.03379 1.00497 0.95702 1.21317 0.83992 0.90813 0.95994 0.85234 1.92947 1.52107 1.92758 1.77863 1.21078 0.77882 0.85702 0.77474 1.93202 1.91204 1.93261 1.37548 1.93210 1.66945 1.59611 1.96373 1.93223 1.53340 1.92854 1.75484 1.20811 0.97062 0.96464 0.95828 1.21093 0.98266 0.96370 0.98863 0.92765 0.94958 0.94942 0.85633 0.86053 0.86277 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 13.29 55.43 0.74 -24.97 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 15 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 7 C -0.51 -13.95 9.09 -34.44 -0.31 -14.26 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 9 C 0.04 1.05 5.10 -29.03 -0.15 0.90 15 10 C -0.01 -0.15 5.07 -104.63 -0.53 -0.68 15 11 C -0.13 -2.35 9.70 -39.59 -0.38 -2.73 15 12 C -0.09 -1.39 8.71 -39.58 -0.34 -1.74 15 13 C -0.19 -2.80 4.78 -104.62 -0.50 -3.30 15 14 C 0.12 1.40 3.58 -27.88 -0.10 1.30 15 15 H 0.13 1.13 7.89 -51.93 -0.41 0.72 15 16 F -0.18 -2.37 16.89 2.25 0.04 -2.33 15 17 C 0.43 5.31 2.90 37.16 0.11 5.41 15 18 F -0.17 -2.31 15.03 2.25 0.03 -2.27 15 19 F -0.18 -2.11 17.30 2.25 0.04 -2.08 15 20 F -0.17 -2.11 17.02 2.25 0.04 -2.08 15 21 C -0.08 -1.24 9.67 -39.58 -0.38 -1.63 15 22 C -0.13 -2.29 9.70 -39.59 -0.38 -2.67 15 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 24 H 0.03 0.83 8.09 -51.93 -0.42 0.41 15 25 H 0.03 0.84 8.08 -51.93 -0.42 0.42 15 26 H 0.13 2.27 8.06 -52.49 -0.42 1.85 15 27 H 0.12 1.80 6.80 -52.48 -0.36 1.45 15 28 H 0.12 1.35 7.95 -52.49 -0.42 0.93 15 29 H 0.13 2.16 8.06 -52.48 -0.42 1.73 15 LS Contribution 275.12 15.07 4.15 4.15 Total: -1.00 -28.68 275.12 -5.48 -34.16 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: -2.41 Total: -2.77 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -3.08 Total: -17.86 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.74 Total: -24.97 kcal Atomic # 9 Polarization: -8.90 SS G_CDS: 0.15 Total: -8.75 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.68 -5.48 -34.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115208.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.324 kcal (2) G-P(sol) polarization free energy of solvation -28.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds