Wall clock time and date at job start Mon Mar 30 2020 06:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00196 * 2 1 4 4 H 1.48496 * 109.47427 * 270.00274 * 3 2 1 5 5 H 1.48503 * 109.46970 * 30.00503 * 3 2 1 6 6 H 1.48501 * 109.47114 * 150.00171 * 3 2 1 7 7 C 1.37882 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99648 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00009 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46833 * 179.97438 * 9 7 2 11 11 C 1.38234 * 120.00257 * 89.99861 * 10 9 7 12 12 C 1.38238 * 119.99675 * 180.25732 * 11 10 9 13 13 C 1.38228 * 120.00110 * 359.52133 * 12 11 10 14 14 C 1.50706 * 119.99983 * 180.21781 * 13 12 11 15 15 H 1.09002 * 109.46816 * 185.21592 * 14 13 12 16 16 F 1.39898 * 109.47050 * 305.21458 * 14 13 12 17 17 C 1.52997 * 109.47019 * 65.21250 * 14 13 12 18 18 F 1.39904 * 109.46750 * 60.00014 * 17 14 13 19 19 F 1.39903 * 109.46879 * 179.97438 * 17 14 13 20 20 F 1.39901 * 109.47090 * 300.00029 * 17 14 13 21 21 C 1.38234 * 120.00090 * 0.43562 * 13 12 11 22 22 C 1.38235 * 119.99522 * 269.96874 * 10 9 7 23 23 H 0.97003 * 119.99809 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47727 * 59.99250 * 9 7 2 25 25 H 1.08998 * 109.46529 * 299.99081 * 9 7 2 26 26 H 1.08002 * 119.99744 * 359.97115 * 11 10 9 27 27 H 1.08004 * 119.99577 * 179.72816 * 12 11 10 28 28 H 1.08001 * 120.00324 * 179.78918 * 21 13 12 29 29 H 1.07996 * 120.00471 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0137 -2.6150 -0.0001 11 6 4.2446 -3.2664 -1.1972 12 6 4.7002 -4.5716 -1.1972 13 6 4.9344 -5.2219 -0.0002 14 6 5.4358 -6.6431 -0.0002 15 1 5.4723 -7.0155 1.0236 16 9 4.5720 -7.4423 -0.7567 17 6 6.8383 -6.6890 -0.6099 18 9 7.7021 -5.8897 0.1466 19 9 7.3040 -8.0083 -0.6094 20 9 6.7914 -6.2110 -1.9239 21 6 4.7045 -4.5701 1.1970 22 6 4.2442 -3.2666 1.1971 23 1 -0.4850 0.8401 -0.0004 24 1 3.8746 -0.6808 0.8904 25 1 3.8751 -0.6798 -0.8895 26 1 4.0645 -2.7573 -2.1325 27 1 4.8763 -5.0820 -2.1326 28 1 4.8842 -5.0793 2.1323 29 1 4.0640 -2.7577 2.1324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261115212.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:55 Heat of formation + Delta-G solvation = -201.995373 kcal Electronic energy + Delta-G solvation = -19336.945739 eV Core-core repulsion = 15530.381611 eV Total energy + Delta-G solvation = -3806.564128 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.35204 -49.27267 -48.77454 -48.53171 -40.30535 -35.76002 -34.13880 -31.88981 -31.51477 -28.59125 -25.40121 -23.86913 -23.55331 -21.73080 -19.77855 -19.70584 -19.21623 -18.99023 -17.68551 -17.24363 -16.65260 -16.00905 -15.75137 -15.58378 -15.48420 -15.38284 -15.14616 -15.04877 -14.89317 -14.86176 -14.54872 -14.26675 -14.00027 -13.54140 -13.39256 -12.75503 -12.58495 -12.33324 -11.99051 -11.83619 -11.72482 -11.53383 -10.80350 -9.84765 -9.58725 -8.31316 -6.37213 0.20738 0.48848 1.37345 1.38514 1.41329 1.50240 2.34431 2.42587 2.65192 2.68632 2.93103 3.03314 3.32338 3.60459 3.82389 4.07761 4.14408 4.21621 4.57960 4.61296 4.91863 4.96225 5.07314 5.23486 5.39687 5.45151 5.53922 5.90488 6.01764 6.23966 6.69387 7.26591 8.85115 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.043174 B = 0.004553 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.384912 B = 6147.711999 C = 6293.779964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.243 1.243 7 C -0.522 4.522 8 H 0.028 0.972 9 C 0.015 3.985 10 C -0.039 4.039 11 C -0.139 4.139 12 C -0.089 4.089 13 C -0.179 4.179 14 C 0.118 3.882 15 H 0.175 0.825 16 F -0.183 7.183 17 C 0.437 3.563 18 F -0.168 7.168 19 F -0.175 7.175 20 F -0.181 7.181 21 C -0.071 4.071 22 C -0.137 4.137 23 H 0.268 0.732 24 H 0.038 0.962 25 H 0.031 0.969 26 H 0.122 0.878 27 H 0.135 0.865 28 H 0.166 0.834 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.799 -12.937 1.713 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.560 4.560 8 H 0.047 0.953 9 C -0.022 4.022 10 C -0.039 4.039 11 C -0.157 4.157 12 C -0.107 4.107 13 C -0.179 4.179 14 C 0.081 3.919 15 H 0.192 0.808 16 F -0.164 7.164 17 C 0.382 3.618 18 F -0.150 7.150 19 F -0.156 7.156 20 F -0.162 7.162 21 C -0.089 4.089 22 C -0.155 4.155 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.140 0.860 27 H 0.152 0.848 28 H 0.184 0.816 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.667 -12.864 1.676 20.340 hybrid contribution -0.243 0.832 -0.499 1.000 sum 15.424 -12.032 1.177 19.597 Atomic orbital electron populations 1.70055 1.08365 1.28339 1.52102 1.25985 0.95589 1.03424 0.93896 0.85649 0.79612 0.78070 0.79303 1.19199 1.20904 1.16583 1.21123 0.90681 0.93053 1.51094 0.95325 1.18736 0.94372 0.91054 0.98007 1.20385 0.92528 0.97028 0.93990 1.21137 1.01094 0.95334 0.98155 1.21173 0.97080 0.94255 0.98235 1.19723 1.08578 0.94508 0.95113 1.21534 0.82613 0.89449 0.98292 0.80765 1.92944 1.70404 1.74476 1.78546 1.21053 0.89813 0.73931 0.77017 1.93227 1.72200 1.73909 1.75626 1.93226 1.90343 1.35753 1.96304 1.93190 1.96665 1.88220 1.38168 1.21214 0.95994 0.93845 0.97833 1.21243 1.00667 0.95615 0.97950 0.92312 0.94398 0.95078 0.86007 0.84760 0.81639 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.76 13.96 21.45 0.30 -58.46 15 2 C 0.01 0.48 5.47 84.66 0.46 0.94 15 3 Si 0.95 42.86 27.47 68.60 1.88 44.75 15 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 15 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 15 6 H -0.24 -9.99 6.54 99.48 0.65 -9.34 15 7 C -0.52 -29.57 9.65 25.60 0.25 -29.32 15 8 H 0.03 1.82 7.98 -2.91 -0.02 1.80 15 9 C 0.02 0.71 4.17 29.10 0.12 0.83 15 10 C -0.04 -1.55 5.07 -19.87 -0.10 -1.66 15 11 C -0.14 -5.06 9.70 22.27 0.22 -4.84 15 12 C -0.09 -2.74 8.70 22.27 0.19 -2.55 15 13 C -0.18 -4.68 4.78 -19.87 -0.09 -4.77 15 14 C 0.12 2.34 3.58 29.85 0.11 2.44 15 15 H 0.18 1.97 7.89 -2.39 -0.02 1.95 15 16 F -0.18 -4.34 16.89 44.97 0.76 -3.58 15 17 C 0.44 9.07 2.90 71.98 0.21 9.28 15 18 F -0.17 -3.56 17.02 44.97 0.77 -2.79 15 19 F -0.17 -3.50 17.30 44.97 0.78 -2.72 15 20 F -0.18 -4.38 15.05 44.97 0.68 -3.71 15 21 C -0.07 -1.83 9.67 22.27 0.22 -1.61 15 22 C -0.14 -4.56 9.70 22.27 0.22 -4.34 15 23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 15 24 H 0.04 1.66 7.14 -2.39 -0.02 1.64 15 25 H 0.03 1.37 7.51 -2.39 -0.02 1.36 15 26 H 0.12 4.36 8.06 -2.91 -0.02 4.33 15 27 H 0.13 3.73 6.81 -2.91 -0.02 3.71 15 28 H 0.17 2.74 7.95 -2.91 -0.02 2.72 15 29 H 0.13 4.16 8.06 -2.91 -0.02 4.14 15 Total: -1.00 -66.00 271.55 8.08 -57.92 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.13 Total: 4.21 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 1.79 Total: -35.61 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.30 Total: -58.46 kcal Atomic # 9 Polarization: -15.78 SS G_CDS: 2.98 Total: -12.80 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.75 kcal Total: -66.00 8.08 -57.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115212.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.074 kcal (2) G-P(sol) polarization free energy of solvation -66.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds