Wall clock time and date at job start Mon Mar 30 2020 06:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47259 * 179.72713 * 9 7 2 11 11 C 1.38233 * 119.99904 * 269.72397 * 10 9 7 12 12 C 1.38231 * 119.99993 * 179.76482 * 11 10 9 13 13 C 1.38237 * 120.00323 * 0.51307 * 12 11 10 14 14 C 1.50696 * 120.00559 * 179.72317 * 13 12 11 15 15 H 1.09004 * 109.47232 * 175.02282 * 14 13 12 16 16 F 1.39898 * 109.47045 * 55.01925 * 14 13 12 17 17 C 1.53001 * 109.46773 * 295.01699 * 14 13 12 18 18 F 1.39897 * 109.46794 * 60.00461 * 17 14 13 19 19 F 1.39903 * 109.46691 * 179.97438 * 17 14 13 20 20 F 1.39898 * 109.47520 * 299.99935 * 17 14 13 21 21 C 1.38246 * 119.99369 * 359.74123 * 13 12 11 22 22 C 1.38231 * 120.00100 * 89.99885 * 10 9 7 23 23 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 25 25 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 26 26 H 1.08002 * 120.00456 * 0.02562 * 11 10 9 27 27 H 1.08006 * 120.00301 * 180.23254 * 12 11 10 28 28 H 1.07996 * 119.99765 * 179.97438 * 21 13 12 29 29 H 1.08005 * 119.99934 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0079 11 6 2.6695 -4.1706 -1.2084 12 6 3.5715 -5.2180 -1.2153 13 6 4.0261 -5.7466 -0.0216 14 6 5.0046 -6.8926 -0.0290 15 1 5.3132 -7.1135 0.9928 16 9 6.1257 -6.5437 -0.7897 17 6 4.3387 -8.1278 -0.6388 18 9 3.9426 -7.8443 -1.9503 19 9 5.2473 -9.1915 -0.6462 20 9 3.2177 -8.4767 0.1219 21 6 3.5826 -5.2240 1.1790 22 6 2.6847 -4.1731 1.1858 23 1 -0.4851 0.8401 0.0004 24 1 0.6283 -2.5592 0.8921 25 1 0.6202 -2.5546 -0.8878 26 1 2.3113 -3.7604 -2.1411 27 1 3.9177 -5.6265 -2.1533 28 1 3.9374 -5.6372 2.1116 29 1 2.3377 -3.7653 2.1237 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261115208.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:53 Heat of formation + Delta-G solvation = -204.775653 kcal Electronic energy + Delta-G solvation = -19309.369682 eV Core-core repulsion = 15502.684992 eV Total energy + Delta-G solvation = -3806.684690 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.34575 -49.26127 -48.76635 -48.52564 -40.28119 -35.78294 -34.05988 -31.87521 -31.17485 -28.33686 -25.60141 -23.98958 -23.59954 -21.79560 -19.76979 -19.69838 -19.20770 -18.54548 -17.65509 -17.22009 -16.75911 -16.01912 -15.70981 -15.57425 -15.45362 -15.37111 -15.13099 -14.93515 -14.88590 -14.85640 -14.56701 -14.23692 -13.77719 -13.35580 -13.29619 -12.76266 -12.64824 -12.43616 -12.27433 -11.84853 -11.55806 -11.43994 -10.63117 -9.83969 -9.60154 -8.23206 -6.36134 0.22742 0.49886 1.39095 1.39892 1.42773 1.53236 2.37423 2.44097 2.66232 2.71710 2.95378 3.08771 3.32876 3.61499 3.83728 4.08867 4.16372 4.29288 4.60180 4.63417 4.97817 5.02721 5.31670 5.32308 5.40569 5.48947 5.71839 5.99028 6.00752 6.16410 6.76800 7.32930 8.86791 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.042301 B = 0.004450 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.759335 B = 6290.979335 C = 6456.658233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.051 3.949 10 C -0.040 4.040 11 C -0.140 4.140 12 C -0.087 4.087 13 C -0.180 4.180 14 C 0.120 3.880 15 H 0.176 0.824 16 F -0.182 7.182 17 C 0.435 3.565 18 F -0.182 7.182 19 F -0.175 7.175 20 F -0.169 7.169 21 C -0.068 4.068 22 C -0.138 4.138 23 H 0.266 0.734 24 H 0.010 0.990 25 H 0.004 0.996 26 H 0.117 0.883 27 H 0.135 0.865 28 H 0.167 0.833 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.438 -15.981 1.646 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.040 4.040 11 C -0.158 4.158 12 C -0.105 4.105 13 C -0.181 4.181 14 C 0.083 3.917 15 H 0.193 0.807 16 F -0.163 7.163 17 C 0.381 3.619 18 F -0.163 7.163 19 F -0.156 7.156 20 F -0.151 7.151 21 C -0.086 4.086 22 C -0.156 4.156 23 H 0.075 0.925 24 H 0.028 0.972 25 H 0.023 0.977 26 H 0.135 0.865 27 H 0.153 0.847 28 H 0.184 0.816 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.308 -15.903 1.604 19.019 hybrid contribution -0.233 0.953 -0.485 1.095 sum 10.075 -14.950 1.119 18.062 Atomic orbital electron populations 1.70079 1.07644 1.27962 1.51189 1.25909 0.95755 1.03096 0.94535 0.85388 0.78931 0.78750 0.77945 1.18923 1.20329 1.20069 1.21374 0.93116 0.91084 1.51091 0.92630 1.18183 0.92992 0.91106 0.96294 1.20606 0.95427 0.93970 0.94024 1.21079 0.99329 0.97508 0.97904 1.21162 0.95593 0.95399 0.98310 1.19707 1.02756 1.00571 0.95027 1.21509 0.82905 0.89080 0.98184 0.80679 1.92942 1.52251 1.92752 1.78316 1.21097 0.77826 0.86006 0.77013 1.93188 1.91340 1.93343 1.38435 1.93225 1.66709 1.59361 1.96311 1.93227 1.53510 1.92905 1.75423 1.21203 0.94997 0.94575 0.97817 1.21189 0.99122 0.97468 0.97788 0.92513 0.97167 0.97724 0.86513 0.84705 0.81553 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.09 13.29 21.45 0.28 -54.81 15 2 C 0.01 0.31 5.46 84.65 0.46 0.77 15 3 Si 0.97 43.60 29.54 68.60 2.03 45.63 15 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 15 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 7 C -0.53 -29.55 9.09 25.60 0.23 -29.32 15 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 15 9 C 0.05 2.66 5.10 29.10 0.15 2.81 15 10 C -0.04 -1.69 5.07 -19.87 -0.10 -1.79 15 11 C -0.14 -5.33 9.70 22.27 0.22 -5.11 15 12 C -0.09 -2.71 8.71 22.27 0.19 -2.52 15 13 C -0.18 -4.77 4.78 -19.86 -0.09 -4.87 15 14 C 0.12 2.37 3.58 29.85 0.11 2.48 15 15 H 0.18 1.95 7.89 -2.39 -0.02 1.93 15 16 F -0.18 -4.22 16.89 44.97 0.76 -3.46 15 17 C 0.44 9.24 2.90 71.98 0.21 9.45 15 18 F -0.18 -4.51 15.03 44.97 0.68 -3.83 15 19 F -0.17 -3.53 17.30 44.97 0.78 -2.75 15 20 F -0.17 -3.73 17.02 44.97 0.77 -2.97 15 21 C -0.07 -1.79 9.67 22.27 0.22 -1.58 15 22 C -0.14 -4.81 9.70 22.27 0.22 -4.59 15 23 H 0.27 14.76 8.31 -92.71 -0.77 13.99 15 24 H 0.01 0.55 8.09 -2.39 -0.02 0.53 15 25 H 0.00 0.25 8.08 -2.39 -0.02 0.23 15 26 H 0.12 4.47 8.06 -2.91 -0.02 4.45 15 27 H 0.14 3.80 6.80 -2.91 -0.02 3.78 15 28 H 0.17 2.80 7.95 -2.91 -0.02 2.78 15 29 H 0.13 4.32 8.06 -2.91 -0.02 4.30 15 Total: -1.00 -63.44 275.12 8.28 -55.16 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: 1.18 Total: 1.30 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 1.80 Total: -34.27 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.28 Total: -54.81 kcal Atomic # 9 Polarization: -15.99 SS G_CDS: 2.98 Total: -13.01 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -63.44 8.28 -55.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115208.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.612 kcal (2) G-P(sol) polarization free energy of solvation -63.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds