Wall clock time and date at job start Mon Mar 30 2020 06:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00196 * 2 1 4 4 H 1.48496 * 109.47427 * 270.00274 * 3 2 1 5 5 H 1.48503 * 109.46970 * 30.00503 * 3 2 1 6 6 H 1.48501 * 109.47114 * 150.00171 * 3 2 1 7 7 C 1.37882 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99648 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00009 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46833 * 179.97438 * 9 7 2 11 11 C 1.38234 * 120.00257 * 89.99861 * 10 9 7 12 12 C 1.38238 * 119.99675 * 180.25732 * 11 10 9 13 13 C 1.38228 * 120.00110 * 359.52133 * 12 11 10 14 14 C 1.50706 * 119.99983 * 180.21781 * 13 12 11 15 15 H 1.09002 * 109.46816 * 185.21592 * 14 13 12 16 16 F 1.39898 * 109.47050 * 305.21458 * 14 13 12 17 17 C 1.52997 * 109.47019 * 65.21250 * 14 13 12 18 18 F 1.39904 * 109.46750 * 60.00014 * 17 14 13 19 19 F 1.39903 * 109.46879 * 179.97438 * 17 14 13 20 20 F 1.39901 * 109.47090 * 300.00029 * 17 14 13 21 21 C 1.38234 * 120.00090 * 0.43562 * 13 12 11 22 22 C 1.38235 * 119.99522 * 269.96874 * 10 9 7 23 23 H 0.97003 * 119.99809 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47727 * 59.99250 * 9 7 2 25 25 H 1.08998 * 109.46529 * 299.99081 * 9 7 2 26 26 H 1.08002 * 119.99744 * 359.97115 * 11 10 9 27 27 H 1.08004 * 119.99577 * 179.72816 * 12 11 10 28 28 H 1.08001 * 120.00324 * 179.78918 * 21 13 12 29 29 H 1.07996 * 120.00471 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0137 -2.6150 -0.0001 11 6 4.2446 -3.2664 -1.1972 12 6 4.7002 -4.5716 -1.1972 13 6 4.9344 -5.2219 -0.0002 14 6 5.4358 -6.6431 -0.0002 15 1 5.4723 -7.0155 1.0236 16 9 4.5720 -7.4423 -0.7567 17 6 6.8383 -6.6890 -0.6099 18 9 7.7021 -5.8897 0.1466 19 9 7.3040 -8.0083 -0.6094 20 9 6.7914 -6.2110 -1.9239 21 6 4.7045 -4.5701 1.1970 22 6 4.2442 -3.2666 1.1971 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6808 0.8904 25 1 3.8751 -0.6798 -0.8895 26 1 4.0645 -2.7573 -2.1325 27 1 4.8763 -5.0820 -2.1326 28 1 4.8842 -5.0793 2.1323 29 1 4.0640 -2.7577 2.1324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261115212.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:55 Heat of formation + Delta-G solvation = -186.106452 kcal Electronic energy + Delta-G solvation = -19336.256743 eV Core-core repulsion = 15530.381611 eV Total energy + Delta-G solvation = -3805.875133 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.41323 -48.29941 -47.83655 -47.57428 -39.00864 -34.12069 -32.37471 -30.61407 -30.04907 -27.11092 -24.01582 -22.51017 -22.20664 -20.32771 -18.83383 -18.75253 -18.23439 -16.86680 -16.54904 -16.21285 -15.14879 -14.64838 -14.54634 -14.50596 -14.35804 -14.23369 -14.15624 -13.93535 -13.91471 -13.74621 -13.02928 -12.70663 -12.51303 -11.92056 -11.84012 -11.58970 -11.17919 -10.80673 -10.45848 -10.20552 -10.07133 -9.48848 -8.66842 -8.57306 -8.16621 -6.15416 -4.15993 1.48082 1.77386 2.37358 3.23109 3.31438 3.32942 3.35525 3.62484 3.73638 4.08348 4.34041 4.35090 4.47218 4.85147 5.15048 5.23481 5.31718 5.65797 5.87991 5.91094 6.26390 6.31134 6.65947 6.77034 6.81886 6.88591 7.33916 7.39497 7.59073 8.39111 8.88821 9.43815 10.97263 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.043174 B = 0.004553 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.384912 B = 6147.711999 C = 6293.779964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.517 4.517 8 H 0.075 0.925 9 C 0.010 3.990 10 C -0.003 4.003 11 C -0.123 4.123 12 C -0.084 4.084 13 C -0.185 4.185 14 C 0.116 3.884 15 H 0.131 0.869 16 F -0.175 7.175 17 C 0.434 3.566 18 F -0.168 7.168 19 F -0.179 7.179 20 F -0.171 7.171 21 C -0.083 4.083 22 C -0.125 4.125 23 H 0.265 0.735 24 H 0.031 0.969 25 H 0.027 0.973 26 H 0.127 0.873 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.684 -12.178 0.789 18.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.555 4.555 8 H 0.093 0.907 9 C -0.027 4.027 10 C -0.003 4.003 11 C -0.141 4.141 12 C -0.102 4.102 13 C -0.185 4.185 14 C 0.078 3.922 15 H 0.148 0.852 16 F -0.156 7.156 17 C 0.379 3.621 18 F -0.149 7.149 19 F -0.161 7.161 20 F -0.152 7.152 21 C -0.101 4.101 22 C -0.143 4.143 23 H 0.075 0.925 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.145 0.855 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.530 -12.085 0.754 18.157 hybrid contribution 0.420 0.759 -0.201 0.891 sum 13.950 -11.326 0.553 17.978 Atomic orbital electron populations 1.69892 1.06281 1.27129 1.50184 1.24994 0.94752 0.99062 0.94323 0.86798 0.80369 0.83588 0.78725 1.20082 1.21155 1.18902 1.20872 0.87939 0.94801 1.51906 0.90732 1.18897 0.97699 0.88347 0.97774 1.20509 0.89640 0.97959 0.92196 1.21095 1.00146 0.94160 0.98724 1.20996 0.97450 0.95043 0.96755 1.19377 1.10367 0.93108 0.95682 1.21325 0.83369 0.91294 0.96187 0.85151 1.92954 1.70077 1.74477 1.78052 1.21072 0.89727 0.73861 0.77462 1.93222 1.72142 1.73866 1.75719 1.93213 1.90402 1.36096 1.96360 1.93204 1.96624 1.88062 1.37319 1.20808 0.98181 0.95105 0.95973 1.21066 1.00363 0.94189 0.98696 0.92461 0.95047 0.95480 0.85523 0.85896 0.86102 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.96 55.43 0.77 -26.12 15 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 3 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.26 -5.94 6.54 56.52 0.37 -5.57 15 7 C -0.52 -14.20 9.65 -34.44 -0.33 -14.53 15 8 H 0.07 2.25 7.98 -52.49 -0.42 1.83 15 9 C 0.01 0.23 4.17 -29.03 -0.12 0.10 15 10 C 0.00 -0.06 5.07 -104.62 -0.53 -0.59 15 11 C -0.12 -2.23 9.70 -39.58 -0.38 -2.61 15 12 C -0.08 -1.35 8.70 -39.59 -0.34 -1.69 15 13 C -0.18 -2.68 4.78 -104.62 -0.50 -3.18 15 14 C 0.12 1.36 3.58 -27.88 -0.10 1.26 15 15 H 0.13 1.10 7.89 -51.93 -0.41 0.69 15 16 F -0.18 -2.33 16.89 2.25 0.04 -2.30 15 17 C 0.43 5.16 2.90 37.16 0.11 5.27 15 18 F -0.17 -2.04 17.02 2.25 0.04 -2.01 15 19 F -0.18 -2.06 17.30 2.25 0.04 -2.02 15 20 F -0.17 -2.24 15.05 2.25 0.03 -2.21 15 21 C -0.08 -1.20 9.67 -39.58 -0.38 -1.58 15 22 C -0.13 -2.17 9.70 -39.58 -0.38 -2.55 15 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 24 H 0.03 0.70 7.14 -51.93 -0.37 0.33 15 25 H 0.03 0.60 7.51 -51.93 -0.39 0.21 15 26 H 0.13 2.19 8.06 -52.49 -0.42 1.77 15 27 H 0.12 1.78 6.81 -52.48 -0.36 1.42 15 28 H 0.12 1.32 7.95 -52.49 -0.42 0.91 15 29 H 0.13 2.08 8.06 -52.49 -0.42 1.66 15 LS Contribution 271.55 15.07 4.09 4.09 Total: -1.00 -29.57 271.55 -5.10 -34.67 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -2.38 Total: -1.97 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -3.07 Total: -18.21 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.77 Total: -26.12 kcal Atomic # 9 Polarization: -8.68 SS G_CDS: 0.15 Total: -8.53 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.57 -5.10 -34.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115212.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.436 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds